BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54680.1
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485873 jgi|Araly1|485873|fgenesh2_kg.5__1865__AT3G54680.1 931 0.0
> Ahg485873 jgi|Araly1|485873|fgenesh2_kg.5__1865__AT3G54680.1
Length=1073
Score = 931 bits (504), Expect = 0.0
Identities = 702/789 (89%), Gaps = 48/789 (6%)
Strand=Plus/Plus
Query 43 aaaaaCAGAAAACGAGAAAACCAGAGATTCATCAATTCATTGATTCTTTAGTTCTTCTTC 102
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1 AAAAACAGAAAACGAGAAAACCAGAGATTCATCAATTCATTCATTGTTTAGTTCTTCTTC 60
Query 103 GTCCGTCTAACCTTAGAAACTTATAGCTACAGCGagagaagacgaagaagaataagaata 162
||| ||||||||||||||||| ||||| | | | | || || ||| |
Sbjct 61 TTCCTTCTAACCTTAGAAACTTTTAGCT--A-C--------A-G-AG-AG---AAG---A 100
Query 163 agaagaaagaaAATTGAATGGCGGCAAGAGCCAACAACAAATACACCTCTATCAACTTCA 222
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 AGAAGAAAGCAAATTGAATGGCGGCAAGAGCCAACAACAAATACACCTCTATCAACTTCA 160
Query 223 ACCACATCCTTCACAAAGATCCTCCTTCATCTTCTTCATCTTC--C-TC--C-TC-T--G 273
|||||||||||||||||||||||||||| |||||||| ||||| | || | || | |
Sbjct 161 ACCACATCCTTCACAAAGATCCTCCTTCTTCTTCTTCTTCTTCTTCATCATCATCTTCCG 220
Query 274 CTTCTTATTCCTCCGTCGCTCGTTCCAATGGCCGTATGCTCGTCCTCACCAAATCTTCCC 333
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 221 CTTCTTATTCCTCCGTCGCTCGTTCCAATGGCCGTATGCTCGTCCTCACCAAACCTTCCC 280
Query 334 CCAAACCTCTAAGATCTCCCTCCGCTGCT-CC-C-ACCACCAC---TACGACCGCACCTC 387
|||||||||| |||||||||||||||||| || | |||||||| ||||||| | ||||
Sbjct 281 CCAAACCTCTGAGATCTCCCTCCGCTGCTACCACCACCACCACCACTACGACCACGCCTC 340
Query 388 CTATCTCTACAGCTCCGAGGATTCCTTCAAATCAAGCCATCTCTGATCCAGATCCGAGTC 447
| |||||| |||||||||||||| | |||||||||||||||||||||||||||||| ||
Sbjct 341 CGATCTCTCCAGCTCCGAGGATT--T-CAAATCAAGCCATCTCTGATCCAGATCCGAATC 397
Query 448 AGATCTCTCTTCGTCCCTTAGGTCATACAGGATCTAGTTCCTCGCTTTCTTTTCCAATTC 507
|||||||||||||||||||||||||||||||| || ||||||| ||||| || |||||||
Sbjct 398 AGATCTCTCTTCGTCCCTTAGGTCATACAGGACCTGGTTCCTCTCTTTCGTTCCCAATTC 457
Query 508 GGACTCCTGAAATCAACAAGGCTCC-GGAGGTAAATGCTCCAACTCCG-GTTTCATTGTC 565
||| |||||||||| |||||| ||| |||||| |||||| ||||| ||| |||| ||
Sbjct 458 GGAATCCTGAAATCGACAAGG-TCCCGGAGGTGCCTGCTCCTGCTCCGAGTT-CATTCTC 515
Query 566 CCCGAAACCTGATCGGTTCGTGCCGCCGCATCTTAGGCCAGGTTTTGTTCGGAAAGACGA 625
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 516 CCCGAAACATGATCGGTTCGTGCCGCCGCATCTTAGGCCAGGTTTCGTTCGGAAAGACGA 575
Query 626 GAAACCTGGACTCAACTCTTCTCGAGTTAGAGATCCGAATCCGAATCTGAATCAGAGATT 685
||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||
Sbjct 576 GAAACCTGGACTCGACTCTTCTCGAGTTAGAGATCCGAATC----T--GAATCAGAGATT 629
Query 686 GCCTAACCAGGAACAGCCACGGCAGGAATATTTCGGTTATGGACAGCCCGGACGGCCCAA 745
|||||||||||||||||||||||||| ||||||||| ||||||||| ||||||| |||||
Sbjct 630 GCCTAACCAGGAACAGCCACGGCAGGGATATTTCGGGTATGGACAGACCGGACGCCCCAA 689
Query 746 ATCGGGCGGGTATGAGAGGATCCGTACGGATCCGAGAATAACCGGAAACCGACCCGGCAC 805
|||||||||||||||||||||| | || |||||||||| |||||||||||||||||||||
Sbjct 690 ATCGGGCGGGTATGAGAGGATCTGGACAGATCCGAGAACAACCGGAAACCGACCCGGCAC 749
Query 806 CTCCGGATG 814
|||||||||
Sbjct 750 CTCCGGATG 758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45023164977
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5