BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54560.1
Length=689
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485860 jgi|Araly1|485860|fgenesh2_kg.5__1852__AT3G54560.1 867 0.0
Ahg947103 jgi|Araly1|947103|scaffold_703332.1 219 3e-56
> Ahg485860 jgi|Araly1|485860|fgenesh2_kg.5__1852__AT3G54560.1
Length=671
Score = 867 bits (469), Expect = 0.0
Identities = 622/692 (90%), Gaps = 25/692 (4%)
Strand=Plus/Plus
Query 1 AACCAGATTTCGTTTCTTTCGTCC-tttttttCCTTTTGCATTCTCTCGTCGTCGTCTCA 59
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1 AACCAGATTTCGTTTCTTTCGTCCTTTTTTTTTTTTTTGCATTCTCTCGTCGTCGTCTCA 60
Query 60 AGATCTAGAAGAAGGAAACAACAATTTCAAGAGACATGGCAGGCAAAGGTGGAAAAGGAC 119
|||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||
Sbjct 61 AGATCTAGAAGAAGGAAACAGCAATTTGAAGCGACATGGCAGGCAAAGGTGGAAAAGGAC 120
Query 120 TCGTAGCTGCGAAGACGATGGCTGCTAACAAGGACAAAGACAAGGACAAGAAGAAACCCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGTAGCTGCGAAGACGATGGCTGCTAACAAGGACAAAGACAAGGACAAGAAGAAACCCA 180
Query 180 TCTCTCGCTCTGCTCGTGCTGGTATTCAGTTTCCAGTTGGACGAATTCACAGGCAACTGA 239
|||||||||||||||||||||||||||||||||| || || || |||||||||||||| |
Sbjct 181 TCTCTCGCTCTGCTCGTGCTGGTATTCAGTTTCCTGTGGGTCGTATTCACAGGCAACTCA 240
Query 240 AGACCCGAGTCTCGGCACATGGCAGAGTTGGTGCCACTGCAGCCGTCTACACAGCTTCAA 299
||||| |||| || ||||| |||||||||||||| ||||| || || ||||| || ||||
Sbjct 241 AGACCAGAGTTTCCGCACACGGCAGAGTTGGTGCAACTGCTGCTGTTTACACGGCATCAA 300
Query 300 TCCTGGAGTATCTGACAGCAGAGGTTCTTGAGTTGGCTGGGAATGCGAGCAAGGATCTCA 359
||||||||||||| || || || ||||||||||||||||| || || ||||||||| | |
Sbjct 301 TCCTGGAGTATCTAACTGCTGAAGTTCTTGAGTTGGCTGGAAACGCTAGCAAGGATTTGA 360
Query 360 AAGTGAAGAGGATAACGCCAAGGCATCTGCAGTTGGCGATTAGAGGAGATGAGGAGCTGG 419
||||||||||||| || || ||||||||||||||||| || ||||||||||||||||| |
Sbjct 361 AAGTGAAGAGGATCACTCCGAGGCATCTGCAGTTGGCTATCAGAGGAGATGAGGAGCTTG 420
Query 420 ACACACTCATCAAGGGAACGATTGCTGGAGGTGGTGTGATCCCTCACATCCACAAGTCTC 479
||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 421 ACACACTCATCAAGGGAACGATTGCCGGAGGAGGTGTGATCCCACACATCCACAAGTCTC 480
Query 480 TCATCAACAAAACCACCAAGGAGTGATGTGTAGCTTTTTATGGTGTTTGTATTTCTGTAG 539
| ||||||||||||||||||||||||| ||| | ||| | | | | ||
Sbjct 481 TGATCAACAAAACCACCAAGGAGTGAT-TGT-G-TTTCT-T--T------A-----GT-- 521
Query 540 TCTTGGACTCATTTTCCTTTATCC-TTTTCTTAGTTCTTTGACTAGTGTTGACCTCTTCT 598
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 522 -CTTGGACTCATTTTCCTTT-TCCCTTTTCTTAGTTCTTTGACTAGTGTTGACCTCTTCT 579
Query 599 GGACATCCTCAGGTGTACATTAGTTAATTTGAACTCTTTAGGTTCCTT--GTTCAATCAT 656
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||
Sbjct 580 GGACATCCTCAGGTGTACATTAGTTAATTTGAACTCTTTAGGTTTCTTTTGTTCAAGCAA 639
Query 657 ATGTTCTCTTTCTATGCTATTGTGATTTGCTT 688
||||||||||| |||||||||||||||||||
Sbjct 640 ATGTTCTCTTTGAATGCTATTGTGATTTGCTT 671
> Ahg947103 jgi|Araly1|947103|scaffold_703332.1
Length=568
Score = 219 bits (118), Expect = 3e-56
Identities = 164/186 (88%), Gaps = 4/186 (2%)
Strand=Plus/Plus
Query 317 GCAGAGGTTCTTGAGTTGGCTGGGAATGCGAGCAAGGATCTCAAAGTGAAGAGGATAACG 376
||||| ||||||||||| ||||| |||| |||||| ||||| |||||||||||||| ||
Sbjct 99 GCAGAAGTTCTTGAGTTAGCTGGAAATGTGAGCAAAGATCTGAAAGTGAAGAGGATTACT 158
Query 377 CCAAGGCATCTGCAGTTGGCGATTAGAGGAGATGAGGAGCTGGACACACTCATCAAGGGA 436
||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct 159 CCAAGGCATTTGCAGTTGGCGATTAGAGGAGATGAGGAGCTTGTGACACTCATCAAAGGA 218
Query 437 ACGATTGCTGGAGGTGGTGTGA-TCCCTCACATCCACAAGTCTCTCATCAACAAAACCAC 495
|| ||||||||||| ||||| | | ||||||||||||| ||||| ||||||||| ||||
Sbjct 219 ACAATTGCTGGAGGAGGTGT-ACTGCCTCACATCCACATGTCTC--ATCAACAAACCCAC 275
Query 496 CAAGGA 501
||||||
Sbjct 276 CAAGGA 281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25313616888
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5