BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54600.1
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938383 jgi|Araly1|938383|scaffold_502574.1 2001 0.0
> Ahg938383 jgi|Araly1|938383|scaffold_502574.1
Length=1244
Score = 2001 bits (1083), Expect = 0.0
Identities = 1178/1225 (96%), Gaps = 2/1225 (0%)
Strand=Plus/Plus
Query 190 ATGGGATCAATGGCTCAGAAATCGGTTTTGATGTTATGCGGAGAGTTCATGGAAGCCTAC 249
||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||
Sbjct 21 ATGGGATCAATGGCTAATAAATCAGTTTTGATGTTATGCGGAGAGTTCATGGAAGCCTAT 80
Query 250 GAGACTATAGTACCTCTCTACGTCCTCCAAGCGTTTGGTGTTAGCGTCCACTGCGTTTCT 309
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 81 GAGACTATAGTACCTCTCTACGTCCTCCAAGCGTTTGGCGTTAGCGTCCACTGCGTTTCT 140
Query 310 CCTGGTCGCAAAACTGGCGACAAGTGCGTCATGGCCGCTCACGATCTCCTTGGCCTCGAG 369
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 141 CCTGGTCGCAAAACTGGCGACAAGTGCGTCATGGCTGCTCATGATCTCCTTGGCCTCGAG 200
Query 370 ATATACACCGAACTGGTGGTTGACCATCTAACACTAAACGCTAACTTCGATGGCGTCATC 429
|||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 201 ATATACACCGAATTGGTGGTTGACCATCTAACACTAAACGCAAACTTCGATGACGTCATC 260
Query 430 CCCGACCAATACGACGCCATCATCATTCCCGGTGGACGTTTCACGGAACTTTTGAGCGCC 489
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 CCCGACCAATACGACGCAATCATCATTCCCGGTGGACGTTTCACGGAACTTTTGAGCGCC 320
Query 490 GACGAGAAATGCGTGAGTCTTGTTGCTAGATTCGCCGAACTCAAGAAGCTCATCTTCACG 549
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 321 GACGAGAAATGCCTGAGTCTTGTGGCTAGATTCGCCGAACTCAAGAAGCTCATCTTCACG 380
Query 550 AGCTGCCACAGCCAGCTGTTTCTTGCGGCGGCAGGTCTGCTCACCGGTGGAATGAAGTGC 609
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 381 AGCTGCCACAGTCAGCTGTTTCTCGCGGCGGCGGGTCTGCTCACCGGTGGAATGAAGTGC 440
Query 610 ACGGCGTTCGAAAGCATGAAACCGTTTATCGAGCTCTCCGGCGGCGCATGGTGGCAACAG 669
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 441 ACGGCGTTCGAAAGCATGAAACCGTTGATAGAGCTCTCCGGCGGCGCGTGGTGGCAACAG 500
Query 670 CCTGGAGTCCAGACCCTTTTCGAAATCACTGATTGTGTCAAGGACGGCAGTTTCATGTCC 729
|||||||||||| |||||||||| || ||||||||||||||||||||| |||||||||||
Sbjct 501 CCTGGAGTCCAGTCCCTTTTCGACATAACTGATTGTGTCAAGGACGGCTGTTTCATGTCC 560
Query 730 ACTATGGGGTGGCCAACGCTTGGCCATAGTCTCAAAGTTTTGTTAGAATCACTTGGCTCC 789
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 561 ACTATGGGGTGGCCAACGCTTGGCCACAGTCTCAAAGTTTTGTTTGAATCACTTGGCTCC 620
Query 790 AAGATTTCTAGCTCTAAAGAGAATCATCAGACTTCTTTGCTTTTCTTGATTGGGGATTGT 849
||||||| |||||||||||||||||| ||| ||||||||||||||||||| |||||||||
Sbjct 621 AAGATTTGTAGCTCTAAAGAGAATCACCAGCCTTCTTTGCTTTTCTTGATCGGGGATTGT 680
Query 850 GTTGAAGATTATAGTATCAACGTACCATTTAAAGCGTTTCAAGCTTTGGGATGTAAAGTG 909
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 681 GTTGAAGATTATAGTATCAATGTACCATTTAAAGCGTTTCAAGCTTTGGGATGTAAAGTG 740
Query 910 GATGCAGTGACGCCAACCAAGAAGAGAGGTGAGAAATGCGCTACAATCGTACACGACCTT 969
|| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 741 GACGCAGTGACGCCAACCAAGAAGAGAGGTGAGAAATGTGCTACAATCGTTCACGACCTT 800
Query 970 GAAGACGGACGGCAACTTCCTACTGAGAAGTTTGGTCACAACTTCTATGTGACCGTTGCG 1029
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 GAAGATGGACGGCAACTTCCTACTGAGAAGTTTGGTCACAACTTCTATGTGACCGTTGCG 860
Query 1030 TGGGATGATGTCTCTGTGGATGATTACGACTGCATTGTGGTTCCCGGAGGAAGATCTCCG 1089
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 861 TGGGATGATGTCTCTGTCGATGATTACGACTGCATTGTGGTTCCCGGAGGAAGATCTCCA 920
Query 1090 GAGCTCTTGGTGATGAACCCCAAGGCCGTCGAATTGGTCAGAAAGTTTGTTGAGAAAGGC 1149
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 921 GAGCTCTTGGTGATGAACCCCAAGGCTGTCGAATTGGTCAGAACGTTTGTTGAGAAAGGC 980
Query 1150 AAGTTTGTTGCTGCCATTGGAATGGGAAATTGGCTACTTGCCGCCACAGGCGCCCTTAAG 1209
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 981 AAGTTTGTTGCTGCCATTGGAATGGGAAATTGGCTACTTGCCGCGACAGGCGCTCTTAAG 1040
Query 1210 AAGAAGAGATGTGCAAGTAGTTATGGGACAAAGGTGGCTGTGAAGGTTGCTGGTGGTGAG 1269
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1041 AAGAAGAGATGTGCAAGTAGTTATGGGACAAAGGTGGCTATGAAAGTTGCTGGTGGTGAG 1100
Query 1270 ATCGTGGAATCTGAACGGTGCGTGACCGACGACAAGCTGGTCACAGCCGCATCAACTTCC 1329
||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1101 ATCGTGGAATCAGAACGGTGTGTGACCGACGACAAGCTGATCACAGCCGCATCAACTTCC 1160
Query 1330 GATCTTCCTGCCTTTTTGTATGCATTGTCGACTGCACTTGGTCTCTCTGTTGTATTCTAA 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 GATCTTCCTGCCTTTTTGTATGCATTGTCGACTGCACTTGGTCTCTCTGTTGTATTCTAA 1220
Query 1390 TGTCAAGTGGTGCTTTAAC-GTCTA 1413
||||||||||||||||| | |||||
Sbjct 1221 TGTCAAGTGGTGCTTTA-CTGTCTA 1244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59687413915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5