BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54630.1
Length=1932
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485867 jgi|Araly1|485867|fgenesh2_kg.5__1859__AT3G54630.1 2623 0.0
> Ahg485867 jgi|Araly1|485867|fgenesh2_kg.5__1859__AT3G54630.1
Length=1820
Score = 2623 bits (1420), Expect = 0.0
Identities = 1667/1786 (93%), Gaps = 17/1786 (1%)
Strand=Plus/Plus
Query 104 TTATCTGT-aaaaagcaaaaaaGAGATGAGAGGCGGAGCCGCGGGAAAGAGAAGAACGAC 162
|||||||| ||||||| |||||||||||||||| |||||| |||||||||||||||||||
Sbjct 45 TTATCTGTAAAAAAGC-AAAAAGAGATGAGAGGAGGAGCCACGGGAAAGAGAAGAACGAC 103
Query 163 GGTGGGTTTCGGCGGAGCGCCGCCGCCACCTCCACCATCAATCGAGCAACAACGTCACCT 222
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 104 GGTGGGTTTCGGCGGAGCGCCGCCGCCACCACCACCATCAATCGAGCAACACCGTCACCT 163
Query 223 CTTTAACTCAAGAGACTCCGACGCCAGTTTCGCCAGCAGCCGTCCTTCATCAATCGGTTT 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 CTTTAACTCAAGAGACTCCGACGCCAGTTTCGCCAGCAGCCGTCCTTCATCAATCGGTTT 223
Query 283 AGGCGGCCGAGGAGCCTCCGATGACAGATCTTCGATGATTCGATTCATTAACGCCTTCCT 342
|||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 224 AGGCGGCC---GAGCCTCCGATGACAGATCTTCGATGATTCGATTCACCAACGCCTTTCT 280
Query 343 CTCCACACATAACTTC-CCGATCTCTATCCGCGGTAATCCTGTTCCTTCTGTCAAAGACA 401
|||| | |||||| || | |||||||||||||| ||||||||||||||||||||||||||
Sbjct 281 CTCCTCTCATAAC-TCTCTGATCTCTATCCGCGCTAATCCTGTTCCTTCTGTCAAAGACA 339
Query 402 TCTCCGAAACCCTAAAATTC-TTGCTCT-CAGCTTTAGATTACCCTTGCGATTCCATCAA 459
|||||||||||||||||||| || |||| || ||||||||||||||||||||||||||
Sbjct 340 TCTCCGAAACCCTAAAATTCATT-CTCTCCA-AATTAGATTACCCTTGCGATTCCATCAA 397
Query 460 ATGGGACGAGGATCTCGTCTTCTTTCTCAAATCGCAGAAATGTCCTTTTAAGATCACCAA 519
|||||||||||||||||||||||| |||||||||||||||||||| || || ||||| ||
Sbjct 398 ATGGGACGAGGATCTCGTCTTCTTCCTCAAATCGCAGAAATGTCCATTCAAAATCACTAA 457
Query 520 ATCTAGCCTCAAAGCTCCAAATACGCCTCACAATTGGCCTACTGTTCTCGCCGTTGTTCA 579
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 458 ATCTAGCCTCAAAGCTCCCAATACGCCTCACAATTGGCCTACTGTTCTCGCCGTTGTTCA 517
Query 580 CTGGTTAGCTGAGCTTGCTCGTTTCCATCAACATCTAGT-ATCTAATTCCACCTCCGTAC 638
|||||| | |||||| ||||||||||||||||||||| | ||| ||||||||||| | ||
Sbjct 518 CTGGTTGGTTGAGCTCGCTCGTTTCCATCAACATCTA-TCATCCAATTCCACCTCTGAAC 576
Query 639 CCGAAGATAACTCCATGAATTTCTTCGCGATTCAAAGCTTTGGTCACTTCATTCGCGGCG 698
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 577 CCGAAGCTAACTCCATGAATTTCTTCGCGATTCAAAGCTTTAGTCACTTCATTCGCGGCG 636
Query 699 AGGATGATAAGGTTAACGATTTAGATTCTCAATTTTTGGGTAAATTGGAAGCGGAGAAGA 758
|||||||||| |||||||| ||||||||| ||||||||||||||||||||||||| ||||
Sbjct 637 AGGATGATAAAGTTAACGAGTTAGATTCTGAATTTTTGGGTAAATTGGAAGCGGAAAAGA 696
Query 759 CTAGCGTCGCTGAAACTATCTCTGGTTGTGAGAAAATCTCCGGTGAATTGGAGGCTAAAC 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 CTAGCGTCGCTGAAACTATCTCTGGTTGTGAGAAAATCTCCGGTGAATTGGAGGCTAAAC 756
Query 819 TTGAGTCACTGAGGAAAGGTCCTTCGAAGAAAGAGTCTCTGGAGAAAGTTAAAGCCGATT 878
|||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||
Sbjct 757 TTGAGTCACTGAGGAAAGGTCCGTCGAAGAAAGAGTCTCTGGGGAAAGCTAAAGCCGATT 816
Query 879 TGGAGAATGACGTAAACAAGTTCCGAACTATTGTTGTGGAGTATACTGATAGGAATCCAG 938
||||||||||||| |||||||||||||||||||||| ||| |||||||| | || || ||
Sbjct 817 TGGAGAATGACGTGAACAAGTTCCGAACTATTGTTGCGGAATATACTGAAAAGACTCAAG 876
Query 939 CGATGGAGAAAGTTGTGGAGGAGAAAGCTAAGGAGCTCAAAGCTAAGGAAGAAGAGAGAG 998
|| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 877 CGCTGGAGAAAGTTGTGGAGGAGAAAGTTAAGGAGCTTAAAGCTAAGGAAGAAGAGAGAG 936
Query 999 AGCGAATCTCTGTAGAGAATAAGGAGTTGAAGAAGAGTGTGGAGCTTCAGAACTTTAGCG 1058
|||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 937 AGCGAATCTCTGAAGAGAATAAAGAGTTGAAGAAGAGTGTGGACCTTCAGAACTTTAGCG 996
Query 1059 CG-GCGGATGTAAATAGGATGAGAAGAGAGTTACAAGCTGTGGAAAGAGATGTTGCGGAT 1117
| | | ||||| | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 997 CCAGAG-ATGTAGAGAGGATGAGAAGAGAGTTACAAGCTGTGGAAAGAGATGTTGCAGAG 1055
Query 1118 GCTGAGGTTGCTAGAGATGGTTGGGATCAGAAAGCTTGGGAACTCAATTCACAGATTAGG 1177
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1056 GCTGAGGTTGCTAGAGATGGTTGGGATCTGAAAGCTTGGGAACTCAATTCACAGATTGGG 1115
Query 1178 AATCAGTTTCATCAGATTCAGACACTTGCCATTGACTGCAACCAAGCTCTCAGGAGATTG 1237
||||||||||||||||||||||||||| ||||||| || ||||||| ||| |||||||||
Sbjct 1116 AATCAGTTTCATCAGATTCAGACACTTTCCATTGATTGTAACCAAGTTCTTAGGAGATTG 1175
Query 1238 AAGCTTGATATTCAGTTCGCTGTTAACGAGAGAGGGGAAACACCTGCAGCGGTGATGGGT 1297
|||||||||||||||||| |||| || ||||||||| ||||||||||| |||||| |||
Sbjct 1176 AAGCTTGATATTCAGTTCACTGTAAATGAGAGAGGGAAAACACCTGCAAAGGTGATTGGT 1235
Query 1298 GTGGATTATAAATCGGTGGTGAAGCCAGCTCTGTGTTCGTTGTGCGATGGGATCAAAGGA 1357
|||||||||||||| |||||||||||||||||||||||| ||| ||||||||| ||||||
Sbjct 1236 GTGGATTATAAATCTGTGGTGAAGCCAGCTCTGTGTTCGCTGTACGATGGGATTAAAGGA 1295
Query 1358 AGCTCGGCGGAGAAAGTGGAGGAATTGGTCACTTTACAGCACCATAAGTCTGAAATGGCT 1417
|||| | |||||||| ||||||| ||||||||||||||||| | |||||||||||||
Sbjct 1296 AGCTTGACGGAGAAAATGGAGGAGTTGGTCACTTTACAGCAAGAGGTGTCTGAAATGGCT 1355
Query 1418 TCGAAGATCGAATCCAAAAGGAGTCTTCTTGGGTCAATTCAGTTGCAGATCAATGACCTC 1477
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1356 TCGAAGATCGAATCCAAAAAGAGTCTTCTTGGGTCAATTCAGTTGCAGATCAATGAACTC 1415
Query 1478 GAAGAAAAGATGAAGTTGGTGAAGAAGGAAACTCAGGAGTTGAGTACAAAATGTGATTTG 1537
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1416 GAAGAAAAGATGAAGTTGGTGAAGAAGGAAACTCAGGAGTTGACTACAAAATGTGACTTG 1475
Query 1538 GAGGCGAAAACATTGGTTGAGAGTGTGAAAGCTGAGGCTTTGAATCTGGAGGTTGTGGAG 1597
|| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1476 GAAGCGAAAACATTGGTTGAGAGTGTGAAAACGGAGGCTTTGAATCTGGAGGTTGTGGAG 1535
Query 1598 AAAGAAGCTGCTGAGTTTGTAAAAGCTTCGGAGCTTAGATTGCAAGAAGCAGTGAAGGAG 1657
|||||||||||||||||| |||||||||||||| | |||||||||||||||| ||| ||
Sbjct 1536 AAAGAAGCTGCTGAGTTTTTAAAAGCTTCGGAGGTAAGATTGCAAGAAGCAGAAAAGCAG 1595
Query 1658 AGTGAAGAGGAGGTCCAAGCATGTGCTGCACAACTCTTTGCACTTATCGATTCGATATCG 1717
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1596 AGTGAAGAGGAGGTCCAAGCATGTGCTGCACAACTATTTGCACTTATCGATTCGATATCG 1655
Query 1718 AAACAGAAAGAGTACATGGATTCGAAGATATCGGAGATCAAAACCGGTGTTGCTGATACT 1777
|||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||
Sbjct 1656 AAACAGAAAGAGTACATGGATTTGAAGATATTGGAGATCAAAACTGGTGTTGCTGATACT 1715
Query 1778 GCCAGTGCTGTTTCAGAGATATACAAAGCCAACTTCAAGAAGAACCTTGGTATCTAGTGG 1837
||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||| ||
Sbjct 1716 GCCAGTGCTGTTTCAGAGATATATAAAGCCAACTTCAAGAAGCACCTAGGTATCTAG-GG 1774
Query 1838 -TTGGAATCAACTGAGCCAAGAGATTGTTAAAAGCGTGAGTAATTC 1882
|||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1775 ATTGGCATCAACTGAGCCCAGAGATTGTTAAAAGCGTGAGTAATTC 1820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72600006970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5