BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54570.1
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485861 jgi|Araly1|485861|fgenesh2_kg.5__1853__AT3G54570.1 905 0.0
> Ahg485861 jgi|Araly1|485861|fgenesh2_kg.5__1853__AT3G54570.1
Length=1245
Score = 905 bits (490), Expect = 0.0
Identities = 601/652 (92%), Gaps = 17/652 (3%)
Strand=Plus/Plus
Query 1 ATGGTTCAGAGTAAAACTGCTCAAGCTTTGGTAGGGCAAGGACATGGTAGGAGGCTTAGA 60
||||||||| |||| ||||||||||||||| |||||||||||||||| ||||| ||| ||
Sbjct 1 ATGGTTCAGTGTAAGACTGCTCAAGCTTTGTTAGGGCAAGGACATGGGAGGAGCCTTGGA 60
Query 61 CCGGAGATGATAAAGAAGAGACCAAGGGCTAGTAGGCTTCCTCAACCAACGACACCGGAG 120
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 CCGGAGATGATGAAGAAGAGACCAAGACCTAGTAGGCTTCCTCAACCAACGACACCGGAG 120
Query 121 AAGCAGATCGTTGCTAAAGTCACAGGCGGGTCACCTAATTATATGAAGGGAACGAGGAGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGCAGATCGTTGCTAAAGTCACAGGCGGGTCACCTAATTATATGAAGGGAACGAGGAGT 180
Query 181 TCAGAGGCTAGAAGACAGAGCCAAAGTGTTCAAGCTGGTTTAGACAAGAAGAGCCAAACC 240
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 TCAGAGGCTAGGAGACAGAGCCAAAGTGTTCAAGCTGGTTTAGACAAGAAGAGCCAGACC 240
Query 241 GGTAAGAAACTTGATTCTTGCTCTAGAGAAAAGAAACAGAGTAGTAGTAG--G-TCTTTG 297
||||||||||| ||||||||| |||||| |||||||||||||||||||| | ||||||
Sbjct 241 GGTAAGAAACTCGATTCTTGCAATAGAGATAAGAAACAGAGTAGTAGTAGTAGGTCTTTG 300
Query 298 AAAAAGGGTCAGAGCTTCAAGAGAAGTGGTAGGATTGGTCGTTGTTGGGATGCGAATGTG 357
|||||||||| ||| ||||||||||||||||||| | ||| | ||||||||| ||||| |
Sbjct 301 AAAAAGGGTCTGAGTTTCAAGAGAAGTGGTAGGAGTAGTCATCGTTGGGATGTGAATGCG 360
Query 358 CATAGAGCAACTTGCTCTTCGCTTCTCAAAAACTCAAAATTCACAGAGGATCTGATGTTT 417
|||||||||||||| |||||| |||| ||||||||||| |||||||||||| ||||| ||
Sbjct 361 CATAGAGCAACTTGTTCTTCGTTTCTTAAAAACTCAAAGTTCACAGAGGATATGATGCTT 420
Query 418 ACTTCTCCT-CATATCTTGAAAGTCTGTCCTTATACGTATTGTTCACTCAACGCGCATCT 476
||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACTTCTCCTGC-TGTCTTGAAAGTCTGTCCTTATACGTATTGTTCACTCAACGCGCATCT 479
Query 477 TCACAGCCAATTCCCACCTCTTCTAAGCTTTATATCCGAAAGGAGACGCTCCTTGAAGTC 536
|||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 480 TCACCGCCAATTCCCACCTCTTCAAAGCTTTATATCCGCAAGGAGACGCTCCTTGAAGTC 539
Query 537 CCATGCA---A----G-TG-GTG---AATGTGATGATGGTTGTGTGGAAATCTATGTTGA 584
||||||| | | || ||| |||||| |||||||||||||||||||||||||||
Sbjct 540 CCATGCAGGTATAAAGATGAGTGGTGAATGTGCTGATGGTTGTGTGGAAATCTATGTTGA 599
Query 585 TGAGAAGAAAGAAAATAGAAGCACTCGAGAAACTGATATCAAAGTAATCGAT 636
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGAGAAGAAAGAAAATAGAAGCACTCGAGAAACTGATATCAAAGTAATCGAT 651
Score = 726 bits (393), Expect = 0.0
Identities = 478/518 (92%), Gaps = 10/518 (2%)
Strand=Plus/Plus
Query 742 AACTTTGCAG-TTCTTGAACAATCAGAAAATTCAAGTGAGGATCAAGAGCGTGAAGAGGG 800
|||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 733 AACTTTGC-GATTCTTGAACAATCAGAAAATTCAAGTGAGGATCAAGAACGTGAAGAGGA 791
Query 801 TGGTTTCTCGAATAACACAACCAACTCTCTTTTATTTGAACAGTCGATTATACAAGATGA 860
|||||||||| ||||||||| |||| || |||||| |||||| | |||||||||||||||
Sbjct 792 TGGTTTCTCGGATAACACAATCAACACTTTTTTATCTGAACAATTGATTATACAAGATGA 851
Query 861 CATCATTCTAGGGAATGCTGTGGATGAGAAGCAT-GAATCTAAGGAAGCTGAAGACTGGA 919
||||| ||||||||||||| | |||||||||| | || || |||||| ||||||| ||||
Sbjct 852 CATCAATCTAGGGAATGCTCTTGATGAGAAGC-TGGACTCCAAGGAAACTGAAGATTGGA 910
Query 920 AGG-AGGCAGATGGAGAGAAAGTGAAAGAGCGGATTAAACTTGTATTGAAAACAGAGGAA 978
||| | |||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 911 AGGCA-GCAGATGGAGAGAAAGTGAAAGAGCGGATTAAACTTGTATCGGAAACAGAGGAA 969
Query 979 GCTCTGTTATCACTTGCACAAAAACCTTGCAACCGAGAAGAGTGCATTGAGGATT-GTAG 1037
|||||||||| ||||| |||||||| ||||||||||||||||||| |||||||| | ||
Sbjct 970 ACTCTGTTATCTCTTGCCCAAAAACCCTGCAACCGAGAAGAGTGCACTGAGGATTGGAAG 1029
Query 1038 GAGACTCAACCCAAGAGAACCCAATTACATTCAAA-CTACTGTAGAGCCGAGCAACGAAA 1096
| || |||||||||||||||||||||||||||||| || | ||||||| ||||| |||||
Sbjct 1030 G-GATTCAACCCAAGAGAACCCAATTACATTCAAACCT-CCGTAGAGCTGAGCAGCGAAA 1087
Query 1097 CAGTTGATCTCAGGCATCAGGACATGGATGAGAGGAAGAAAGCAGAGGAGTGGATGATTG 1156
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1088 CAGTTGATCTCAAGCATCAGGACATGGATGAGAGGAAGAACGCAGAGGAGTGGATGATTG 1147
Query 1157 ATTATGCTCTGCAACACACCGTAAGTAAACTTGTTGTAGAAAGGAAGAAGGATGTGGCAT 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 ATTATGCTCTGCAACACACCGTAAGTAAACTTGTTGTAGAAAGGAAGAAGGATGTGGCAT 1207
Query 1217 TGCTCGTTGAGGCATTTGAAACAACAGTACCTAAATAA 1254
||||||||||||||||||||||||||||||||||||||
Sbjct 1208 TGCTCGTTGAGGCATTTGAAACAACAGTACCTAAATAA 1245
Score = 75.0 bits (40), Expect = 1e-12
Identities = 42/43 (98%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 699 AGAGATAGTGAGCTTACTAGAAGGTGAAGGCATTGAATCATGT 741
|||||| ||||||||||||||||||||||||||||||||||||
Sbjct 654 AGAGATGGTGAGCTTACTAGAAGGTGAAGGCATTGAATCATGT 696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46853064993
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5