BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54650.1
Length=2052
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485869 jgi|Araly1|485869|fgenesh2_kg.5__1861__AT3G54650.1 3262 0.0
> Ahg485869 jgi|Araly1|485869|fgenesh2_kg.5__1861__AT3G54650.1
Length=1970
Score = 3262 bits (1766), Expect = 0.0
Identities = 1906/1974 (97%), Gaps = 8/1974 (0%)
Strand=Plus/Plus
Query 30 AAATCTCACGATGCAACCTCAGCCGCATATTTCTCCGAACACCGCAACTGCCGCGATCTC 89
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 AAATCTCACGATGCAACCTCAGCCGCATATTTCTCCGACCACCGCAACTGCCGCGATCTC 60
Query 90 AGCCGCGCTTGAATCTCAGCGCAGT-AGAAAAAACCGAGGAAGTTACAATTGCGGTAGAT 148
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 61 AGCCGCGCTTGAATCTCAGCGC-GTCCGAAAAAACCGAGGAAGTTACAATTGCGGTAGAT 119
Query 149 GTGGTCAACCTAAGAAAGGCCATGTCTGTCTTTTAACTGCTCCACCTGATATTCCCACTA 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GTGGTCAACCTAAGAAAGGCCATGTCTGTCTTTTAACTGCTCCACCTGATATTCCCACTA 179
Query 209 CTCCGATCGCTTCTGAGCCAGTGAGCTGCATCTCCGCCGCCGCATCTTCTTCCCGTTCTA 268
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 180 CTCCGATCGCTTCTGAGCCAGTGAGCTGTATCTCCGCCGCCGCATCTTCTTCCCGTTCTA 239
Query 269 CTGTCTTATCTTTAACAGCGGCGCCGTCATCGCGACAGACCTTCACTCACTTACGCCGAG 328
|||||||||| ||||| ||||||||||| ||||| ||| | ||||||||||||||||| |
Sbjct 240 CTGTCTTATCCTTAACGGCGGCGCCGTCGTCGCGTCAGTCTTTCACTCACTTACGCCGCG 299
Query 329 CTTTATCGTTCGATGACGTCGATGCGCGTAATTCACTCGATGAATCCGATCTGGATGCTG 388
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 300 CTTTATCTTTCGATGACGTCGATGCGCGTAATTCACTGGATGAATCCGATCTGGATGTTG 359
Query 389 CATCGATGGATCTGGATCTACAATTGGATACGGATATTGTTCAGCCTGGGAGGTTTCATG 448
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 360 CATCGGCGGATCTGGATCTACATTTGGATACGGATATTGTTCAGCCTGGGAGGTTTCATG 419
Query 449 CGGTGGGTTTATGGGAGGTGCTTAAGCGGCTACCTCCGTCTAGTTTACTGATGGCGGCTA 508
|||| ||||||||||||||||||||||| || || ||||| |||||||||||||||||||
Sbjct 420 CGGTCGGTTTATGGGAGGTGCTTAAGCGCCTGCCACCGTCGAGTTTACTGATGGCGGCTA 479
Query 509 GGGTTTGCAAAGGATGGAGAGAGACATCGAGGAAGATGTGGAAAGCGGCTGAGGAGCTTC 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGGTTTGCAAAGGATGGAGAGAGACATCGAGGAAGATGTGGAAAGCGGCTGAGGAGCTTC 539
Query 569 GGATTAGGGTTCCGGAGAGAGCTCAGATTGGATACATTGGATCCTTATTACAAAAATGTC 628
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||
Sbjct 540 GGATTAGGGTTCCGGAGAGAGCTCAGATTGGATACATTGGATCTTTACTACAAAAGTGTC 599
Query 629 CTCGACTT-ATTAGACTCTCACTTAAAATCGAGAGTGATTTTGACGCGACGACTCTGGCT 687
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTCGA-TTAATTAGACTCTCACTTAAAATCGAGAGTGATTTTGACGCGACGACTCTGGCT 658
Query 688 TGCATTGCATTTTCTTGTCCTAACCTGGAGGTTTTGGAGATTACAACTTCGGGTGCAGCT 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGCATTGCATTTTCTTGTCCTAACCTGGAGGTTTTGGAGATTACAACTTCGGGTGCAGCT 718
Query 748 GTCAATAGGATTTCTGGGGATGAGCTGAGTCGGTTTGTTGCTAATAAACGAGGACTAACA 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GTCAATAGGATTTCTGGGGATGAGCTGAGTCGGTTTGTTGCTAATAAACGAGGACTAACA 778
Query 808 AGCCTTAAGATGGAAGGATGTTCCAATTTGGGAGGATTTTCCCTCTCTTCATCAAGCCTC 867
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 779 AGCCTTAAGATGGAAGGATGTTCCAACTTGGGAGGATTTTCCCTCTCTTCATCAAGCCTC 838
Query 868 TCCACTCTTTGGCTCTCGGATCTTCATTCTCTCTCAAAGATGATCTTCAACTGTCCAAAT 927
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TCCACTCTCTGGCTCTCGGATCTTCATTCTCTCTCAAAGATGATCTTCAACTGTCCAAAT 898
Query 928 CTTACGGAAATATCACTTGAATTTTCTCGCCAAGAAGATGATTCAACTGATCTTGTAACA 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CTTACGGAAATATCACTTGAATTTTCTCGCCAAGAAGATGATTCAACTGATCTTGTAACA 958
Query 988 ATGGTTGATGGTTTGGGAAGGACTTGCACTAGATTGCAGAACATCCATATAGCCTCTTTG 1047
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 959 ATGGTTGATGGTTTGGGAAGGACTTGCACTAGATTGCAGAACATTCATATAGCCTCTTTG 1018
Query 1048 AAGCTTTCACATACTGTTGTACTTTCTCTTACTGCTGTGAATTTCAGGTATTTGAGAATG 1107
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1019 AAGCTTTCACATACTGTTGTACTTGCTCTTACTGCTGTGAATTTCAGGTATTTGAGAATG 1078
Query 1108 CTCTCGCTAGTTCTTGGAATAAATATCACTGATGCATCTGTAGCTGCCATTTCCTCAGGT 1167
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||
Sbjct 1079 CTCTCGCTAGTTCTTGGAATAGATATCACCGATGCATCTGTAGCTGCCATTTCCTCAAGT 1138
Query 1168 TACAAAAACCTTGAACTGCTTGATCTGAGTGGTTCCAGCATTACTGATACTGGCCTCGGG 1227
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TACACAAACCTTGAACTGCTTGATCTGAGTGGTTCCAGCATTACTGATACTGGCCTCGGG 1198
Query 1228 ATGATCTGCGATGTCTTACCTGATACACTCTCAAAATTACTTGTTGCTCTTTGTCCCAAC 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 ATGATCTGCGATGTCTTACCTGATACACTCTCAAAATTACTTGTTGCTCTTTGTCCCAAC 1258
Query 1288 ATTACATCAAGTGGCATTCAATTTGCTACTGCTCAATTGCCCCTTCTTGAGCTGATGGAT 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ATTACATCAAGTGGCATTCAATTTGCTACTGCTCAATTGCCCCTTCTTGAGCTGATGGAT 1318
Query 1348 TGTGGCATGACTGTCTCTGATCCCAACTCAGATAATCCGACCTTTGTAGAGAATCCAAGT 1407
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1319 TGTGGCATGACTGTGTCTGATCCCAACTCAGATAATCCGACCATTGTAGAGAATCCAAGT 1378
Query 1408 CCACATAAAACACCAGGCTACAATCAAAAGATGTTTATCAAACATAAACGGCTGAAGAAA 1467
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1379 CCACATAAAACACCAGGCTACAATCAGAAGATGTTTATCAAACATAAACGGCTGAAAAAA 1438
Query 1468 CTTAGTTTGTGGGGATGCTCCAGTTTGGACGCTTTGTTCCTAAACTGCCCAGAGCTCATG 1527
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 CTCAGTTTGTGGGGATGCTCCAGTTTGGACGCTTTGTTCCTAAACTGCCCAGAGCTCATG 1498
Query 1528 GACTTGAACTTGAACTTATGCAGTAATTTGCATCCGGAGAGTCTGGTGCTACAATGTCCA 1587
||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||
Sbjct 1499 GACTTGAACTTGAACTTATGCAGCAATTTGCATCCAGAGAGTTTGGTGCTACAATGTCCA 1558
Query 1588 AAGTTACAACTTGTGTACGCATCAGGATGTCAAGGCCTATTGACCGGAGCTATCCGAAAA 1647
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||
Sbjct 1559 AAGTTACAACTTGTGTACGCTTCAGGATGTCAAGACCTATTGACCGGAGCTATCCGGAAA 1618
Query 1648 CAGGTTTCTGAAAACTTCT-CGGCTGGTGAGAACCATATGCCACGGAAACGCTTGGCTGA 1706
||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||
Sbjct 1619 CAGGTTTCTGAAAACTT-TGCGGCTGGTGAAAACCATATGCCACGGAAACGCTTGGCTGA 1677
Query 1707 TGCATCTAAAAGGATTCAAGCTTTACCTTCATTATACCAAGAAACAAGGGAAGATGGTAT 1766
||| || || |||||||||||| |||||||||||||| |||||||||||||||||| ||
Sbjct 1678 TGCGTCGAAGAGGATTCAAGCTCTACCTTCATTATACGAAGAAACAAGGGAAGATGATAA 1737
Query 1767 TTATGCAGGGAAGAGAAGGAAGTTGGAGAAAGAAATGTGTACCATTATACATTAATAATC 1826
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1738 TTATGCAGGGAAGAGAAGGAAGTTGGAGAAAGAAGTGTGTACCATTATACATTAATAATC 1797
Query 1827 CTTTTATTGGACTCGTCACAATTTT-CGTCTACCATATTTATATTTACTGTACTGTGTAC 1885
|||| ||||||||| |||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1798 CTTT-ATTGGACTCATCACAATTTTTCATCTACCATATTTATATTTACTGTACTGTGTAC 1856
Query 1886 ATCAGATTATGTTGGATCACGTTCTCTTCTGTTGTTTCACTTATCAACTTTACATGTTTA 1945
||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1857 ATCTGATTATGTTGGATCACGTTCTGTTCTGTTGTTTCACTTATCAACTTAACATGTTTA 1916
Query 1946 TCATTGTTCTCCAATTGCTTCGAATAAATTGTATGATAACATTCTGTATTTGTT 1999
|| ||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1917 TCTTTGTTCTCCAATTGCTTCGAATAAACTGTATAATAACATTCTGTATTTGTT 1970
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77170836370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5