BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54740.2
Length=1894
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324005 jgi|Araly1|324005|fgenesh1_pm.C_scaffold_5001549 2078 0.0
> Ahg324005 jgi|Araly1|324005|fgenesh1_pm.C_scaffold_5001549
Length=1311
Score = 2078 bits (1125), Expect = 0.0
Identities = 1255/1318 (95%), Gaps = 8/1318 (1%)
Strand=Plus/Plus
Query 443 ATGGATTCAGAATTGAGTTTTTCTTCGAGGGATGTGGTGAATTGCTGTGAATATGGTTGT 502
||||||||||||||||| ||| |||| |||||||| |||||||||||||||| |||||||
Sbjct 1 ATGGATTCAGAATTGAGATTTCCTTCAAGGGATGTTGTGAATTGCTGTGAATTTGGTTGT 60
Query 503 GATTATTCTCTTGGGGCATGTTCTTCAGATCCTTTGGCTAGGACGGTGAAAAGAAAGTTC 562
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 GATTATTCACTTGGGGCATGTTCTTCAGATCCTTGGGCTAGGACGGTGAAAAGAAAGTTC 120
Query 563 AACGAATTCAAAGAAGGGAACAACATGATGTTGTTACGAGGTTCTTCTGATTCATCTTCT 622
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 121 AACGAATTCAAAGAAGGG---AACATGATGTTGTTACGAGGTTCTTCTGATTCA---TCT 174
Query 623 TCAAACGCTAAGATACTAGTTGAGAATGAATGTGCAGCTTTACTTGAGGCTCTTTCTAGC 682
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 175 TCAAACGCTAAGATACTAGTTGAGAATGAATGCGCAGCTTTACTTGAGGCTCTTTCTAGC 234
Query 683 CAAAGGGAAACAGTTAAAGATCTTCATTTAGAGCTTGAAGAGGAGAGAAACGCTGCTGCA 742
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 235 CAAAGGAAAACAGTTAAAGATCTTCATTTAGAGCTTGAAGAGGAGAGAAATGCTGCTGCA 294
Query 743 TCTGCAGCTAATGAGACTATGTCGATGATACTGAGGTTGCAGAGAGAAAAGGCTGAGATT 802
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TCTGCAGCGAATGAGACTATGTCGATGATACTGAGGTTGCAGAGAGAAAAGGCTGAGATT 354
Query 803 CAGATGGAAGCTCGGCAATTCAAAATGTTTGCTCAAGAGAAAATGACACATGACCAAGAA 862
|||||||||||||||||||||||| |||||||| | ||||||||||| ||||||||||||
Sbjct 355 CAGATGGAAGCTCGGCAATTCAAAGTGTTTGCTGAGGAGAAAATGACGCATGACCAAGAA 414
Query 863 AAGCTCTCGGTTTTGGAGAATTTGTTGTATGAGAAAGAACAAGCTATCGAGGCATTGACT 922
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 415 AAGCTCTCGGTTTTGGAGAATTTGTTGTATGAGAAAGAACAAGCTATTGAGGCCTTGACT 474
Query 923 TATGAGGTCGAAGCATACAAGCATAGATTGTTGAGCTATGGGGTATCTGAAGCTGAGATA 982
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 475 TATGAGGTCGAAGCATACAAGCATAGATTGTTGAGCTATGGAGTCTCTGAAGCTGAGATA 534
Query 983 CATGATCAGATACTTGGTTTTGGCAGAGACTCTAGCACGGTTGGCTTTGATGTTTACCCT 1042
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 535 CATGATCAGATACTTGGTTTTGGCAGAGACTCGAGCACGGTTGGTTTTGATGTTTACCCG 594
Query 1043 TGCGAGTATACTTCTTTGGAATGTAGTGTGGATGAGAACCCGAGTGGACCAGATGGTAAC 1102
|||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||
Sbjct 595 TGCGAGTATACTTCTTTGCAATGTAGTGTGGATGAGAACCCGTGTGAACCAGATGGTAA- 653
Query 1103 T-TTGAGATTGAAGAAAAGGTGATGGTTGGTCAGTCTCCAAGATGGCCATATTATGATCC 1161
| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 654 TGTTGATATTGAAGAAAAGGTGATAGTTGGTCAGTCTCCAAGATGGCCATATTATGATCC 713
Query 1162 CAATTCGCCTTTAGGAACTGCAAAAGATATTAAGGGGGCATCTTTCGCAGACTCTCCTAT 1221
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 714 CAATTCGCCTTTAGGAACTGCAAAAGATATAAAGGGGACATCTTTCGCAGACTCTCCTAT 773
Query 1222 GTCTAGTAGTAGCGACCGAGTTTATACTATCGACTCCATTCACGTGGGAGTTTCTGAAGT 1281
|||||||||||||||| ||||||||||||||||||| || || |||||||||||||||||
Sbjct 774 GTCTAGTAGTAGCGACAGAGTTTATACTATCGACTCAATCCATGTGGGAGTTTCTGAAGT 833
Query 1282 TAAGATTGACGATGAGCCTAATAAGATGAGTAAGGGAAAGTTAAATGGTGATCACTGGAA 1341
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 834 TAAGATTGACGACGAGCCTAATAAGATGAGTAAGGGAAAGTTAAATGGTGATCTCTGGAA 893
Query 1342 CTCTCCAAGATACCAAGAACCGTTCACGACTCAGCAGGGAGTTAACGAGCCAGATATAGA 1401
|||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 894 CTCTCCGAGATACCAAGAACCATTCACGACTCAGCAAGGAGTTAACGAGCCAGATATAGA 953
Query 1402 GAAGCTTTACACAAGGCTTCAAGCACTTGAGGCAGACAGGGAATCACTGAGACAGATCAT 1461
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 954 GAAGCTTTACACAAGGCTTCAAGCACTTGAAGCAGACAGGGAATCATTGAGACAGATCAT 1013
Query 1462 TGTGTCGATGCGGACAGACAAAGCTCAGTTGGTGTTGCTGAAAGAAATCGCACAGCATTT 1521
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1014 TGTGTCGATGCGGACAGATAAAGCTCAGTTGGTGTTACTGAAAGAAATCGCACAGCATTT 1073
Query 1522 AACAAAGGAAACCGGCGCAACAAGCAGGCGAAACCCTGTTAGCAAAATGCCATCTCTTAA 1581
|||||||||||||||| |||||||||||||| |||| |||||||||||| ||||| ||||
Sbjct 1074 AACAAAGGAAACCGGCACAACAAGCAGGCGACACCCGGTTAGCAAAATGTCATCTTTTAA 1133
Query 1582 AGTATTCTCTGTAGTAACGGTCTTCAAGTGGATTGTGTCTTTCGTTTCGTGGAAAAGGAA 1641
|| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1134 AGGATTCTCTGTAGTAACGTTCTTCAAGTGGATTGTGTCTTTCGTTTCGTGGAAGAGGAA 1193
Query 1642 AGCCAGACAAAACAAGTATGTTTATGAGTTGTCAGCAAATAATATGGGGATGCTTATGAT 1701
|||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1194 AGCCAGGCAAAGCAAGTATGTTTATGAATTGTCAGCAAATAATATGGGGATGCTTATGAT 1253
Query 1702 TCTAGGCGAGGGATCTGGAACTAGGAGATGGAGATGTTTAACGAGTTCACATGTCTAG 1759
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1254 TCTAGGCGAGGGATCTGGAGCTAGGAGATGGAGATGTTTAACAAGTTCACATGTCTAG 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71152577660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5