BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54640.1
Length=1342
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485868 jgi|Araly1|485868|fgenesh2_kg.5__1860__AT3G54640.1 1929 0.0
> Ahg485868 jgi|Araly1|485868|fgenesh2_kg.5__1860__AT3G54640.1
Length=1301
Score = 1929 bits (1044), Expect = 0.0
Identities = 1233/1319 (93%), Gaps = 34/1319 (3%)
Strand=Plus/Plus
Query 1 GATTTTTACAAAACAAAGATGGAAGA-GCAAGTCAGAAGTCAAAATAGCTCGAAGATGTA 59
|||||||||||| |||| |||||||| | ||||||||||||||||||||||||| |||||
Sbjct 1 GATTTTTACAAACCAAAAATGGAAGATGAAAGTCAGAAGTCAAAATAGCTCGAAAATGTA 60
Query 60 AGTGACGGCGCCTGAATACTCTTGGCTGGTAGATTTCACCTA-C-C--TC-At-ttt-tt 112
||||||||| |||||||||||||||||||||||||||||||| | | || | ||| ||
Sbjct 61 AGTGACGGCTCCTGAATACTCTTGGCTGGTAGATTTCACCTACCTCTTTCTTTCTTTCTT 120
Query 113 tCATATATCTCAAACGTGGAATCGCTGTTACTCAGTTTTTATATATAAAAATAAACACTC 172
||||||||||||||||||||||||||||||||||| |||| ||||| | ||| |
Sbjct 121 TCATATATCTCAAACGTGGAATCGCTGTTACTCAG-TTTT-TATAT----A-AAA-A--- 169
Query 173 GCTCTTCTTCAACCAAACTCATTTCCAAAATTCCACAAAGTTTTTCAAATGGCGATTGCT 232
||||||||||||| ||||||||||| ||||||||| ||||| |||||||||||||
Sbjct 170 -----TCTTCAACCAAACCCATTTCCAAAA-TCCACAAAGCTTTTCCAATGGCGATTGCT 223
Query 233 TTCAAATCCGGCGTCTTCTTCCTCCAATCCCCAAAATCTCAAATTGGATTCCGCCA---T 289
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 224 TTCAAATCCGGCGTCTTCTTCCTCCAATCCCCAAAATCCCAAATTGGATTCCGCCATGCT 283
Query 290 TCTTCTCCTCCTGATTCATCGCTTTCTTTCAAGAGATTCACTCCCATGGCTTCTCTCTCC 349
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 TCTTCTTCTCCTGATTCATCGCTTTCTTTCAAGAGATTCACTCCCATGGCTTCTCTCTCC 343
Query 350 ACCTCTTCTCCTACTCTCGGTCTCGCTGATACTTTCACACAGCTCAAAAAACAAGGCAAA 409
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 344 ACCTCTTCTCCTACTCTCGGTCTCGCTGATACTTTCACCCAGCTCAAAAAACAAGGCAAA 403
Query 410 GTAGCATTCATACCATATATCACAGCTGGTGATCCGGATCTCTCTACTACTGCTGAAGCA 469
|||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 404 GTAGCATTCATACCGTATATCACAGCTGGTGATCCAGATCTCTCCACTACTGCTGAAGCA 463
Query 470 TTGAAAGTTCTTGATGCTTGTGGTTCTGACATAATCGAATTGGGTGTTCCTTACTCTGAC 529
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 464 TTGAAAGTTCTTGACGCTTGTGGCTCTGACATAATCGAATTGGGTGTTCCTTACTCTGAT 523
Query 530 CCTTTAGCTGATGGACCTGTTATTCAGGCTGCGGCAACAAGGTCGTTGGAGAGGGGAACA 589
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 CCTTTAGCTGATGGACCTGTTATTCAGGCTGCGGCAACAAGGTCGTTGGAGAGGGGAACC 583
Query 590 AACCTCGATAGCATCCTTGAGATGTTGGATAAGGTTGTTCCACAAATATCTTGTCCGATT 649
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 AACCTCGATAACATCCTTGAGATGTTGGATAAGGTTGTTCCACAAATATCTTGTCCGATT 643
Query 650 TCGTTGTTCACGTATTACAACCCGATTCTTAAACGTGGGTTGGGGAAGTTCATGTCCAGC 709
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 644 TCGTTGTTCACGTATTACAACCCGATTCTTAAACGTGGATTGGGGAAGTTCATGTCTACC 703
Query 710 ATCAGAGCTGTTGGTGTACAGGGACTTGTGGTTCCCGATGTTCCTCTTGAGGAAACTGAG 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 ATCAGAGCTGTTGGTGTACAGGGACTTGTGGTTCCCGATGTTCCTCTTGAGGAAACTGAG 763
Query 770 ATGCTGAGAAAAGAAGCCCTCAACAACGACATTGAGCTGGTCCTACTCACTACACCAACC 829
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 764 ATGCTGAGAAAAGAAGCCCTCAACAACGACATTGAGCTGGTCCTACTTACTACACCAACC 823
Query 830 ACACCAACAGAGCGAATGAAGCTAATTGTTGATGCGTCAGAAGGATTTATTTACCTTGTG 889
|||||||||||| ||||||||| ||||||||| | ||||||||||||||||||||| |||
Sbjct 824 ACACCAACAGAGAGAATGAAGCGAATTGTTGACGTGTCAGAAGGATTTATTTACCTCGTG 883
Query 890 AGCTCAATTGGAGTGACTGGTGCACGATCATCTGTAAGCGGAAAGGTTCAGTCGCTCTTG 949
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 884 AGCTCAATTGGAGTGACTGGTGCACGAGCATCTGTAAGCGGAAAGGTTCAGTCGCTCTTG 943
Query 950 AAGGATATCAAAGAGGCGACAGACAAGCCGGTGGCAGTCGGTTTTGGAATATCAAAGCCG 1009
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 944 AAGGATATCAAAGAGGCGACAGACAAGCCAGTGGCAGTCGGTTTTGGAATATCAAAGCCG 1003
Query 1010 GAGCATGTGAAACAGATAGCTGGATGGGGAGCTGATGGAGTGATCGTAGGCAGTGCAATG 1069
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1004 GAGCATGTGAAACAGATAGCTGGATGGGGAGCTGATGGAGTGATCGTAGGCAGTGCGATG 1063
Query 1070 GTAAAGCTATTGGGTGATGCAAAGTCGCCAACTGAAGGACTTAAGGAGCTTGAGAAACTA 1129
|| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1064 GTGAAGCTATTGGGGGATGCAAAGTCGCCAACGGAAGGACTGAAGGAGCTTGAGAAACTC 1123
Query 1130 ACCAAGTCTCTTAAATCTGCTCTTCTTTGAAACACAAACATTTGCAGACAACATC-TTTA 1188
||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1124 ACCAAGTCTCTCAAATCTGCTCTTCTTTAAAACACAAACATTTGCAGACAACATCCTTTC 1183
Query 1189 GATTGTGTTTTTGATTATTATCGGTGTGTGACAATGATGTCTCAATCTTTTGATACATTT 1248
|| |||| ||||||| ||| |||| ||||||||||| ||||||||||| |||||||
Sbjct 1184 TTTT-TGTTGCTGATTATAATCAATGTGGGACAATGATGTATCAATCTTTTGTTACATTT 1242
Query 1249 CAAGTATGATT-AATAAGTTACTGTGACTCAAGCCACA--CAA-CCAGTTGCTCGGTTT 1303
||||||||||| |||||||||| ||||||||||||||| ||| |||||||||| ||||
Sbjct 1243 CAAGTATGATTTAATAAGTTACGGTGACTCAAGCCACAAACAAACCAGTTGCTCTGTTT 1301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50207881689
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5