BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G54710.1 Length=1673 Score E Sequences producing significant alignments: (Bits) Value Ahg485876 jgi|Araly1|485876|fgenesh2_kg.5__1868__AT3G54710.1 2213 0.0 > Ahg485876 jgi|Araly1|485876|fgenesh2_kg.5__1868__AT3G54710.1 Length=1605 Score = 2213 bits (1198), Expect = 0.0 Identities = 1485/1617 (92%), Gaps = 45/1617 (3%) Strand=Plus/Plus Query 18 TCACTTCCCTAATCTCTCTTTTC-AGCAATGAGCTCGTCGTCTAAAATTGATTCAGAGAA 76 |||||||||||||||||| |||| | |||||||||||||||||||||| || |||||||| Sbjct 1 TCACTTCCCTAATCTCTC-TTTCTA-CAATGAGCTCGTCGTCTAAAATCGAATCAGAGAA 58 Query 77 GCCAGTTATGGTTTCCGAGTCACTATTTTCTACCAAGACTCCTATCAAAACCGTTAAAAG 136 |||||||||||| || |||||||| |||||||| |||||||||| ||||||||||||||| Sbjct 59 GCCAGTTATGGTGTCGGAGTCACTGTTTTCTACTAAGACTCCTAACAAAACCGTTAAAAG 118 Query 137 GCAGATCTTTTCTTCGTCCCCAAAACCTGAATCTGTTATAAAATTGCCCGAAAGGTTCGA 196 |||||||||||||||||||||||||||||||| |||| ||||||| || ||||||||||| Sbjct 119 GCAGATCTTTTCTTCGTCCCCAAAACCTGAATTTGTTGTAAAATTACCTGAAAGGTTCGA 178 Query 197 GATTTTGGAGGAATTTTTCAATGGTTTGGATACTGCAATTAGGCTGCTTAAATTAAAGGG 256 ||||||||||| |||||||||||| |||||||||||||||||| | |||||||||||||| Sbjct 179 GATTTTGGAGGTATTTTTCAATGGGTTGGATACTGCAATTAGGTTACTTAAATTAAAGGG 238 Query 257 TTCGTCAACGACATACGCTAATATATGTCCCAAGATCGAGTATCTTACTAATCGGATCTT 316 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 TTCGCCAACGACATACGCTAATATATGTCCCAAGATCGAGTATCTTACTAATCGGATCTT 298 Query 317 CTCGTATGATCATTTGGCTCAGATGAAGCATATTTATCCGGAAGCTATTGAACTAAAGAG 376 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 299 CTCGTATGATCATTTGGCTCAGATGAAGCATATTTATCCGGAAGCCATTGAACTAAAGAG 358 Query 377 AGTTTTGAAGTTTGTTGAAGACACTTGTTGTATGAAACCTAGGCTTCATATTAAATTAAA 436 ||||||||||| ||||||||||||||||||||||||||| || |||||||||| ||||| Sbjct 359 AGTTTTGAAGTATGTTGAAGACACTTGTTGTATGAAACCCAGTCTTCATATTAGCTTAAA 418 Query 437 TACCGATGCAATTGTAGTTGAGGATACCATTTGTGGAACTAAATACATGGAACTTAGAAA 496 ||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| || Sbjct 419 CACCGATGCAATTGTACTTGACGATACAATTTGTGGAACTAAATACATGGAACTTAGGAA 478 Query 497 GGTGTTTC-ACTCAAAGCTTGTAGATTTTCGCAAAGCTCATCCTAAGGACGAAATTCCGA 555 ||| |||| |||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 479 GGT-TTTCCACTCAAAGCTTGTAGATTTTTACAAAGCTCATCCTAAGGACGAAGTTCCGA 537 Query 556 AAGAACTGCTTCCTGAACCATTCAATTCTCCTCAAAGGGATAGTTATTCAGGTATAGTAA 615 ||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||| Sbjct 538 AAGAACTGCTTCCTGAACCGTTCAATTCCCCAAAAAGGGATAGTTATTCAGGTATAGTAA 597 Query 616 GCGTAGGCTTAGGAGAACCTAAACTTGAAGTTGGAGGGTTTGATGTTCATATGGAGGAGA 675 | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 598 GTGTAGGCTTAGGAGAACCTAAACTTGAAGTTGGAAGGTTTGATGTTCATATGGAGGAGA 657 Query 676 TAGAGCAAGAAGAACAAGATGTTAACAAAGTCATT-CCTGATTCTACTTTGTCACACATA 734 ||||||||||||||||||||| |||||||| || | || ||||||||||||||||||||| Sbjct 658 TAGAGCAAGAAGAACAAGATGCTAACAAAG-CAATGCCAGATTCTACTTTGTCACACATA 716 Query 735 GAATCAAGAATAGTTGAAACCCCAGTCAAAGATTTATCCACTCCCTCCAAAGACTTGTCC 794 ||||| ||||||||||||| ||||||||| |||| ||| ||||||||||||||||| ||| Sbjct 717 GAATCCAGAATAGTTGAAATCCCAGTCAATGATTCATCTACTCCCTCCAAAGACTTATCC 776 Query 795 ACGCCAATCCGGCTCATGAGTGCTACACCGACGTTGCAGCTATCTAAAAGATGTATTGAG 854 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 ACACCAATCCGTCTCATGAGTGCTACACCGACGTTGCAGCTATCTAAAAGATGTATTGAG 836 Query 855 TTGACTCCAGAGGGTGGTGATGATAACTCTCTTAGATCAACAAATAGTCTAGCAAGGGGT 914 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 837 TTGACTCCAGAGGGTGGTGATGATAACTCTGTTAGATCAACAAATAGTCTGGCAAGGGGT 896 Query 915 CCATCTCGCAGTCTGAATTTTGATACTTTTGAGGAAGATGCAATTGAGAAAGATGATATT 974 ||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| ||| Sbjct 897 CCATCTCGCTGTCTGAATTTTGATACTCTTGAGGAAGATGCAATTGTGAAAGATGACATT 956 Query 975 GGTAACGAATCTGATGATAAAGGAATCAACTATGAAGAAGATGGCCTTCTCCAGTCAGTA 1034 ||||||||||||| |||| | || | || ||||||||||| ||||||||| Sbjct 957 GGTAACGAATCTGCTGAT---G-AA--------G--GA-GATGGCCTTCTTCAGTCAGTA 1001 Query 1035 AAAGGTCCATCTCGCAGTTTGAATTTTGACACTCTTGAGGAAGAAACAATTGTGAAAGAT 1094 || ||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1002 AAGGGTTCATCTCGCAGTTTGAATTTTGAAACTCTTGAGGAAGATACAATTGTGAAAGAT 1061 Query 1095 GACATTAGTAACGAATCTGGTGATGAAAAAAGCAACTATGAAGGTGATAATGCTTCTGAT 1154 ||||| ||||||||||||||||||||||||| ||||||||||| ||||||| || Sbjct 1062 GACATCAGTAACGAATCTGGTGATGAAAAAATCAACTATGAAGCAGATAATG------AT 1115 Query 1155 GATGATAGCCTCCTTCAGTCAATGATAGAGAGACCAAAGACTGAACCCGAGAAGCACAAT 1214 ||| | |||| |||||||||| || |||||||||||||||||||||||||| Sbjct 1116 GAT-A--GCCTTCTTCAGTCAA-GA--------CCAAAGACTGAACCCGAGAAGCACAAA 1163 Query 1215 TTGCCACAGCTTGTTAATTTGATTCATAGAGTGTTTCACTCAACAAATCGGACAGTCATC 1274 ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1164 TTGCCACAGCTTGTTGATTTGATTCATAGAGTTTTTCACTCAACAAATCGGACAGTCATC 1223 Query 1275 ACGAAGGAGGAGCTTCTTTACAAGATTATTGCAAACCAAATCAATATAACTGATAGAAGG 1334 |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 1224 ACGAAGGAGGAGCTTCTTCACAAGATTATTGCAAACCAAATCAATATAACCGATAGAAGG 1283 Query 1335 GAAGTGGAAGAACAATTAAGTCTGATGTTGCAATTGGTCCCGGATTGGATATCTGAAACA 1394 |||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 1284 GAAGTGGAGGAACAGTTAAGTCTGATGTTGCAATTAGTCCCGGATTGGATCTCTGAAACA 1343 Query 1395 AAAGCATCTTCTGGGGATCTTCTTGTTCGCATCAATAAAATGTCGACTGCCGAAACAGTA 1454 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 1344 AAAGCATCTTCTGGGGATCTTCTTGTTAGCATCAATAAAATGTCGGCTGCCGAAACAGTA 1403 Query 1455 CGTGCAAGACTTGAAGAAGCAACTTCACATGACATTTCACTTATCTACTGAAAAACCATA 1514 ||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 1404 CGTGCAAAACTTGAAGAAGCAACTTCACAGGACATTTCACTTGTCTACTGAAAAACCATA 1463 Query 1515 AAACTGA--AACttttttttGTGTTTTCATCCTCTTCACCAATTCAGTTATCATTATTCT 1572 ||| | | || ||| || ||||||| |||||||||||| |||||| ||||||||||||| Sbjct 1464 AAATTCAGGAA-TTTATTGTGTGTTT-CATCCTCTTCACAAATTCAATTATCATTATTCT 1521 Query 1573 TCACAAATATCTTCTTTCTAAGCTGGTCCAACCTATAAACTTGTAACATTCGTTTTA 1629 ||||||||| |||||||||||||||||||||| ||||||||||||| |||| ||||| Sbjct 1522 TCACAAATAGCTTCTTTCTAAGCTGGTCCAACTTATAAACTTGTAATATTC-TTTTA 1577 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62734633515 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5