BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54700.1
Length=1646
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485875 jgi|Araly1|485875|fgenesh2_kg.5__1867__AT3G54700.1 2483 0.0
Ahg482913 jgi|Araly1|482913|fgenesh2_kg.4__1973__AT2G38940.1 1256 0.0
Ahg482224 jgi|Araly1|482224|fgenesh2_kg.4__1284__AT2G32830.1 610 1e-173
> Ahg485875 jgi|Araly1|485875|fgenesh2_kg.5__1867__AT3G54700.1
Length=1608
Score = 2483 bits (1344), Expect = 0.0
Identities = 1528/1617 (94%), Gaps = 12/1617 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGGAGATCAACTAAACGTGCTAAACGCACTCGACGTCGCCAAAACGCAATGGTAC 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1 ATGGCAGGAGATCAACTAAACGTGCTAAACGCACTCGACGTCGCCAAAACACAGTGGTAC 60
Query 61 CATTTCACGGCGATTATAATCGCCGGAATGGGATTCTTCACCGACGCTTACGACCTTTTT 120
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CATTTCACTGCGATTATCATCGCCGGAATGGGATTCTTCACCGACGCTTACGACCTTTTT 120
Query 121 TGTATCTCACTCGTCACAAAGCTTCTTGGCCGTATTTACTATCACGTGGACGGCT-CAGA 179
|||||||| |||||||| |||||||||||||| |||||||| ||||||||||| | | ||
Sbjct 121 TGTATCTCCCTCGTCACTAAGCTTCTTGGCCGCATTTACTACCACGTGGACGG-TGCGGA 179
Query 180 GAAGCCAGGAACGCTGCCACCAAACGTCTCAGCCGCTGTTAATGGAGTCGCCTTCTGCGG 239
|||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 180 GAAGCCAGGAACGCTGCCTCCAAACGTCTCGGCCGCTGTTAATGGCGTCGCCTTCTGCGG 239
Query 240 TACACTCGCAGGCCAGCTCTTCTTTGGCTGGCTCGGTGACAAGCTTGGGAGGAAAAAAGT 299
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 TACACTCGCCGGCCAGCTCTTCTTTGGCTGGCTCGGCGACAAGCTTGGGAGGAAAAAAGT 299
Query 300 TTACGGTATGACCCTCATGGTCATGGTTCTTTGTTCCATCGCTTCGGGTCTATCCTTTGG 359
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 300 TTACGGTATGACCCTCATGGTCATGGTCCTTTGTTCCATCGCCTCGGGTCTATCCTTTGG 359
Query 360 GAGTAACCCAAAAACAGTGATGACTACACTATGTTTCTTCCGGTTCTGGCTTGGTTTCGG 419
|||| |||| ||||| ||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 360 GAGTGACCCGAAAACGGTGATGACTACGCTCTGTTTCTTCCGGTTCTGGCTTGGTTTTGG 419
Query 420 CATTGGTGGTGATTATCCGTTATCCGCCACGATTATGTCTGAATACGCTAATAAAAAGAC 479
||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 420 CATAGGAGGTGATTATCCGTTATCTGCCACGATTATGTCTGAATACGCCAATAAAAAGAC 479
Query 480 CCGTGGTGCGTTTATAGCCGCCGTTTTTGCTATGCAAGGGTTTGGAATCTTGACCGGGGG 539
||| |||||||||||||| || ||||||||||||||||||||||||||||||| ||||||
Sbjct 480 CCGCGGTGCGTTTATAGCAGCGGTTTTTGCTATGCAAGGGTTTGGAATCTTGA-CGGGGG 538
Query 540 G-ATTTTTGCCATCATCGTGTCTGCCGCTTTCGAGGCTAAATTTCCAGCTCCAACCTATC 598
| |||||||||||||||||| ||||||||||||||||||| ||||| ||||| | ||||
Sbjct 539 GTATTTTTGCCATCATCGTGGCTGCCGCTTTCGAGGCTAAGTTTCCGGCTCCTATCTAT- 597
Query 599 AAA-TAGATGCCTTGGCATCCACGGTTCCTCAGGCGGATTATGTGTGGCGGATCATACTG 657
||| | ||||||||||||||||| ||||| || |||||||| |||||||||||||| ||
Sbjct 598 AAAGTTGATGCCTTGGCATCCACAGTTCCCCAAGCGGATTACGTGTGGCGGATCATTCTC 657
Query 658 ATGGTGGGTGCTTTGCCTGCAGCGATGACGTATTACTCAAGGTCCAAGATGCCTGAGACT 717
|||||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||
Sbjct 658 ATGGTGGGTGCTTTGCCTGCCGCAATGACGTATTACTCGAGGTCGAAGATGCCTGAGACC 717
Query 718 GCCCGGTACACGGCTCTTGTGGCCAAGGACGCGAAACTAGCGGCTTCAAACATGTCTAAG 777
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 718 GCCCGGTACACGGCTCTTGTGGCCAAGGATGCGAAACTAGCGGCTTCAAACATGTCTAAG 777
Query 778 GTTTTGCAAGTGGAGATCGAAGCAGAGCAGCAGGGAACTGAAGATAAGTCCAATTCCTTT 837
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 778 GTTTTGCAAGTGGAGATCGAAGCAGAGCAGCAGAGAAGTGAAGATAAGTCCAATTCCTTT 837
Query 838 GGCTTGTTTTCCAAGGAATTCATGAAACGCCATGGCCTTCATTTGCTAGGAACTACAAGC 897
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 838 GGCTTGTTTTCCAAGGAATTCATGAAACGTCATGGCCTTCATTTGCTCGGAACCACAAGC 897
Query 898 ACATGGTTCCTACTCGACATCGCCTTCTACAGTCAGAACCTATTCCAGAAAGATATTTTC 957
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 898 ACATGGTTCCTACTCGACATCGCCTTCTACAGCCAGAACCTTTTCCAGAAAGATATTTTC 957
Query 958 AGCGCAATCGGATGGATCCCTCCGGCTCAGACAATGAACGCAATTCAAGAGGTTTTCAAG 1017
||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct 958 AGCGCGATCGGATGGATTCCTCCGGCTCAGACCATGAACGCGATTCAAGAGGTTTTCAAG 1017
Query 1018 ATTGCACGTGCACAAACCCTAATCGCCTTGTGTAGCACGGTACCTGGTTACTGGTTCACA 1077
||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1018 ATTGCACGTGCGCAAACCCTAATCGCCTTGTGCAGCACGGTACCCGGTTACTGGTTCACA 1077
Query 1078 GTGGCCTTTATTGACGTCATTGGTAGATTTGCGATACAGATGATGGGTTTCTTCTTTATG 1137
|||||||| || |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1078 GTGGCCTTCATCGACGTCATAGGTAGATTTGCGATACAGATGATGGGTTTCTTCTTCATG 1137
Query 1138 ACCGTCTTTATGTTCGCTCTCGCCATTCCTTACGACCATTGGACTCACAAGGAGAACAGA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ACCGTCTTTATGTTCGCTCTCGCCATTCCTTACGACCATTGGACTCACAAGGAGAACAGA 1197
Query 1198 ATCGGATTCGTTGCTATGTACTCTCTAACATTCTTCTTCGCCAACTTTGGACCTAATGCA 1257
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1198 ATCGGATTCGTGGCTATGTACTCTCTAACATTCTTCTTCGCCAACTTTGGACCCAATGCT 1257
Query 1258 ACAACTTTCGTTGTGCCCGCTGAGATCTTCCCGGCTAGGTTTAGATCAACCTGCCATGGA 1317
|| || ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1258 ACTACCTTCGTTGTGCCGGCTGAGATTTTCCCGGCTAGGTTTAGATCAACCTGTCATGGA 1317
Query 1318 ATTTCCGCGGCTTCTGGAAAATTAGGAGCAATGGTTGGTGCGTTTGGGTTCTTGTACTTA 1377
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1318 ATTTCCGCGGCTTCTGGAAAGTTGGGAGCAATGGTTGGTGCGTTTGGGTTCTTGTACTTA 1377
Query 1378 GCACAAAGTCCTGACAAGACCAAGACAGAGCATGGATATCCTCCAGGTATTGGAGTCAAG 1437
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1378 GCACAAAGTCCTGACAAGACCAAGACAGAGCATGGATATCCTCCAGGCATTGGAGTCAAG 1437
Query 1438 AACTCCCTCATTGTTTTGGGTGTGGTTAATCTTTTGGGGATGGTTTTTACACTGTTGGTT 1497
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 AACTCGCTCATTGTTTTGGGTGTGGTTAATCTTTTGGGGATGGTTTTTACACTGTTGGTT 1497
Query 1498 CCTGAATCTAAAGGCAAGTCTCTCGAGGAAATGTCCGGTGAGAACGAACAAAATGATGAA 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 CCTGAATCTAAAGGCAAGTCTCTCGAGGAAATGTCCGGTGAGAACGAACAAAATGATGAA 1557
Query 1558 AGCAGCAGCAGCAGCAACAACAACAGTAACAACGCAGTGTCAACTGCATAGAGAATT 1614
|||||||||| | |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1558 AGCAGCAGCA--A-CAACAACA---GTAACAACGCAGTGTCAACTGCATAGAGAATT 1608
> Ahg482913 jgi|Araly1|482913|fgenesh2_kg.4__1973__AT2G38940.1
Length=1808
Score = 1256 bits (680), Expect = 0.0
Identities = 1294/1588 (81%), Gaps = 52/1588 (3%)
Strand=Plus/Plus
Query 10 GATCAACTA-AACGTGCTAAACGCACTCGACGTCGCCAAAACGCAATGGTACCATTTCAC 68
|||||| || || ||| | || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct 138 GATCAATTACAA-GTGTTGAATGCACTTGACGTGGCCAAGACGCAATGGTACCATTTCAC 196
Query 69 GGCGATTATAATCGCCGGAATGGGATTCTTCACCGACGCTTACGACCTTTTTTGTATCTC 128
|||||| || ||||||||||||||||||||||| ||||||||||| || ||||| |||||
Sbjct 197 GGCGATCATTATCGCCGGAATGGGATTCTTCACTGACGCTTACGATCTCTTTTGCATCTC 256
Query 129 ACTCGTCACAAAGCTTCTTGGCCGTATTTACTATCACGTGGACGGCTCAGAGAAGCCAGG 188
||||| || ||||| || ||||||||||| || |||||||||||| |||| ||||| ||
Sbjct 257 TCTCGTTACGAAGCTCCTCGGCCGTATTTATTACCACGTGGACGGCGCAGAAAAGCCTGG 316
Query 189 AACGCTGCCACCAAACGTCTCAGCCGCTGTTAATGGAGTCGCCTTCTGCGGTACACTCGC 248
|| || || || || ||| |||| || || ||||| || || ||||| || || |||||
Sbjct 317 GACTCTCCCTCCCAATGTCGCAGCTGCCGTCAATGGCGTTGCTTTCTGTGGGACCCTCGC 376
Query 249 AGGCCAGCTCTTCTTTGGCTGGCTCGGTGACAAGCTTGGGAGGAAAAAAGTTTACGGTAT 308
|| |||||||| ||||| ||||| ||||||||||| |||||||| || ||||| |||||
Sbjct 377 CGGTCAGCTCTTTTTTGGGTGGCTTGGTGACAAGCTCGGGAGGAAGAAGGTTTATGGTAT 436
Query 309 GACCCTCATGGTCATGGTTCTTTGTTCCA-TCGCTTCGGGTCTATCCTTTGGGAGTA--A 365
||| | ||||||||||| ||||||| || | || || ||||| | |||| ||| | |
Sbjct 437 GACGTTGATGGTCATGGTCCTTTGTT-CAGTAGCCTCTGGTCTCT-CTTTCGGA-CACGA 493
Query 366 CCCAAAAACAGTGATGACTACACTATGTTTCTTCCGGTTCTGGCTTGG-TTTCGGCATTG 424
|||||| | || ||| | || || ||||| || ||||| |||||||| ||| ||||| |
Sbjct 494 GCCAAAAGCTGTAATGGCCACGCTCTGTTTTTTTCGGTTTTGGCTTGGATTT-GGCATCG 552
Query 425 GTGGTGATTATCCGTTATCCGCCACGATTATGTCTGAATACGCTAATAA-AAAGACCCGT 483
| || || || || ||||| || ||||| ||||||||||| || || || ||| || ||
Sbjct 553 GCGGGGACTACCCTTTATCTGCAACGATCATGTCTGAATATGCCAACAAGAAA-ACTCGC 611
Query 484 GGTGCGTTTATAGCCGCCGTTTTTGCTATGCAAGGGTTTGGAATCTTGACCGGGGGGATT 543
|| || ||| | | || ||||| || |||||||||||||||||| || | || || |||
Sbjct 612 GGCGCCTTTGTCTCTGCGGTTTTCGCGATGCAAGGGTTTGGAATCATGGCTGGTGGTATT 671
Query 544 TTTGCCATCATCGTGT-CTGCCGCTTTCGAGGCTAAATTTCCAGCTCCAACCTAT-CAAA 601
|| || || || | | || | ||||| || ||||| || ||||| || ||||| | |
Sbjct 672 TTCGCTATTATAATTTCCT-CTGCTTTTGAAGCTAAGTTCCCAGCCCCGGCCTATGCGGA 730
Query 602 TAGATGCCTTGGCATCCACGGTTCCTCAGGCGGATTAT-GTGTGGCGGATCATACTGATG 660
| |||||||||| ||||||||||||||| || |||| | || |||||||| || ||||||
Sbjct 731 T-GATGCCTTGGGATCCACGGTTCCTCAAGCTGATT-TGGTATGGCGGATAATCCTGATG 788
Query 661 GTGGGTGCTTTGCCTGCAGCGATGACGTATTACTCAAGGTCCAAGATGCCTGAGACTGCC 720
|| |||||| | || || || ||||| |||||||| || || |||||||| ||||| ||
Sbjct 789 GTTGGTGCTATCCCAGCGGCAATGACATATTACTCGAGATCAAAGATGCCAGAGACCGCA 848
Query 721 CGGTACACGGCTCTT-GTGGCCAAGGACGCGAAA-CTAGCGGCTTCAAACATGTCTAAGG 778
| ||||| ||| || || || || || || ||| | |||||||||| ||||||||||||
Sbjct 849 AGATACACAGCT-TTGGTTGCTAAAGATGC-AAAGCAAGCGGCTTCAGACATGTCTAAGG 906
Query 779 TTTTGCAAGTGGAGATCGAAG-CAGAGCAGC----A--GG--GA-A-CT-GAA-GATAAG 825
|||||||| ||||||| | || |||| || | | || || | || || || |||
Sbjct 907 TTTTGCAAATGGAGATAG-AGCCAGAACAACAAAAAGTGGATGAGATCTCAAAGGAGAAG 965
Query 826 TCCAATTCCTTTGGCTTGTTTTCCAAGGAATTCATGAAACGCCATGGCCTTCATTTGCTA 885
||||| ||||| |||||| || ||||||||||||| |||||||| ||||||||||||
Sbjct 966 TCCAAGGCCTTTTCCTTGTTCTCAAAGGAATTCATGAGTCGCCATGGGCTTCATTTGCTA 1025
Query 886 GGAACTACAAGC-ACATGGTTCCTACTCGACATCGCCTTCTACAGTCAGAACCTATTCCA 944
|| ||||| | | ||||||||||| ||||||||||| ||||||||||| ||||| || ||
Sbjct 1026 GGCACTAC-ATCGACATGGTTCCTTCTCGACATCGCTTTCTACAGTCAAAACCTTTTTCA 1084
Query 945 GAAAGATATTTTCAGCGCAATCGGATGGATCCCTCCGGCTCAGA-CAATGAACGCAATTC 1003
|||||||||||||||||||||||| ||||| ||||| || | | | |||||||||||||
Sbjct 1085 GAAAGATATTTTCAGCGCAATCGGGTGGATTCCTCCCGCAAAAAGC-ATGAACGCAATTC 1143
Query 1004 AAGAGGTTTTCAAGATTGCACGTGCACAAACCCTAATCGCCTTGTGTAGCACGGTACCTG 1063
|||||||||||||||| ||||| ||||| || || |||||||||||||||||||||||||
Sbjct 1144 AAGAGGTTTTCAAGATCGCACGAGCACAGACGCTCATCGCCTTGTGTAGCACGGTACCTG 1203
Query 1064 GTTACTGGTTCACAGTGGCCTTTATTGACGTCATTGGTAGATTTGCGATACAGATGATGG 1123
|||||||||||||||| || || |||||||||||||| ||||| ||||| || |||||||
Sbjct 1204 GTTACTGGTTCACAGTTGCGTTCATTGACGTCATTGGAAGATTCGCGATTCAAATGATGG 1263
Query 1124 GTTTCTTCTTT-ATGACCGTCTTTATGTTCGCTCTCGCCATTCCTTACGACCATTGGACT 1182
| ||||| ||| ||||| ||||||||||| |||||||| ||||||||| |||| ||||||
Sbjct 1264 GCTTCTT-TTTCATGACGGTCTTTATGTTTGCTCTCGCTATTCCTTACAACCACTGGACT 1322
Query 1183 CACAAGGAGAACAGAATCGGATTCGTTG-CTATGTACTC-TCTAACATTCTTCTTCGCCA 1240
||||| |||||| |||||||||| ||| | |||||||| | |||||||||| |||||||
Sbjct 1323 CACAAAGAGAACCGAATCGGATTTGTTATC-ATGTACTCGT-TAACATTCTTTTTCGCCA 1380
Query 1241 ACTTTGGACCTAATGCAACAACTTTCGTTGTGCCCGCTGAGATCTTCCCGGCTAGGTTTA 1300
|||| ||||| ||||| ||||| ||||||||||| || ||||||||||| || ||||| |
Sbjct 1381 ACTTCGGACCCAATGCTACAACCTTCGTTGTGCCGGCCGAGATCTTCCCAGCCAGGTTCA 1440
Query 1301 GATCAACCTGCCATGGAATTTCCGCGGCTTCTGGAAAATTAGGAGCAATGGTTGGTGCGT 1360
||||||||||||| || || || || || || || |||||||||||||||||||||||||
Sbjct 1441 GATCAACCTGCCACGGTATCTCTGCAGCATCAGGCAAATTAGGAGCAATGGTTGGTGCGT 1500
Query 1361 TTGGGTTCTTGTACTTAGCACAAAGTCCTGACAAGACCAAGACAGA-GCATGGATATCCT 1419
| || ||||||||||| || || || || ||||||| |||||| || ||| ||||| |||
Sbjct 1501 TCGGATTCTTGTACTTGGCTCAGAGCCCAGACAAGAACAAGACGGACGCA-GGATACCCT 1559
Query 1420 CCAGGTATTGGAGTCAAGAACTCCCTCATTGTTTTGGGTGTGGTTAATCTT-TTGGGGAT 1478
||||| |||||||||| |||||| || ||||| |||||||||||||| ||| || || ||
Sbjct 1560 CCAGGGATTGGAGTCAGGAACTCGCTTATTGTGTTGGGTGTGGTTAA-CTTCTTAGGTAT 1618
Query 1479 GGTTTTTACACTGTTGGTTCCTGAATCTAAAGGCAAGTCTCTCGAGGAAATGTCCGGTGA 1538
| || || | ||||| |||||||||||||| ||||| || |||||||||||||||||
Sbjct 1619 TCTCTTCACTTTCTTGGTGCCTGAATCTAAAGGGAAGTCGCTAGAGGAAATGTCCGGTGA 1678
Query 1539 GAACGAACAAAATGATGAA-AGCAGCAG 1565
|| ||| | ||||| ||| |||| |||
Sbjct 1679 AAATGAAGACAATGA-GAATAGCATCAG 1705
> Ahg482224 jgi|Araly1|482224|fgenesh2_kg.4__1284__AT2G32830.1
Length=1716
Score = 610 bits (330), Expect = 1e-173
Identities = 1177/1569 (75%), Gaps = 126/1569 (8%)
Strand=Plus/Plus
Query 22 GTGCTAAACGCACTCGACGTC-GCCAAAACGCA-ATGGTACCATTTCACGGCGATTATAA 79
||| ||||||| | |||| | ||||||||||| || |||| ||||||| |||||| |||
Sbjct 55 GTGTTAAACGCTTTGGACG-CGGCCAAAACGCAGAT-GTACTATTTCACAGCGATTGTAA 112
Query 80 TCGCCGGAATGGGATTCTTCACCGACGCTTACGACCTTTTTTGTATCTCACTCGTCACAA 139
|||| || ||||| || ||||| || |||||||| ||||| | ||||| |||||||| |
Sbjct 113 TCGCGGGTATGGGTTTTTTCACTGATGCTTACGATCTTTTCAGCATCTCTCTCGTCACCA 172
Query 140 AGCTTCTTGGCCGTATTTACTATCACGTGGACGGCT-CAGAGAAGCCAGGAACGCTGCCA 198
|||| || ||||| || ||||| ||||| || |||| || ||||||| |||||||| ||
Sbjct 173 AGCTCCTCGGCCGCATATACTACCACGTTGATGGCTCCA-AGAAGCCTGGAACGCTCCCC 231
Query 199 CCAAACGTCT-CAGCCGCTGTTAATGGAGTCGCCTTCTGCGGTACACTCGCAGGCCAGCT 257
||||| || | | |||||||||||||| || || |||||||| || ||||| ||||||||
Sbjct 232 CCAAATGT-TGCTGCCGCTGTTAATGGTGTGGCTTTCTGCGGGACCCTCGCTGGCCAGCT 290
Query 258 CTTCTTTGGCTGGCTCGGTGACAAGCTTGGGAGGAAAAAAGTTTACGGTATGACCCTCAT 317
|||||| || ||||||||||||||||| || | || |||||||||||||| ||| | ||
Sbjct 291 CTTCTTCGGTTGGCTCGGTGACAAGCTCGGCCGCAAGAAAGTTTACGGTATTACCTTGAT 350
Query 318 GGTCATGGTTCTTTGTTCCA-TCGCTTCGGGTCTATCCTTTGGGAGTAACCCA-AAAAC- 374
||||||||| || |||| || ||| || ||||||| | || | || || || |||
Sbjct 351 GGTCATGGTACTATGTT-CACTCGGGTCTGGTCTAT-CATT-CG-GTCACTCAGCTAACG 406
Query 375 -AGTGATGACTACACTATGTTTCTTCCGGTTCTGGCTTGGTTTCGGCATTGGTGGTGATT 433
||| ||| | ||||| |||||||||||||||||||||||||||||||| || || || |
Sbjct 407 GAGTAATGGCCACACTTTGTTTCTTCCGGTTCTGGCTTGGTTTCGGCATAGGCGGCGACT 466
Query 434 ATCCGT-TATCCGCCACGATTATGTCTGAATACGCTAATAAAAAGACCCGTGGTGCGTTT 492
| || | | |||||||| || ||||| |||||||| || || ||||| ||||| |||||
Sbjct 467 ACCC-TCTCTCCGCCACTATCATGTCAGAATACGCCAACAAGAAGACACGTGGCGCGTTC 525
Query 493 ATAGCCGCCGTTTTTGCTATGCAAGGGTTTGGAATCTT-GACCGGGGGGATTTT-TGC-C 549
||||| ||||| |||||||||||||| || |||||||| | |||| || || | | | |
Sbjct 526 ATAGCAGCCGTCTTTGCTATGCAAGGCTTCGGAATCTTAG-CCGGAGGAATCGTGT-CTC 583
Query 550 ATCATCGTGTCT-GCCGCTTTCGAGGC-TAAATTTCCA-GCTCCAACCTATCAAA-TAGA 605
||||||| || | || ||||| | | |||| | || || ||||| | || | ||
Sbjct 584 -TCATCGTCTCGAGT-GCATTCGAC-CATGC-TTTCGACGCACCCACCTA-CGAAGTTGA 638
Query 606 TGCC--TTGGCATCCACGGTTCCTCAGGCGGATTATGTGTGGCGGATCATACTGATGGTG 663
| || |||| ||||| ||||||||||||||||| ||||||||||| | || ||| |
Sbjct 639 T-CCGGTTGGG-TCCACTGTTCCTCAGGCGGATTACGTGTGGCGGATTGTGCTCATGTTT 696
Query 664 GGTGCT-TTGCCTGCAGCGA-TGACGTATTACTCAAGG-TCCAAGATGCCTGAGACTGCC 720
|| ||| || || || | | | || ||||| | || | |||||||| || |||||
Sbjct 697 GGAGCTATT-CCGGC-GTTACTTACTTATTATTGGCGGATG-AAGATGCCGGAAACTGCT 753
Query 721 CGGTACACGGCTCTTGTGGCCAAGGACG-CGAAACTAGCGGCTTCAAACATGTCTAAGGT 779
||||| || |||||||| ||| ||| | |||| ||| || || | |||||||||||
Sbjct 754 CGGTATACCGCTCTTGTTGCCC-GGAATACCAAACAAGCCGCCTCCGATATGTCTAAGGT 812
Query 780 T-TTGCAAGTGGAG--A-T--C-GAAGCAGA-GCAGCAGGGAACTGA---AG----AT-A 823
|| |||||||| | | | |||| ||| ||| || || | | | || |
Sbjct 813 GCTT-CAAGTGGATCTAATTGCAGAAGAAGAAGCA-CAACCAAATCAGTCATCTTCATCA 870
Query 824 AGTCC-AATTCCT--TT-GGCTTGTTTTCCA-AGGAATTCA-T-GAAACGCCATGGCCTT 876
| || ||||||| || ||||| || |||| || ||||| | | || || |||||
Sbjct 871 AACCCTAATTCCTCCTTCGGCTTATTCTCCAGAG-AATTCGCTCGC--CGTCACGGCCTC 927
Query 877 CAT-TTGCTAGGAACTACAAGCACATGGTTCCTACTCGACATCGCCT-TCTACAGTCAG- 933
|| || || ||||| || | ||| |||||||| ||||||||||||| | ||||| |||
Sbjct 928 CACCTT-CTCGGAACAACCACCACGTGGTTCCTCCTCGACATCGCCTAT-TACAG-CAGC 984
Query 934 AACCTATTCCAGAAAGATATTTTCAGCGCAATCGGATGGAT-CCCTCCGGCTCAGACAAT 992
||||| ||||| ||||| || | || ||||||||||||||| ||| ||| | | |||||
Sbjct 985 AACCTCTTCCAAAAAGACATCTACACCGCAATCGGATGGATTCCCGCCGCCGAA-ACAAT 1043
Query 993 GAACGCAATTCAAGAGGTTTTCAA-GAT-TGCACGTGCACAAACCCTAATCGC-CT-TGT 1048
||||||||| || || || |||| | | | || || |||||||||||||| || ||
Sbjct 1044 GAACGCAATCCACGAAGTCTTCACCG-TCTCCAAA-GCTCAAACCCTAATCGCTCTCTGC 1101
Query 1049 GTAGCACGGTACCTGGTTACTGGTTCACAGTGGCCTTTATTGACGTCATT-GGTAGATT- 1106
| |||| || ||||||||||||||||| || || || || || | | | ||| ||||
Sbjct 1102 G--GCACCGTCCCTGGTTACTGGTTCACCGTCGCATTCATCGATAT-ACTCGGTCGATTC 1158
Query 1107 TGCGATACAGAT-GATGGG-TTTCTTCTTTATGACCG-TCTTTATGTTCGCTCTCGCCAT 1163
| | || || || |||||| ||| | ||| |||| | |||||||||||||| | || ||
Sbjct 1159 TTC-ATCCA-ATTGATGGGATTTAT-CTTCATGAT-GATCTTTATGTTCGCTTTAGCGAT 1214
Query 1164 TCCTTACGACCATTGGACTCACA-AGGAGAA-CAGAATCGGATTCGTTGCT-ATGTACTC 1220
|||||| || ||||||| || | || |||| | |||| || || ||| | ||||| ||
Sbjct 1215 TCCTTATGATCATTGGAGACATAGAG-AGAATC-GAATTGGTTTT-TTGATTATGTATTC 1271
Query 1221 -TCTAAC-AT-TCTTCTTCGCCAACTTTGGACCTAATGCAACAAC-TTTCGTTGTGCCCG 1276
| | || || | || ||||| || |||||||| ||||| || || ||| ||||| || |
Sbjct 1272 GT-TGACGATGT-TT-TTCGCGAATTTTGGACCCAATGCGACGACGTTT-GTTGTTCCTG 1327
Query 1277 CTGAGATCTTCCCGGCTAGGTTTAGATCAACCTGCCATGGAATTTCCGCGGCTTCTGGAA 1336
||||||| || ||||| ||||| ||||| || || ||||| || || ||||||||||| |
Sbjct 1328 CTGAGATATTTCCGGCGAGGTTGAGATCGACTTGTCATGGGATATCGGCGGCTTCTGGCA 1387
Query 1337 AATTAGGAGCAATGGTTGGTGCGTTTGGGTT-CTTGTACTTAGCACAAAGTCCTGACAAG 1395
| || || || ||||| || |||||||| ||| ||| || || ||| | || |
Sbjct 1388 AGGCGGGTGCGATTGTTGGAGCTTTTGGGTTTCTT-TACGCGGCGCAGAGTTCGGATTCG 1446
Query 1396 -ACCAAGACAGA-GCATGGATATCCTCCAGGTATTGGAGTCAAGAACTCCCTCATTGTT- 1452
| ||||| || || ||| |||||||| || ||||| || | ||| || | ||| |
Sbjct 1447 GAG-AAGACTGATGC-TGGTTATCCTCCTGGGATTGGTGTTAGGAATTCGTTG-TTGATG 1503
Query 1453 -TTGGGTG-TGGTTAATCT-TTTGGGGATGGTTTTTACACTGTTGGTTCCTGAATCTAAA 1509
|||| || || ||||| | |||||| || |||||||| ||||| ||||| || || |||
Sbjct 1504 CTTGG-TGGTG-TTAATTTCTTTGGG-ATTGTTTTTACTCTGTTAGTTCCGGAGTCGAAA 1560
Query 1510 GGCAAGTCT 1518
|| ||||||
Sbjct 1561 GGGAAGTCT 1569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61706196900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5