BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54750.3
Length=2175
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485881 jgi|Araly1|485881|fgenesh2_kg.5__1873__AT3G54750.2 2867 0.0
> Ahg485881 jgi|Araly1|485881|fgenesh2_kg.5__1873__AT3G54750.2
Length=2144
Score = 2867 bits (1552), Expect = 0.0
Identities = 1728/1814 (95%), Gaps = 8/1814 (0%)
Strand=Plus/Plus
Query 219 GCTAAGAGGAAGACGCCTTCTGAACTGAGAGGAGAACAATTGAAACGGACTGCTTTTGTG 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 GCTAAGAGGAAGACGCCTTCTGAACTGAGAGGAGAACAATTGAAACGGACTGCTTTTGTG 393
Query 279 GACCAAGCTAAAGAAGCTTTTGATGCATTGCGTCCTTGCAAAAGTAGTGCTGAGAGAGAA 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 394 GACCAAGCTAAAGAAGCTTTTGATGCATTGCGTCCTTGCAAAAGTAGTGCTGAGAAAGAT 453
Query 339 AATGGGTTCAAGAAATCA-GAGCTTTCGAAGAATCCAAAATACATTGAGATGCGTATGGA 397
|||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 454 AATGGGCTCAAGAAA-CAAGAGCTTTCGAAGAATCCAAAATACATAGAGATGCGTATGGA 512
Query 398 TGAACTGTATCCTGTCAAAAAGGCTAGGCCTTGGATGCTCTCTGGCAAAGAAAACTCTAA 457
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 513 TGAACTGTATCCTGTCAAAAAGGCTAGGCCTTGGATGCTCTCTGCCAAAGAAAACTCTAA 572
Query 458 GGAAAATGGTGCGAAGCAATCCAGCAGCCTAATCAATGTTTCTTTACTCTCGAATCTTGC 517
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 573 GGAAAATGGTGCGAAGCAATCCAGCAGCCTAATCAATGTTTCTTTACTCTCAAATGTTGC 632
Query 518 TGCCACCAAAAGACAACTTATTCGTGAGGAGAATAATGCTTCTACTGAAGTTCCTGATGA 577
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 633 TGCCAACAAAAGACAACTTATTCGTGAGGAGAATAATGCTTCTACTGAAGTTTCTGATGA 692
Query 578 CACTAAGGCTGAAGCTCGTCAAACAAATGAGAGATGTAGCCAGAGCATATTTCGCAGTGT 637
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 CATTAAGGCTGAAGCTCGTCAAACAAATGAGAGATGTAGCCAGAGCATATTTCGCAGTGT 752
Query 638 CACACAACTTTCAACCAGGGGTGAAGAATTATCCTGCTTGCCAGATATTGATATGAACAA 697
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 CACAGAACTTTCAACCAGGGGTGAAGAATTATCCTGCTTGCCAGATATTGATATGAACAA 812
Query 698 AGCATTGAAAGGACTTGCTACTTGTGAACCTTTGCTGGTTCATCCTGGCGACATAACTGG 757
|||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| ||
Sbjct 813 AGCATTGAAAGGACTTGCCACTTGTGAACCATTGCTGGTTCATCCTGCCGACATAAGTGT 872
Query 758 GGAAGATGATACT---GCTTCATTAAGTGGAAGTTTCATGTCCGAGTTTCAAGTTTC-TG 813
| ||||||||||| |||||||||||||||| ||||||||| ||||| ||| |||| ||
Sbjct 873 GAAAGATGATACTTCTGCTTCATTAAGTGGAAATTTCATGTCTGAGTTCCAA-TTTCCTG 931
Query 814 GGCAGAAGATTCCTCTGGACCTTTCCTTGAAGACTTATGCTCGACTTGTTTCCTCTTCTC 873
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 GGCAAAAGATTCCTCTGGACCTTTCCTTGAAGACTTATGCTCGACTTGTTTCCTCTTCTC 991
Query 874 CATTAAGTTGGTTACATAGATCAATCATGGGTAGCACATACAATGGTATGCCACAGCTGA 933
||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 992 CATTAAGTTGGTTACATAGGTCAATCATGGGTAGTACCTACAATGGTATGCCACAGCTGA 1051
Query 934 AGTCGCTGTCGTGTAATGTGGTAAATCAAGATAACAGTAGTGGTTCTGGAGCATCTGTGG 993
|||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1052 AGTCTCTGTCGTGTAATGTGGTAAATCAAGATAACAGTAGTGGTTCTGGATCAGCTGTGG 1111
Query 994 TTTCCCAGGTGTTAAATTCCATGTCACTACACTCGTGGGTTTATCCTCAGTCCACCTTGC 1053
||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 1112 TTTCCCAAGTGTTAAATTCTATGTCGCTACACTCGTGGGTTTATCCTCAGTCTACCTTGC 1171
Query 1054 CACCTTTTGTCATATCGGCAATGGTGGCATCTGTATCAGACAGAGGTGAAGTTGATTTCC 1113
|||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| |
Sbjct 1172 CACCTTTTGTCATATCGGCATTGGTAGCATCTGGATCAGACAGAGGTGAAGTTGATTTTC 1231
Query 1114 TACAAAAGCGAAAATTGGCATGGGAGGATGCATTTCGAAGTTTATATTTTATGTTTCGAA 1173
||||||| ||||||||||||||||||||||| ||||||||| ||||||| || ||||| |
Sbjct 1232 TACAAAATCGAAAATTGGCATGGGAGGATGCTTTTCGAAGTCTATATTTCATATTTCGGA 1291
Query 1174 AGAATCTCTGCAAAGTATTTTATGTCTGTACTTCTCAGTTTGTGGCAATGTTCACTGGAA 1233
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 AGAATCTCTGCAAAATATTTTATGTCTGTACTTCTCAGTTTGTGGCAATGTTCACTGGAA 1351
Query 1234 GCTGTGAGTCAGGGGGTGCCAAACGCTCATGCAATGGCTATATCACCCAGTCAACTAGAA 1293
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 GCTGTGAGTCAGGAGGTGTCAAACGCTCATGCAATGGCTATATCACCCAGTCAACTAGAA 1411
Query 1294 GATTGAGAGCCATGCTTAAAAATCTTGACATCTGCTACTCTATGCCTCTTTGCAAGACTA 1353
||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||
Sbjct 1412 GATTGAGAGCCATGCTTAACGATCTTGACATCAGCTACTCTATGCCTCTTTGCAAAACTA 1471
Query 1354 AAATGGATCAGACCACTGTTGAAGATCTTGCTGAGCTCTCAGAGTTAGAGAATCATAACA 1413
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1472 AAATGGATCAGACCACTGTTGAAGATCTTGCTGAACTCTCAGAGATAGAGAATCATAACC 1531
Query 1414 TTGGCCAGATTCGTCGTTCGCGTTCTGTCTCAAACATTGATAATACTCCAGAATCTTTCT 1473
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1532 TTGGCCAGATTCGTCGTTCGCGTTCCGTCTCAAACATTGATAATACTCCAGAATCTTTCT 1591
Query 1474 TGGCCTTTGTCGGAAATGAGAGCGTACATGGATTGTATGATCTTCTGTTAAATTATAGGT 1533
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1592 TGGCTTTTGTCGGAAATGAGAGCGTACATGGATTGTATGATCTTCTCTTAAATTATAGGT 1651
Query 1534 ATTCTTTTGAATTTCTTCCTACCGCAGATGTTCCTGTATTATCTTCACCAGTGCCATTTC 1593
|||||||||||||||||||||||| || |||||||| |||| |||||||||||||||||
Sbjct 1652 CTTCTTTTGAATTTCTTCCTACCGCCGACGTTCCTGTTTTATATTCACCAGTGCCATTTC 1711
Query 1594 AGAATGCTGCACTGTCTTCTCCCGAGATCAAATGCTCTGAGATGGTAAAAACAGAACATA 1653
|||||||||||||||||||||| |||||||||||| |||||||||||| | |||||||||
Sbjct 1712 AGAATGCTGCACTGTCTTCTCCTGAGATCAAATGCACTGAGATGGTAAGACCAGAACATA 1771
Query 1654 CAAGTTGCTACATGGTTGAGATTAAAGGTGAATATATTCCGCCGTGGATTATTAGCAATA 1713
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1772 CAAGTTGCTGCATGGTTGAGATTAAAGGTGAATATCTTCCGCCGTGGATTATTAGCAATA 1831
Query 1714 TATGTGCAAATGTGGGTGCTAATGGACAAAACTTTGAAGCCAGCTTTGTGACCGAGCCAA 1773
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1832 TATGTGCAAATGTGGGTGCTAATGGACAAAACTTTGAAGCCAGCTTTGTGACTGAGCCAA 1891
Query 1774 CCTCGGTTAATTTAAACATTGGTCTACCACAAGTCCCTGAGAAGACAGACCCTGAGTCTA 1833
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1892 CCTCGGTTAATTTAAACATTGGTCTACCACAAGTCCCTGAGAAGACAGACCCTGAGTCTC 1951
Query 1834 GAGTCATAGAAGGCACAGGAGAAACAAACGACAATGCGTCGGACATTCCTGGATCAGTGA 1893
||||||||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||
Sbjct 1952 GAGTCATAGAAGGCACAGGAGAAACAAACGATAATGCGTCTGACATTCCCGGAGCAGTGA 2011
Query 1894 TCTGTCCTCAGCTTCAATCAGGCCATCTAAAGAACTTAAAGTATTGCAACAAGTCTTACA 1953
|||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct 2012 TCTGCCCTCAGCTTCAATCAGGCCATCTTAAGAGCTTGAAGTATTGCAACAAGTCTTACA 2071
Query 1954 CGGTTTCGCTGTCTCCTTCGTGATCTGTCTCTGTTAtttttttCCAAGTTTTCATCATTA 2013
|||||||||||||||| |||||||||||||||||| ||| |||||| |||||||||||||
Sbjct 2072 CGGTTTCGCTGTCTCCCTCGTGATCTGTCTCTGTT-TTTCTTTCCAGGTTTTCATCATTA 2130
Query 2014 TGTATGAAATGAAT 2027
||||||||||||||
Sbjct 2131 TGTATGAAATGAAT 2144
Score = 222 bits (120), Expect = 7e-57
Identities = 192/223 (86%), Gaps = 19/223 (9%)
Strand=Plus/Plus
Query 1 GTTTGTTTCCCCTAAATTTTACAAAATAGAGAGAATAATG-AAAAAACCCTAGCCTGCCC 59
||| |||||||||||| ||||| ||| ||||||||||||| |||||| |||||||||| |
Sbjct 80 GTTCGTTTCCCCTAAAATTTAC-AAA-AGAGAGAATAATGAAAAAAAACCTAGCCTGCTC 137
Query 60 CGCCGTGGAGGAGAATT-ACACCACGACGAGCTCGTAATCGCCGCTGGGTTTCTATGTTT 118
||||||||||| | ||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 138 CGCCGTGGAGGCG-ATTCACACCACGACGAGCTCGTAATCGTCGCTGGGTTTCTATGTTT 196
Query 119 ACATCGCTAAGAGATTAACCATCGAGCGTGATTTGGTATTGGGGTTAGGTAAATTTGGGG 178
||||||||||||||||||||||||||||| | | || | || || ||||||
Sbjct 197 ACATCGCTAAGAGATTAACCATCGAGCGT-A---G-TAAA----T--GG-AA-TTTGGG- 242
Query 179 ATCAAGCGAACAGTATCATTTGGAAATGACGAAAGTAGTTGCT 221
|||||| ||||||||||||||| ||||| |||||||||||||
Sbjct 243 ATCAAGTGAACAGTATCATTTGAAAATGGTGAAAGTAGTTGCT 285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81855936505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5