BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54690.1
Length=1430
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485874 jgi|Araly1|485874|fgenesh2_kg.5__1866__AT3G54690.1 2209 0.0
> Ahg485874 jgi|Araly1|485874|fgenesh2_kg.5__1866__AT3G54690.1
Length=1340
Score = 2209 bits (1196), Expect = 0.0
Identities = 1295/1343 (96%), Gaps = 5/1343 (0%)
Strand=Plus/Plus
Query 1 CTCTCAGCACAAAGCAATCACAAATCAAAGCTTTCAGAGATCCAAAAATGGGATCTCTTC 60
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1 CTCTCAGCACAAAGCAATCACAAATCAAAGCTCTCAGAGATCCAACAATGGGATCTCTTC 60
Query 61 CACCGCCATCGCTAGATTTCTCATCAATCGATCACAATTCCCTCAAAAATGGCGGATCCA 120
|||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 CACCGCCATCTCTCGATTTCTCATCAATCGATCACAGTTCCCTCAAAAATGGCGGATCCA 120
Query 121 GCCACCAAGAGATCTCTCATGATAATCTCCTCAACCTCTTCAAATCCCAGCAAGATCTTC 180
|||||||||||||||| | ||||||||||||||||||||||| ||| |||||||||||||
Sbjct 121 GCCACCAAGAGATCTCCCGTGATAATCTCCTCAACCTCTTCACATCTCAGCAAGATCTTC 180
Query 181 TCAATCACTTCTTCAAACATCTCGATCTCTCTCAAACCCTAGATTTCTCACGCATTCTCC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCAATCACTTCTTCAAACATCTCGATCTCTCTCAAACCCTAGATTTCTCACGCATTCTCC 240
Query 241 TTTCCACCACCGGTACCGTTTTCTTCACCGGCGTCGGTAAATCCGCTTTCGTAGCTAACA 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTCCACCACCGGCACCGTTTTCTTCACCGGCGTCGGTAAATCCGCTTTCGTAGCTAACA 300
Query 301 AGGTTTCACAGACGCTCGTTTCCT-TAAGCTTCCGTTCCTCTTTCCTCTCCCCTCTCGAT 359
||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||
Sbjct 301 AGGTTTCACAGACGCTCGTTT-CTCTCAGCTTCCGTTCCTCTTTCCTCTCCCCTCTCGAT 359
Query 360 GCGCTTCATGGTGACATTGGCGCTCTTTCGCCACGCGATGTTCTCGTTTTCTTCAGCAAA 419
|||||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 360 GCGCTTCACGGCGACATTGGCGCTCTTTCTCCACGTGATGTTCTCGTTTTCTTCAGCAAA 419
Query 420 TCTGGCGCCACCGAGGAGCTTCTCCGTCTTGTCCCTTGCGCTAGAGCTAAAGGAGCCTTT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCTGGCGCCACCGAGGAGCTTCTCCGTCTTGTCCCTTGCGCTAGAGCTAAAGGAGCCTTT 479
Query 480 CTGGTGTCTCTTACCTCTGTTTCTGGGAATCCACTCGCTGGTGTTTGTGATATGAATGTG 539
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 480 CTGGTGTCTCTTACCTCTGTTTCTGGGAATCCACTCGCTGGAGTTTGTGATATGAATGTG 539
Query 540 CATTTACCTCTTCAGAGAGAATTGTGTCCGTTTAATCTCGCTCCGGTGACTTCTACGGCG 599
||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CATTTGCCGCTTCTGAGAGAATTGTGTCCGTTTAATCTCGCTCCGGTGACTTCTACGGCG 599
Query 600 ATTCAGATGGTGTTTGGTGATACCATTGCCGTTGCTCTCATGGCGGCTAGAAATCTCTCC 659
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 600 ATTCAGATGGTGTTTGGTGATACCATCGCCGTTGCTCTCATGGCGGCTAAAAATCTCTCC 659
Query 660 AAGGAAGAGTATGCAGCTAATCATCCCGCCGGTAGAATCGGCAAGAGCTTAATCTTCAAG 719
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 660 AAGGAAGAGTATGCAGCTAATCATCCCGCCGGCAGAATCGGCAAGAGCTTAATCTTCAAG 719
Query 720 GTGAAAGATGTTATGAAAAAGCAAGAAGAGCTTCCTGTGTGTAAAGAAGGAGACTTGATA 779
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 720 GTGAAAGATGTTATGAAAAAGCAAGAAGAGCTTCCTGTGTGCAAAGAAGGAGACTTGATA 779
Query 780 ATGGATCAATTAGTGGAGCTAACCAGCAAAGGATGTGGTTGTTTGCTTGTGGTTGATGAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATGGATCAATTAGTGGAGCTAACCAGCAAAGGATGTGGTTGTTTGCTTGTGGTTGATGAA 839
Query 840 CATT-CTCGTTTGATCGGTACATTCACAGATGGAGATCTTCGTCGGACTCTCAAGGCTAG 898
|||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CATTAC-CGCTTGATCGGTACATTCACAGATGGAGATCTTCGTCGGACTCTCAAGGCTAG 898
Query 899 TGGAGAAGCAATATTCAAACTCAGTGTTGGAGAAATGTGCAACAGGAAGCCGAGGACAAT 958
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGGAGAAGCAATCTTCAAACTCAGTGTTGGAGAAATGTGCAACAGGAAGCCGAGGACAAT 958
Query 959 TGGACCGGAAACAATGGCAGTTGAAGCTATGAAGAAGATGGAATCACCGCCATCGCCTGT 1018
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 959 TGGACCGGAAACAATGGCTGTTGAAGCTATGAAGAAAATGGAATCACCGCCATCACCTGT 1018
Query 1019 ACAGTTTCTACCAGTGGTCAATGAAGACAACACATTGATTGGAATTGTAACATTGCATGG 1078
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1019 ACAGTTTCTACCGGTGGTCAATGAAGACAACACCTTGATTGGAATTGTAACATTGCATGG 1078
Query 1079 TTTGGTTTCAGCTGGTCTCTGAACACGAAGGTGCCTCTATATTGAGTTTTATATAGTTGA 1138
||| |||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||
Sbjct 1079 TTTAGTTTCAGCTGGTCTCTAAACACAAAGGTGCCTCTATATCGAGTTTTATATAGTTGA 1138
Query 1139 TTCTTTTACAGAAACCCAAATCGAGAATATTGGTGTAATTTGATTGATTTTCACCGCCAG 1198
|||||||||||||||||| ||| |||||||||||||||||||||||| ||||| |||||
Sbjct 1139 TTCTTTTACAGAAACCCATATCAAGAATATTGGTGTAATTTGATTGAAATTCACAGCCAG 1198
Query 1199 TGAATTGTATTGTGTCTAGTAGTACTTCATGTATTGTCCATCATTTACTCAAAGATGTGT 1258
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1199 TGAATTGTATTGTGTCTAGTAGTACTTCATGTATTGTCCATCGTTTACTCAAAGATATGT 1258
Query 1259 ATAGAGTATAAGAAGATTTCTTGTATCTTTGTCCTGCCTTACCTTCATTTTCTTCTACTC 1318
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1259 ATAGAGTATAAGAAGATTTCTTGTATCTTTGTTCTGCCTTACTTTCATTTTCTTCTACTC 1318
Query 1319 TTGCTTTCATTTTTGCCTTCAAA 1341
||||||||||||||||||| |||
Sbjct 1319 TTGCTTTCATTTTTGCCTT-AAA 1340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53478703980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5