BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54620.1
Length=1469
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938385 jgi|Araly1|938385|scaffold_502576.1 2037 0.0
> Ahg938385 jgi|Araly1|938385|scaffold_502576.1
Length=1255
Score = 2037 bits (1103), Expect = 0.0
Identities = 1206/1255 (96%), Gaps = 9/1255 (1%)
Strand=Plus/Plus
Query 53 AGGCGATTGGGTAAGCGATGCACATCGTCTTCTCTGTCGATGATTTGACCGAATCCTTCT 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 AGGCGATTGGGTAAGCGATGCACATCGTCTTCTCTGTCGATGATTTGACCGAATCCTTCT 63
Query 113 GGCCTGTTCCCGCTCCGGCGCCGTCGCCGGGATCGTCATCGACTCCGTCACCGACGCAGA 172
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 64 GGCCTGTTCCCGCTCCGGCGCCGTCTCCGGGATCGTCATCGACTCCGGCACCGACGCAGA 123
Query 173 ACGTGGCGGATGGGATGACTCGAAGTCAATCGGAGTGGGCGTTCCACAGGCTTATCAATG 232
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 124 ACGTGGCGGATGGGATGACTCGAAGTCAATCGGAGTGGGCGTTCCACAGGCTTCTCAATG 183
Query 233 AGTTGTCTGGTTCCGATTCGAGCCCTACGACTAACACAATCGAGAGATCACCTCCACCGG 292
|||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 184 AGTTATCCGGTTCCGATTCGAGCCCTACGACTAACGCAATCGAGAGATCACCTCCACCGG 243
Query 293 TTCAGTCTCTTTCGAGATTAGAAGAAACCGTTGACGAAACCGAAGATGTTGTTGAGATTC 352
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 244 TTCAGTCTCTTTCGAGATTAGAAGAAACCGTTGACGAAACCGAAGATGTTGTCGAGATTC 303
Query 353 AGAAACCGCAGAATCATCGACGGCTCCCTGTTGATGATCAAGGGAAGAATCGGAATCGTG 412
||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||
Sbjct 304 AGAAACCGCAGAATCATCGACGGCTTCCTGCGGATGATCAAGGGAAGAATCGGACTCGTC 363
Query 413 CTCCGTCGTCTGATCCGGTT-GATTCTTCAGCTCCTGTTGTTGTTGATCCTAATCAGTAT 471
|||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||||||
Sbjct 364 CTCCGTCGTCTGATCC-GTTGGATTCTTCAGCTGCTGGGGTTGTTGATCCTAATCAGTAT 422
Query 472 CATGCGATTCTTAAGAGCAAGCTCGAGCTTGCTTGCGCTGCTGTTGCTCGTCGTGTGGGA 531
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 CATGCGATTCTTAAAAGCAAGCTCGAGCTTGCTTGCGCTGCTGTTGCTCGTCGTGTGGGA 482
Query 532 ACTGTGAAACCGGAAGATTCGAGTGCTTCAGCTAGCAATCAAAAACAAGCTCAAGGCTCC 591
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 483 ACTGTGAAACCGGAAGATTCAAGTGCTTCAGCTAGCAATCAAAAGCAAGCTCAAGGCTCC 542
Query 592 ATTGTGGCACAAACCTCACCTGGTGCTTCATCTGTTAGATTTTCTCCCACAACAAGCACG 651
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 543 ATTGTGGCACAAACCTCACCTGCTGCTTCATCTGTTAGATTTTCTCCCACAACAAGCACG 602
Query 652 CAAAAGAAACCTGATGTTCCAGCCAGACAAACT---AGTATTTCATCACGAGATGATTCT 708
||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 603 CAAAAGAAACCAGATGTTCCAGCCAGACAAACTACCAGTATTTCATCAAGAGATGATTCT 662
Query 709 GATGACGATGATCTTGATGGAGACGCAGATAATGGAGATCCTACTGATGTGAAGCGTGCT 768
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 663 GATGACGATGATCTTGATGGAGACGCAGATAATGGCGATCCTACTGATGTGAAGCGTGCT 722
Query 769 AGGAGGATGCTCTCAAACCGAGAATCCGCTAGGCGCTCTAGGAGAAGAAAGCAAGAACAA 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 AGGAGGATGCTCTCAAACCGAGAATCCGCTAGGCGCTCTAGGAGAAGAAAGCAAGAACAA 782
Query 829 ATGAATGAATTTGATACACAGGTAGGCCAATTAAGAGCCGAGCATTCAACTTTAATTAAT 888
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 783 ATGAATGAATTTGATACGCAGGTAGGCCAATTAAGAGCTGAGCATTCAACTTTAATTAAT 842
Query 889 CGTCTTAGTGACATGAATCATAAGTATGATGCAGCTGCTGTTGACAACAGAATTCTAAGA 948
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 843 CGTCTTAGTGACATGAATCATAAGTATGATGCAGCTGCTGTTGACAACAGAATTTTAAGA 902
Query 949 GCTGATATCGAAACTTTGAGAACAAAGGTTAAGATGGCAGAGGAAACTGTGAAAAGAGTG 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 GCTGATATCGAAACTTTGAGAACAAAGGTTAAGATGGCAGAGGAAACTGTGAAAAGAGTG 962
Query 1009 ACAGGAGTGAACCCTTTGCATTGGTCAAGACCAAACATGGGCATACCATTCAGCAACACA 1068
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 963 ACAGGAGTGAACCCTTTGCATTGGTCAAGACCAAACATGGGCGTACCATTCAACAACACA 1022
Query 1069 CCGAGTGCTTCCTCTAGTATTCCGCCAAACTCTAACCACATTTTGAAACCAGCAAATTC- 1127
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 1023 CCGAACGCTTCCTCTAGAATTCCGCCAAACTCTAACCACATTTTGAAACCAGCAA-TCCC 1081
Query 1128 AAGTACCAACACCAGTGCTGGTTTAGCA-CAAAATCAGAGAGTGGAGACGGCAAATTTCT 1186
|||||||| ||||||||| ||||||||| |||| ||||||||| ||||||||||||||||
Sbjct 1082 AAGTACCACCACCAGTGCCGGTTTAGCATCAAA-TCAGAGAGTAGAGACGGCAAATTTCT 1140
Query 1187 TGCCGGAACAGGTGAACCGTGAAGGCATGCAGAATCCATTTGCTCCTGATTCTAATCTGT 1246
|||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1141 TGCCGGAACATGTTAACCGTGAAGGCATGCAGAATCCATTTGCTCATGATTCTAATCTGT 1200
Query 1247 ATGAAACCCTACCCCATTGGAATCACAAGCATTAACCAGAAAAAGAGTCATTGGT 1301
|||||||||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 1201 ATGAAACCCTACCCCATTGGAATCACAAGCATTAACCATAAGAAGAGTCAATGGT 1255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54964223535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5