BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54710.1
Length=1673
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485876 jgi|Araly1|485876|fgenesh2_kg.5__1868__AT3G54710.1 2213 0.0
> Ahg485876 jgi|Araly1|485876|fgenesh2_kg.5__1868__AT3G54710.1
Length=1605
Score = 2213 bits (1198), Expect = 0.0
Identities = 1485/1617 (92%), Gaps = 45/1617 (3%)
Strand=Plus/Plus
Query 18 TCACTTCCCTAATCTCTCTTTTC-AGCAATGAGCTCGTCGTCTAAAATTGATTCAGAGAA 76
|||||||||||||||||| |||| | |||||||||||||||||||||| || ||||||||
Sbjct 1 TCACTTCCCTAATCTCTC-TTTCTA-CAATGAGCTCGTCGTCTAAAATCGAATCAGAGAA 58
Query 77 GCCAGTTATGGTTTCCGAGTCACTATTTTCTACCAAGACTCCTATCAAAACCGTTAAAAG 136
|||||||||||| || |||||||| |||||||| |||||||||| |||||||||||||||
Sbjct 59 GCCAGTTATGGTGTCGGAGTCACTGTTTTCTACTAAGACTCCTAACAAAACCGTTAAAAG 118
Query 137 GCAGATCTTTTCTTCGTCCCCAAAACCTGAATCTGTTATAAAATTGCCCGAAAGGTTCGA 196
|||||||||||||||||||||||||||||||| |||| ||||||| || |||||||||||
Sbjct 119 GCAGATCTTTTCTTCGTCCCCAAAACCTGAATTTGTTGTAAAATTACCTGAAAGGTTCGA 178
Query 197 GATTTTGGAGGAATTTTTCAATGGTTTGGATACTGCAATTAGGCTGCTTAAATTAAAGGG 256
||||||||||| |||||||||||| |||||||||||||||||| | ||||||||||||||
Sbjct 179 GATTTTGGAGGTATTTTTCAATGGGTTGGATACTGCAATTAGGTTACTTAAATTAAAGGG 238
Query 257 TTCGTCAACGACATACGCTAATATATGTCCCAAGATCGAGTATCTTACTAATCGGATCTT 316
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTCGCCAACGACATACGCTAATATATGTCCCAAGATCGAGTATCTTACTAATCGGATCTT 298
Query 317 CTCGTATGATCATTTGGCTCAGATGAAGCATATTTATCCGGAAGCTATTGAACTAAAGAG 376
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 299 CTCGTATGATCATTTGGCTCAGATGAAGCATATTTATCCGGAAGCCATTGAACTAAAGAG 358
Query 377 AGTTTTGAAGTTTGTTGAAGACACTTGTTGTATGAAACCTAGGCTTCATATTAAATTAAA 436
||||||||||| ||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct 359 AGTTTTGAAGTATGTTGAAGACACTTGTTGTATGAAACCCAGTCTTCATATTAGCTTAAA 418
Query 437 TACCGATGCAATTGTAGTTGAGGATACCATTTGTGGAACTAAATACATGGAACTTAGAAA 496
||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 419 CACCGATGCAATTGTACTTGACGATACAATTTGTGGAACTAAATACATGGAACTTAGGAA 478
Query 497 GGTGTTTC-ACTCAAAGCTTGTAGATTTTCGCAAAGCTCATCCTAAGGACGAAATTCCGA 555
||| |||| |||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 479 GGT-TTTCCACTCAAAGCTTGTAGATTTTTACAAAGCTCATCCTAAGGACGAAGTTCCGA 537
Query 556 AAGAACTGCTTCCTGAACCATTCAATTCTCCTCAAAGGGATAGTTATTCAGGTATAGTAA 615
||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 538 AAGAACTGCTTCCTGAACCGTTCAATTCCCCAAAAAGGGATAGTTATTCAGGTATAGTAA 597
Query 616 GCGTAGGCTTAGGAGAACCTAAACTTGAAGTTGGAGGGTTTGATGTTCATATGGAGGAGA 675
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 598 GTGTAGGCTTAGGAGAACCTAAACTTGAAGTTGGAAGGTTTGATGTTCATATGGAGGAGA 657
Query 676 TAGAGCAAGAAGAACAAGATGTTAACAAAGTCATT-CCTGATTCTACTTTGTCACACATA 734
||||||||||||||||||||| |||||||| || | || |||||||||||||||||||||
Sbjct 658 TAGAGCAAGAAGAACAAGATGCTAACAAAG-CAATGCCAGATTCTACTTTGTCACACATA 716
Query 735 GAATCAAGAATAGTTGAAACCCCAGTCAAAGATTTATCCACTCCCTCCAAAGACTTGTCC 794
||||| ||||||||||||| ||||||||| |||| ||| ||||||||||||||||| |||
Sbjct 717 GAATCCAGAATAGTTGAAATCCCAGTCAATGATTCATCTACTCCCTCCAAAGACTTATCC 776
Query 795 ACGCCAATCCGGCTCATGAGTGCTACACCGACGTTGCAGCTATCTAAAAGATGTATTGAG 854
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ACACCAATCCGTCTCATGAGTGCTACACCGACGTTGCAGCTATCTAAAAGATGTATTGAG 836
Query 855 TTGACTCCAGAGGGTGGTGATGATAACTCTCTTAGATCAACAAATAGTCTAGCAAGGGGT 914
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 837 TTGACTCCAGAGGGTGGTGATGATAACTCTGTTAGATCAACAAATAGTCTGGCAAGGGGT 896
Query 915 CCATCTCGCAGTCTGAATTTTGATACTTTTGAGGAAGATGCAATTGAGAAAGATGATATT 974
||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| |||
Sbjct 897 CCATCTCGCTGTCTGAATTTTGATACTCTTGAGGAAGATGCAATTGTGAAAGATGACATT 956
Query 975 GGTAACGAATCTGATGATAAAGGAATCAACTATGAAGAAGATGGCCTTCTCCAGTCAGTA 1034
||||||||||||| |||| | || | || ||||||||||| |||||||||
Sbjct 957 GGTAACGAATCTGCTGAT---G-AA--------G--GA-GATGGCCTTCTTCAGTCAGTA 1001
Query 1035 AAAGGTCCATCTCGCAGTTTGAATTTTGACACTCTTGAGGAAGAAACAATTGTGAAAGAT 1094
|| ||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1002 AAGGGTTCATCTCGCAGTTTGAATTTTGAAACTCTTGAGGAAGATACAATTGTGAAAGAT 1061
Query 1095 GACATTAGTAACGAATCTGGTGATGAAAAAAGCAACTATGAAGGTGATAATGCTTCTGAT 1154
||||| ||||||||||||||||||||||||| ||||||||||| ||||||| ||
Sbjct 1062 GACATCAGTAACGAATCTGGTGATGAAAAAATCAACTATGAAGCAGATAATG------AT 1115
Query 1155 GATGATAGCCTCCTTCAGTCAATGATAGAGAGACCAAAGACTGAACCCGAGAAGCACAAT 1214
||| | |||| |||||||||| || ||||||||||||||||||||||||||
Sbjct 1116 GAT-A--GCCTTCTTCAGTCAA-GA--------CCAAAGACTGAACCCGAGAAGCACAAA 1163
Query 1215 TTGCCACAGCTTGTTAATTTGATTCATAGAGTGTTTCACTCAACAAATCGGACAGTCATC 1274
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1164 TTGCCACAGCTTGTTGATTTGATTCATAGAGTTTTTCACTCAACAAATCGGACAGTCATC 1223
Query 1275 ACGAAGGAGGAGCTTCTTTACAAGATTATTGCAAACCAAATCAATATAACTGATAGAAGG 1334
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1224 ACGAAGGAGGAGCTTCTTCACAAGATTATTGCAAACCAAATCAATATAACCGATAGAAGG 1283
Query 1335 GAAGTGGAAGAACAATTAAGTCTGATGTTGCAATTGGTCCCGGATTGGATATCTGAAACA 1394
|||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1284 GAAGTGGAGGAACAGTTAAGTCTGATGTTGCAATTAGTCCCGGATTGGATCTCTGAAACA 1343
Query 1395 AAAGCATCTTCTGGGGATCTTCTTGTTCGCATCAATAAAATGTCGACTGCCGAAACAGTA 1454
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1344 AAAGCATCTTCTGGGGATCTTCTTGTTAGCATCAATAAAATGTCGGCTGCCGAAACAGTA 1403
Query 1455 CGTGCAAGACTTGAAGAAGCAACTTCACATGACATTTCACTTATCTACTGAAAAACCATA 1514
||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1404 CGTGCAAAACTTGAAGAAGCAACTTCACAGGACATTTCACTTGTCTACTGAAAAACCATA 1463
Query 1515 AAACTGA--AACttttttttGTGTTTTCATCCTCTTCACCAATTCAGTTATCATTATTCT 1572
||| | | || ||| || ||||||| |||||||||||| |||||| |||||||||||||
Sbjct 1464 AAATTCAGGAA-TTTATTGTGTGTTT-CATCCTCTTCACAAATTCAATTATCATTATTCT 1521
Query 1573 TCACAAATATCTTCTTTCTAAGCTGGTCCAACCTATAAACTTGTAACATTCGTTTTA 1629
||||||||| |||||||||||||||||||||| ||||||||||||| |||| |||||
Sbjct 1522 TCACAAATAGCTTCTTTCTAAGCTGGTCCAACTTATAAACTTGTAATATTC-TTTTA 1577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62734633515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5