BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54770.1
Length=1004
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485883 jgi|Araly1|485883|fgenesh2_kg.5__1875__AT3G54770.1 1445 0.0
> Ahg485883 jgi|Araly1|485883|fgenesh2_kg.5__1875__AT3G54770.1
Length=987
Score = 1445 bits (782), Expect = 0.0
Identities = 940/1011 (93%), Gaps = 31/1011 (3%)
Strand=Plus/Plus
Query 1 ATAATTCAATTCGctctccttctctctctatctct-gccct-ttctttctctctcACACA 58
|||||||||||| |||| ||||||||||||||| | | || ||| ||| |||| | ||
Sbjct 1 ATAATTCAATTCACTCTTCTTCTCTCTCTATCTATATCTCTGCTCTCTCTTTCTCTCGCA 60
Query 59 CAAACACGATCCAATGACGACGAGCAACAACGTGAACGGATGTTTCGGAGACACGAAGCT 118
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TACACACGATCCAATGACAACGAGCAACAACGTGAACGGATGTTTCGGAGACACGAAGCT 120
Query 119 GACCAAAGTGTTCGTAGGAGGATTGGCTTGGGATACTCACAAAGAAGCAATGTATGATCA 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GACCAAAGTGTTCGTAGGAGGATTGGCTTGGGATACTCACAAAGAAGCAATGTATGATCA 180
Query 179 TTTCATCAAGTATGGGGACATCTTGGAGGCAGTCATTATCTCCGACAAACTCACTCGCCG 238
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 TTTCATCAAGTATGGTGACATCTTGGAGGCAGTCATCATCTCCGACAAACTCACTCGCCG 240
Query 239 TTCCAAAGGATATGGCTTTGTGACTTTCAAAGATGCGAAAGCTGCCACGAGAGCTTGCGA 298
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 TTCCAAAGGATACGGCTTTGTGACTTTCAAAGATGCGGAAGCTGCCACGAGAGCTTGCGA 300
Query 299 AGACTCTACTCCGATCATCAATGGCCGCCGTGCCAACTGCAATCTCGCCTCCCTCGGTGG 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGACTCTACTCCGATCATCAATGGCCGCCGTGCCAACTGCAATCTCGCCTCCCTCGGTGG 360
Query 359 CCGTCTTCGTAAATCCCCTACCATGACCTCTCCTCAACAAGGACCAAAAAATGGGAACAG 418
||| |||||||||||||| |||||||||||||||||||||||| |||||||||| |||||
Sbjct 361 CCGCCTTCGTAAATCCCCCACCATGACCTCTCCTCAACAAGGAACAAAAAATGGTAACAG 420
Query 419 GGCCACGCCACCACATGTTGGAAATCATTCTCAGTGGTACTACCCGTCCGGATTCACAAA 478
||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 421 GGCCACGTCACCACATGTTGGAAATCATTCTCAATGGTACTACCCGTCCGGTTTCACAAA 480
Query 479 CCAGCAACATCAAC---AACAA-AATCATCAAGCCGTTCCTTTCTATGGGTACCCTTCCG 534
||||||| | |||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 481 CCAGCAATACCAACTTCAACAACAA-CATCAAGCCGTTCCTTTCTATGGGTACCCTTCCG 539
Query 535 CCTACGTTGCCCCGAACATGACCTTCAATCAAAAAGTTGGATATGTCGGAGGAACCTATA 594
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 540 CCTACGTTGCCCCGAACATGAACTTCAATCAAAAAGTTGGATATGCCGGAGGAACCTATA 599
Query 595 TGAACGGATACTATGCACAAATGCAACCACAACCGCAATCGCAGCCACAACCGCAATATT 654
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 600 TGAACGGATACTATGCACAAATGCAACCACAACCGCAATCGCAGCCGCAACCGCAATATT 659
Query 655 ACCACCATCACATGTATGGTGGAGGACGAGTTATGGTTGGGGCAGCAAGTCCAATGGTGC 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ACCACCATCACATGTATGGTGGAGGACGAGTTATGGTTGGGGCAGCAAGTCCAATGGTGC 719
Query 715 CTTTCTACACTGTCTATCCTTATCATCAATCTCAAGCC-ATCGGGTTTCCACAACCTTCA 773
|||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct 720 CTTTCTACACTGTCTATCCTTATCATCAATCTCAAGCCTA-CGGGTTTCCACCACCTTCC 778
Query 774 TTTTCGAAACCTCTTTCTTTTTCCACTCCTCCTATATCAGGCACAGTTGGAGGAGAGAGC 833
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 779 TTTTCGAAACCCCTTTCTTTTTCCACTCCTCCCATATCAGGCACAGTTGGAGGAGAGAGC 838
Query 834 ATACAGAAGAAGGCCATACATTGATAGGCTAGAAGCTGTTAATCAAACGATTGACTCAGC 893
||||||||||||||||||||||||||||||| |||||||| |||||| ||| | |
Sbjct 839 ATACAGAAGAAGGCCATACATTGATAGGCTACAAGCTGTTGATCAAA--ATT--C--A-- 890
Query 894 CCAAAATTATTCATTTTATCCATCTCACTAAGCTTTAtttttttCTAGAGACTTGTATTT 953
|| ||| | ||||||||||||||||||||||| | |||||| |||||||
Sbjct 891 ------TT-TTC-T-----CCATCTCACTAAGCTTTATTTTTACC-AGAGACATGTATTT 936
Query 954 GTAATAATTTAATTTCGTTACATTTAATAATTTATTCATTGAAGCTAAGCT 1004
||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 937 TTAATAATTTAATTTCGTTACATTTAATCATTTATTCATTGAAGCTAAGCT 987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37322335743
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5