BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54660.1
Length=2196
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485870 jgi|Araly1|485870|fgenesh2_kg.5__1862__AT3G54660.1 3077 0.0
> Ahg485870 jgi|Araly1|485870|fgenesh2_kg.5__1862__AT3G54660.1
Length=2012
Score = 3077 bits (1666), Expect = 0.0
Identities = 1915/2032 (94%), Gaps = 29/2032 (1%)
Strand=Plus/Plus
Query 66 gaagaagaaTCGTGGAGATGGCTTCGACCCCGAAGCTTACCAGTACAATTTCATCATCTT 125
|||||||||||||||||||||||||||| ||||||||||| ||||||| || |||||||
Sbjct 1 GAAGAAGAATCGTGGAGATGGCTTCGACTCCGAAGCTTACTAGTACAA-TT--TCATCTT 57
Query 126 CTCCATCTCTTCAATTCCTCTGCAAAAAACTCCCAATCGCAATTCATCTACCATCATCTT 185
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 58 CTCCATCTCTTCAAATCCTCTGCAAAAAGCTCCCAATCGCAATTCATCTACCATCATCTT 117
Query 186 CTTCCTCTAGCTTTCTCTCGCTTCCTAAAACCCTAACCTCTCTCTATTCTCTCCGTCCCC 245
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 118 CTTCCTCTAGCTTTCTCTCGCTTCCTAAAACCCTAACCTCTCTCTGTTCTCTGCGTCCCC 177
Query 246 GTATCGCCCTACTCTCAAACCACCGCTATTACCACTCTCGCCGGTTTTCTGTTTGTGCCA 305
|||||||| |||||||||||||||| |||||||||||||| |||||||||||| ||||||
Sbjct 178 GTATCGCCGTACTCTCAAACCACCGGTATTACCACTCTCGTCGGTTTTCTGTTCGTGCCA 237
Query 306 GTACCGATAATGGAGCTGAATCAGACCGCCACTACGATTTTGATCTCTTCACTATCGGTG 365
|||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 238 GTACCGATAACGGAGCTGACTCAGAGCGCCACTACGATTTTGATCTCTTCACTATCGGTG 297
Query 366 CCGGAAGCGGCGGCGTCCGCGCCTCTCGCTTCGCCACTAGCTTCGGTGCATCCGCCGCCG 425
|||||||||||||||||||||| |||||| || | |||||||||||||||||||||||||
Sbjct 298 CCGGAAGCGGCGGCGTCCGCGCTTCTCGCATCTCAACTAGCTTCGGTGCATCCGCCGCCG 357
Query 426 TTTGCGAGCTTCCTTTTTCCACTATCTCTTCCGATACTGCTGGAGGCGTTGGAGGAACGT 485
|||||||||||||||||||||| ||||| || ||||| ||||||||||| ||||||||||
Sbjct 358 TTTGCGAGCTTCCTTTTTCCACCATCTCCTCTGATACAGCTGGAGGCGTCGGAGGAACGT 417
Query 486 GTGTATTGAGAGGATGTGTACCAAAGAAGTTACTTGTGTATGCATCCAAATACAGTCATG 545
||||| ||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |
Sbjct 418 GTGTACTGAGAGGATGTGTTCCAAAGAAGTTGCTTGTGTATGCGTCCAAATACAGTCACG 477
Query 546 AGTTTGAAGACAGTCATGGATTTGGTTGGAAGTATGAGACTGAGCCTTCTCATGATTGGA 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AGTTTGAAGACAGTCATGGATTTGGTTGGAAGTATGAGACTGAGCCTTCTCATGATTGGA 537
Query 606 CTACTTTGATTGCTAACAAGAATGCTGAGTTACAGCGGTTGACTGGTATTTATAAGAATA 665
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 538 CTACTTTAATTGCTAACAAGAATGCTGAGTTGCAGCGGTTGACTGGTATTTATAAGAATA 597
Query 666 TACTGAGCAAAGCTAATGTCAAGTTGATTGAAGGTCGTGGAAAGGTTATAGACCCACACA 725
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 598 TACTTAGCAAAGCTAATGTCAAGTTAATTGAAGGTCGTGGAAAGGTTATAGACCCACACA 657
Query 726 CTGTTGATGTAGATGGGAAAATCTATACTACGAGGAATATTCTGATTGCAGTTGGTGGAC 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CTGTTGATGTAGATGGGAAAATCTATACTACGAGGAATATTCTGATTGCAGTTGGTGGAC 717
Query 786 GTCCTTTCATTCCTGACATTCCAGGAAAAGAGTTTGCTATTGATTCTGATGCCGCGCTTG 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 718 GTCCTTTCATTCCTGACATTCCAGGAAAAGAGTTTGCTATTGATTCTGATGCCGCTCTTG 777
Query 846 ATTTGCCTTCCAAGCCTAAGAAAATTGCAATAGTTGGTGGTGGCTACATAGCCCTGGAGT 905
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 778 ATTTGCCTTCCAAGCCCAAGAAAATTGCAATTGTTGGTGGTGGCTACATAGCCCTGGAGT 837
Query 906 TTGCGGGGATCTTCAATGGTCTTAACTGTGAAGTTCATGTATTTATAAGGCAAAAGAAGG 965
||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 838 TTGCGGGCATCTTTAATGGTCTTAACAGTGAAGTTCATGTATTTATAAGGCAAAAGAAAG 897
Query 966 TGCTGAGGGGATTTGATGAAGATGTCAGGGATTTCGTTGGAGAGCAGATGTCTTTAAGAG 1025
| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 898 TTCTGAGGGGATTTGATGAAGACGTCAGGGATTTTGTTGGAGAGCAGATGTCTTTAAGGG 957
Query 1026 GTATTGAGTTTCACACTGAAGAATCCCCTGAAGCCATCATCAAAGCTGGAGATGGCTCGT 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 958 GTATTGAGTTTCACACTGAAGAATCCCCTGAAGCCATCATCAAAGCTGGAGATGGATTAT 1017
Query 1086 TCTCTCTGAAGACCAGCAAGGGAACTGTTGAGGGATTTTCGCATGTTATGTTTGCAACTG 1145
| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1018 TGTCTCTGAAGACCAGCAAGGGAACCGTTGAGGGCTTTTCGCATGTTATGTTTGCAACTG 1077
Query 1146 GTCGCAAGCCCAACACAAAGAACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAA 1205
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1078 GTCGCAAGCCAAACACAAAGAATTTAGGGTTGGAGAATGTTGGCGTAAAAATGGCGAAAA 1137
Query 1206 ATGGAGCAATAGAGGTTGACGAATATTCACAGACATCTGTTCCATCCATCTGGGCTGTTG 1265
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 1138 ATGGAGCAATAGAGGTTGACGAGTATTCACAGACCTCTGTTCCATCCATTTGGGCTGTTG 1197
Query 1266 GGGATGTTACTGACCGAATCAATTTGACTCCAGTTGCTTTGATGGAGGGAGGTGCATTGG 1325
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GGGATGTCACTGACCGAATCAATTTGACTCCAGTTGCTTTGATGGAGGGAGGTGCATTGG 1257
Query 1326 CTAAAACTTTGTTTCAAAATGAGCCAACAAAGCCTGATTATAGAGCTGTTCCCTGCGCCG 1385
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CTAAGACTTTGTTTCAAAATGAGCCAACAAAGCCTGATTATAGAGCTGTTCCCTGCGCCG 1317
Query 1386 TTTTCTCCCAGCCACCTATTGGAACAGTTGGTCTAACTGAAGAGCAGGCCATAGAACAAT 1445
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1318 TTTTCTCCCAGCCACCTATTGGAACAGTTGGTCTAACTGAAGAGCAGGCTATAGAACAAT 1377
Query 1446 ATGGTGATGTGGATGTTTACACATCGAACTTTAGGCCATTAAAGGCTACCCTTTCAGGAC 1505
|||||||||| ||||||| |||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1378 ATGGTGATGTCGATGTTTTCACATCAAACTTTAGGCCATTAAAGGCTACGCTTTCAGGAC 1437
Query 1506 TTCCAGACCGAGTATTTATGAAACTCATTGTCTGTGCAAACACCAATAAAGTTCTCGGTG 1565
|||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TTCCAGACCGGGTGTTCATGAAACTCATTGTCTGTGCAAACACCAATAAAGTTCTCGGTG 1497
Query 1566 TTCACATGTGTGGAGAAGATTCACCAGAAATCATCCAGGGATTTGGGGTTGCAGTTAAAG 1625
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 TTCACATGTGTGGAGAGGATTCACCAGAAATCATCCAGGGATTTGGGGTTGCAGTTAAAG 1557
Query 1626 CTGGTTTAACTAAGGCCGACTTTGATGCTACAGTGGGTGTTCACCCCACAGCAGCTGAGG 1685
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1558 CTGGTTTAACTAAGGCCGACTTTGATGCAACAGTGGGTGTTCACCCCACAGCGGCTGAGG 1617
Query 1686 AGTTTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAGGGAAAGG 1745
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1618 AGTTTGTCACTATGAGGACTCCAACCAGGAAAATCCGCAAAGACTCCTCTGAGGGAAAGG 1677
Query 1746 CAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAGAGAAGGTTGCAAAAAAGATTGTATT 1805
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1678 CAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAGAGAAGGTTGCAAAAAAGGTTGTATT 1737
Query 1806 TACGGCATTGGAGCCCCCTGATAAGGAGAACATTGTGTCTGTGAAGAAGAAG--CTTTTC 1863
|||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1738 TACGGCATTGGAGCTCCCTGACAAGGAGAACATTGTGTCTGTGAAGAAGAAGAACTTTTT 1797
Query 1864 TTTT----GGCAGAGAATATTTTTTCATAATGTCGTGTGAAGATATGATCGCTGTCCTGC 1919
|||| ||||||||||| ||||| ||||||||| ||| ||||||||| || | |||||
Sbjct 1798 TTTTTTCTGGCAGAGAATAATTTTTGATAATGTCGCGTGGAGATATGATGGCCGACCTGC 1857
Query 1920 AATACTTTTGATCGTTTGAC--ACACGACCAAATTCCTCGAGAGAGAGAGGTTGTAACTA 1977
|||||||||||||| ||||| || ||||||||||||||||||||| |
Sbjct 1858 AATACTTTTGATCGGTTGACCTACGCGACCAAATTCCTCGAGAGAG-----------C-- 1904
Query 1978 TTCCGAAAGAGCTCTAAAA-CTGAAGCTTTCAGTTCTTGTGACATCATAATGAAGGCTGT 2036
||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||
Sbjct 1905 ----GAAAGAGCTCTAAAAACTGAAGCTTTCAGTTCTTGTGACATCGTAAAGAAGGCTGT 1960
Query 2037 ATAGATATAACAGTTTCGAGTTTTATTTGGATTTGTAGTATTTTTGTTTTCT 2088
||||||| |||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 1961 ATAGATAAAACAGTTTCGAGTTTTCTTTGGATTTGTAGTTTTTTTCTTTTCT 2012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82655831650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5