BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G54780.1 Length=2181 Score E Sequences producing significant alignments: (Bits) Value Ahg324008 jgi|Araly1|324008|fgenesh1_pm.C_scaffold_5001552 3127 0.0 > Ahg324008 jgi|Araly1|324008|fgenesh1_pm.C_scaffold_5001552 Length=2019 Score = 3127 bits (1693), Expect = 0.0 Identities = 1928/2038 (95%), Gaps = 29/2038 (1%) Strand=Plus/Plus Query 32 ATGGTGAGCAAATGGAAGAAGATGAAGCTAGCTTTGAGTTTGAATCTCTGCAAC-TATCT 90 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1 ATGGTGAGCAAATGGAAGAAGATGAAGCTAGCTTTGAGTTTGAATCTCTGC-ACTTATCT 59 Query 91 CCCCA-GAACCCTCGAGGAGGAACCACCATCATTGGCTTTGAATTCCGCTGAGACATTAT 149 |||| |||||||||| |||||||||||||||| ||||| ||||||||||||| ||||| Sbjct 60 -CCCACGAACCCTCGAAGAGGAACCACCATCATCAGCTTTAAATTCCGCTGAGAGATTAT 118 Query 150 CAGATGCTGCTTTGCTCTCTCCTCTTAACTGGCCCATGACTCCAACACCTTCTTCTTACC 209 | |||||| ||||||| |||||||||||||||||||||||||||||| | ||||||||| Sbjct 119 CGGATGCTTCTTTGCTTTCTCCTCTTAACTGGCCCATGACTCCAACA-C--CTTCTTACC 175 Query 210 GT-CGAAGGTTGTCCAGAAGTAGCAGCAAATCGTC-AA--AGACTTGCTCTATATGCTTG 265 || | ||||||||||||||||| |||||||||||| || |||||||||||||||||||| Sbjct 176 GTAC-AAGGTTGTCCAGAAGTATCAGCAAATCGTCAAAGCAGACTTGCTCTATATGCTTG 234 Query 266 AAC-AAGATGAAAGAAGGTTGTGGACATGCAATTTTCACAGCGGAGTGCTCGCACATGTT 324 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 235 -ACTAAGATGAAAGAAGGTTGTGGACATGCAATTTTCACAGCTGAGTGCTCGCACATGTT 293 Query 325 TCATTTTCATTGCATTGCTTCGAATGTGAAACATGGCAACCAAGTTTGCCCAGTGTGCCG 384 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 294 TCATTTTCATTGCATTGCTTCGAATGTGAAACACGGCAACCAAGTTTGCCCAGTGTGCCG 353 Query 385 AGCTAAATGGAAGGAAATCCCTATACAGAAGCCGAGTTTGGATCTTCCTTATTACCCCTT 444 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 354 AGCTCAATGGAAGGAAATCCCTATACAGAAGCCGAGTTTGGATCTTCCTTATTATCCCTT 413 Query 445 TGACAGGTGCAATAATGATGCAGCCATTAGCCTTTTCCGCTGCTTACCTCCTTCTCAACG 504 |||| ||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 414 TGACCGGTTCAATAATGATGCAGCCATTAGGCTTATCCGCTGCTTACCTCCTTCTCAACG 473 Query 505 AGCTAT-AACCCAAGGGCATCCCGAGCCAGCTACTTTCGATGATGATGAACGGTTAGAAG 563 |||||| || |||||||||||| |||||||||| |||||||||||||||||||||||| | Sbjct 474 AGCTATGAA-CCAAGGGCATCCTGAGCCAGCTATTTTCGATGATGATGAACGGTTAGAGG 532 Query 564 AGCAGATTGTTTTTGATGGTGAAACTGAAGTC-TTGAAGAAGGAGAACCGTGATTATGTG 622 ||| ||||||||| |||||||||||| | | ||| ||||||||||| |||||| |||| Sbjct 533 CGCAAATTGTTTTTCTTGGTGAAACTGATG-CTTTGGAGAAGGAGAACTGTGATTCTGTG 591 Query 623 CGAATGATGGACATGAAAGTGTATCCAGAGGTCTCAGCTGTACCACAATCCAAGTCTTGT 682 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 592 CGAATGATGGACATGAAAATGTATCCAGAGGTCTCAGCTGTACCACAATCCAAGTCCTGT 651 Query 683 GAGAATTTTGATGTACTAGTGCATCTCAAAGCAGTTACTGGTGATCAGATTTCTCAGTAT 742 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 652 GAGAATTTTGATATATTAGTGCATCTCAAAGCAGTTACTGGTGATCAGATTTCTCAGTAT 711 Query 743 CGCCGAGCGCCAATTGATTTAGTTACAGTGCTAGACATCAGTGGTAGTATGGGAGGAACT 802 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 712 CGCCGAGCGCCAATTGATTTAGTTACAGTGCTAGACATCAGTGGTAGTATGGCAGGAACT 771 Query 803 AAGCTAGCACTTCTGAAACGAGCAATGGGTTTTGTGATTCAAAATCTTGGGTCCAGTGAT 862 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 772 AAGCTAGCACTTCTGAAACGAGCAATGGGTTTTGTGATTCAAAATCTTGGGTCCAGTGAT 831 Query 863 AGGCTCTCAGTGATTGCTTTCTCTTCAACAGCTCGACGTCTCTTCCCTTTAACCCGAATG 922 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 832 AGGCTCTCAGTGATTGCTTTCTCTTCAACAGCTCGCCGTCTCTTCCCTTTAACACGAATG 891 Query 923 TCTGATGCTGGAAGACAGCTAGCCCTTCAAGCTGTTAACTCACTGGTTGCAAATGGTGGG 982 ||||| || |||||||||| |||||||||||||||||||||| |||| |||||||||||| Sbjct 892 TCTGACGCAGGAAGACAGCAAGCCCTTCAAGCTGTTAACTCATTGGTGGCAAATGGTGGG 951 Query 983 ACCAATAT-TGTCGATGGTCTTAGAAAAGGTGCCAAGGTTATGGAAGATAGGCTAGAAAG 1041 |||||||| | |||||||||||||||||||||| ||||||||||||||||| | ||| || Sbjct 952 ACCAATATCT-TCGATGGTCTTAGAAAAGGTGCTAAGGTTATGGAAGATAGACGAGAGAG 1010 Query 1042 AAATTCTGTTGCCAGCATTATCCTTTTGTCTGACGGGCGAGATACATATACTACGAACCA 1101 ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 1011 AAATTCTGTTGCCAGCATTATCCTTTTGTCTGACGGGCGAGATACCTATACTATGAACCA 1070 Query 1102 TCCTGATCCAAGTTACAAGGTGATGCTTCCTCAGATTTCTGTTCACTCTTTTGGTTTTGG 1161 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1071 TCCTGATCCAAGTTACAAGGTGATGCTTCCTCAGATCCCTGTTCACTCTTTTGGTTTTGG 1130 Query 1162 ATCAGATCATGATGCTTCAGTGATGCACTCAGTCTCTGAAGTCTCTGGTGGAACCTTTTC 1221 |||||||||||||||||||||||||||||| || |||||| |||||||||||||||| || Sbjct 1131 ATCAGATCATGATGCTTCAGTGATGCACTCTGTTTCTGAATTCTCTGGTGGAACCTTCTC 1190 Query 1222 TTTCATTGAAAGTGAGTCTGTGATCCAGGATGCTCTTGCACAGTGCATTGGTGGACTTTT 1281 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1191 TTTCATTGAAAGTGAGTCTGTGATCCAGGATGCTCTTGCACAGTGCATTGGTGGACTTTT 1250 Query 1282 AAGCGTTGCAGTGCAGGAGCTACGAGTAGAAATTGAAGGTGTGAGCCCAAATGTTCGACT 1341 ||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||| Sbjct 1251 AAGCGTTGCAGTGCAGGAGTTACGAGTAGAAATTGAAGGTGTGTGCCCAAGTGTTCGACT 1310 Query 1342 TAGCTCGATAAAAGCTGGGAGTTACTCTAGCCTTGTAACTGGTGATGGCCACTCAGGGTT 1401 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 1311 TAGCTCGATAAAAGCTGGGAGTTACTCTAGCCTTGTAAATGGTGATGGCCACTCAGGATT 1370 Query 1402 GGTTGATCTTGGTGATCTTTATGCTGATGAAGAGAGGGATTTCTTGGTTTCTATCAACAT 1461 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 1371 GGTTGATCTTGGTGATCTTTATGCCGATGAAGAGAGGGATTTTTTGGTTTCTATCAACAT 1430 Query 1462 CCCTGTTGAGGAAGATGGACATACACCATTGCTAAAGCTGAGATGTCTCTACATTAATCC 1521 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1431 CCCTGTTGAGGAAGATGGACATACACCATTGCTAAAGCTGAGATGTCTCTACATTGATCC 1490 Query 1522 CTTGACAAAGGAGATTACAACGCTTGAAAGTCACGTGCTTCAGATTCGAAGACCAGAATA 1581 |||||||||||||||||| ||| ||||||||| ||||||||||||||| ||||||||||| Sbjct 1491 CTTGACAAAGGAGATTACGACGGTTGAAAGTCCCGTGCTTCAGATTCGTAGACCAGAATA 1550 Query 1582 TGTTGCTGAAGAAAAAGTTGTTCCCATCGAAGTGGTCAGGCAAAGAAACAGATTCCTAGC 1641 ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||| |||| Sbjct 1551 TGTTGCTGAAGAAGAAGTTGTCCCCATCGAAGTGGTCAGGCAAAGAAATAGATTCTTAGC 1610 Query 1642 TGCAGAGGCAATGGCCCAAGCAAGAACTTTAGCAGAGCATGGAGATTTAGAGGCAGCCGT 1701 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1611 TGCAGAGGCAATGGCCCAAGCAAGAACTTTAGCAGAGGATGGAGATTTAGAGGCAGCCGT 1670 Query 1702 TAAAGCCATTGAGAATTTTAGATTGGTTTTGGCAGAGACGGTTGCAGCAAAATCATGTGA 1761 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1671 TAAAGCCATTGAAAATTTTAGATTGGTTTTGGCAGAGACGGTTGCAGCAAAATCCTGTGA 1730 Query 1762 CAGGTTTTGTGTTGCTTTGGACTCGGAACTGAAGGAAATGCAAGGTAGAATGAGGAGTAG 1821 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1731 CAGGTTTTGTGTTGCTTTGGACTCGGAACTGAAGGAAATGCAAGGTAGAATGAGGAGTAG 1790 Query 1822 TCACATGTACGAGGCATCGGGAAGAGCTTATATTCTTTCTGGACTTAGCTCACACTCATG 1881 |||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1791 TCACGTCTATGAGGCATCGGGAAGAGCTTATATTCTTTCTGGACTTAGCTCACACTCATG 1850 Query 1882 GCAAAGAGCAACAGCGAGGGGAAATTCAAGGGACAGTTCGAGCTTTGTCCAGGCTTATCA 1941 |||||||||||||||||||||||||||||||||| || | |||||||||||||| Sbjct 1851 GCAAAGAGCAACAGCGAGGGGAAATTCAAGGGAC--TT-----T--GTCCAGGCTTATCA 1901 Query 1942 GACTCCATCAATGGCTGAGATGCTGCGTCGATCACAGGCCATGTTTCTAGTTAGTCCATC 2001 |||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||| Sbjct 1902 GACTCCATCAATGGCTGAGATGCTACGTCGGTCACAGGCCATGTTACTGGTTAGTCCATC 1961 Query 2002 ACATCATAGACTCATTCAGCCCTTGCTCTCTTTTGCTTCACAACCAAAGCCAAGGTAA 2059 |||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 1962 ACATCAAAGACTCATTCAGCCATTGCTGTCTTTTGCTTCACAACCAAAGCCAAGGTAA 2019 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82084477975 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5