BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54780.1
Length=2181
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324008 jgi|Araly1|324008|fgenesh1_pm.C_scaffold_5001552 3127 0.0
> Ahg324008 jgi|Araly1|324008|fgenesh1_pm.C_scaffold_5001552
Length=2019
Score = 3127 bits (1693), Expect = 0.0
Identities = 1928/2038 (95%), Gaps = 29/2038 (1%)
Strand=Plus/Plus
Query 32 ATGGTGAGCAAATGGAAGAAGATGAAGCTAGCTTTGAGTTTGAATCTCTGCAAC-TATCT 90
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1 ATGGTGAGCAAATGGAAGAAGATGAAGCTAGCTTTGAGTTTGAATCTCTGC-ACTTATCT 59
Query 91 CCCCA-GAACCCTCGAGGAGGAACCACCATCATTGGCTTTGAATTCCGCTGAGACATTAT 149
|||| |||||||||| |||||||||||||||| ||||| ||||||||||||| |||||
Sbjct 60 -CCCACGAACCCTCGAAGAGGAACCACCATCATCAGCTTTAAATTCCGCTGAGAGATTAT 118
Query 150 CAGATGCTGCTTTGCTCTCTCCTCTTAACTGGCCCATGACTCCAACACCTTCTTCTTACC 209
| |||||| ||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct 119 CGGATGCTTCTTTGCTTTCTCCTCTTAACTGGCCCATGACTCCAACA-C--CTTCTTACC 175
Query 210 GT-CGAAGGTTGTCCAGAAGTAGCAGCAAATCGTC-AA--AGACTTGCTCTATATGCTTG 265
|| | ||||||||||||||||| |||||||||||| || ||||||||||||||||||||
Sbjct 176 GTAC-AAGGTTGTCCAGAAGTATCAGCAAATCGTCAAAGCAGACTTGCTCTATATGCTTG 234
Query 266 AAC-AAGATGAAAGAAGGTTGTGGACATGCAATTTTCACAGCGGAGTGCTCGCACATGTT 324
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 235 -ACTAAGATGAAAGAAGGTTGTGGACATGCAATTTTCACAGCTGAGTGCTCGCACATGTT 293
Query 325 TCATTTTCATTGCATTGCTTCGAATGTGAAACATGGCAACCAAGTTTGCCCAGTGTGCCG 384
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 294 TCATTTTCATTGCATTGCTTCGAATGTGAAACACGGCAACCAAGTTTGCCCAGTGTGCCG 353
Query 385 AGCTAAATGGAAGGAAATCCCTATACAGAAGCCGAGTTTGGATCTTCCTTATTACCCCTT 444
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 354 AGCTCAATGGAAGGAAATCCCTATACAGAAGCCGAGTTTGGATCTTCCTTATTATCCCTT 413
Query 445 TGACAGGTGCAATAATGATGCAGCCATTAGCCTTTTCCGCTGCTTACCTCCTTCTCAACG 504
|||| ||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 414 TGACCGGTTCAATAATGATGCAGCCATTAGGCTTATCCGCTGCTTACCTCCTTCTCAACG 473
Query 505 AGCTAT-AACCCAAGGGCATCCCGAGCCAGCTACTTTCGATGATGATGAACGGTTAGAAG 563
|||||| || |||||||||||| |||||||||| |||||||||||||||||||||||| |
Sbjct 474 AGCTATGAA-CCAAGGGCATCCTGAGCCAGCTATTTTCGATGATGATGAACGGTTAGAGG 532
Query 564 AGCAGATTGTTTTTGATGGTGAAACTGAAGTC-TTGAAGAAGGAGAACCGTGATTATGTG 622
||| ||||||||| |||||||||||| | | ||| ||||||||||| |||||| ||||
Sbjct 533 CGCAAATTGTTTTTCTTGGTGAAACTGATG-CTTTGGAGAAGGAGAACTGTGATTCTGTG 591
Query 623 CGAATGATGGACATGAAAGTGTATCCAGAGGTCTCAGCTGTACCACAATCCAAGTCTTGT 682
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 592 CGAATGATGGACATGAAAATGTATCCAGAGGTCTCAGCTGTACCACAATCCAAGTCCTGT 651
Query 683 GAGAATTTTGATGTACTAGTGCATCTCAAAGCAGTTACTGGTGATCAGATTTCTCAGTAT 742
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GAGAATTTTGATATATTAGTGCATCTCAAAGCAGTTACTGGTGATCAGATTTCTCAGTAT 711
Query 743 CGCCGAGCGCCAATTGATTTAGTTACAGTGCTAGACATCAGTGGTAGTATGGGAGGAACT 802
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 712 CGCCGAGCGCCAATTGATTTAGTTACAGTGCTAGACATCAGTGGTAGTATGGCAGGAACT 771
Query 803 AAGCTAGCACTTCTGAAACGAGCAATGGGTTTTGTGATTCAAAATCTTGGGTCCAGTGAT 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 AAGCTAGCACTTCTGAAACGAGCAATGGGTTTTGTGATTCAAAATCTTGGGTCCAGTGAT 831
Query 863 AGGCTCTCAGTGATTGCTTTCTCTTCAACAGCTCGACGTCTCTTCCCTTTAACCCGAATG 922
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 832 AGGCTCTCAGTGATTGCTTTCTCTTCAACAGCTCGCCGTCTCTTCCCTTTAACACGAATG 891
Query 923 TCTGATGCTGGAAGACAGCTAGCCCTTCAAGCTGTTAACTCACTGGTTGCAAATGGTGGG 982
||||| || |||||||||| |||||||||||||||||||||| |||| ||||||||||||
Sbjct 892 TCTGACGCAGGAAGACAGCAAGCCCTTCAAGCTGTTAACTCATTGGTGGCAAATGGTGGG 951
Query 983 ACCAATAT-TGTCGATGGTCTTAGAAAAGGTGCCAAGGTTATGGAAGATAGGCTAGAAAG 1041
|||||||| | |||||||||||||||||||||| ||||||||||||||||| | ||| ||
Sbjct 952 ACCAATATCT-TCGATGGTCTTAGAAAAGGTGCTAAGGTTATGGAAGATAGACGAGAGAG 1010
Query 1042 AAATTCTGTTGCCAGCATTATCCTTTTGTCTGACGGGCGAGATACATATACTACGAACCA 1101
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1011 AAATTCTGTTGCCAGCATTATCCTTTTGTCTGACGGGCGAGATACCTATACTATGAACCA 1070
Query 1102 TCCTGATCCAAGTTACAAGGTGATGCTTCCTCAGATTTCTGTTCACTCTTTTGGTTTTGG 1161
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1071 TCCTGATCCAAGTTACAAGGTGATGCTTCCTCAGATCCCTGTTCACTCTTTTGGTTTTGG 1130
Query 1162 ATCAGATCATGATGCTTCAGTGATGCACTCAGTCTCTGAAGTCTCTGGTGGAACCTTTTC 1221
|||||||||||||||||||||||||||||| || |||||| |||||||||||||||| ||
Sbjct 1131 ATCAGATCATGATGCTTCAGTGATGCACTCTGTTTCTGAATTCTCTGGTGGAACCTTCTC 1190
Query 1222 TTTCATTGAAAGTGAGTCTGTGATCCAGGATGCTCTTGCACAGTGCATTGGTGGACTTTT 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TTTCATTGAAAGTGAGTCTGTGATCCAGGATGCTCTTGCACAGTGCATTGGTGGACTTTT 1250
Query 1282 AAGCGTTGCAGTGCAGGAGCTACGAGTAGAAATTGAAGGTGTGAGCCCAAATGTTCGACT 1341
||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||
Sbjct 1251 AAGCGTTGCAGTGCAGGAGTTACGAGTAGAAATTGAAGGTGTGTGCCCAAGTGTTCGACT 1310
Query 1342 TAGCTCGATAAAAGCTGGGAGTTACTCTAGCCTTGTAACTGGTGATGGCCACTCAGGGTT 1401
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1311 TAGCTCGATAAAAGCTGGGAGTTACTCTAGCCTTGTAAATGGTGATGGCCACTCAGGATT 1370
Query 1402 GGTTGATCTTGGTGATCTTTATGCTGATGAAGAGAGGGATTTCTTGGTTTCTATCAACAT 1461
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1371 GGTTGATCTTGGTGATCTTTATGCCGATGAAGAGAGGGATTTTTTGGTTTCTATCAACAT 1430
Query 1462 CCCTGTTGAGGAAGATGGACATACACCATTGCTAAAGCTGAGATGTCTCTACATTAATCC 1521
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1431 CCCTGTTGAGGAAGATGGACATACACCATTGCTAAAGCTGAGATGTCTCTACATTGATCC 1490
Query 1522 CTTGACAAAGGAGATTACAACGCTTGAAAGTCACGTGCTTCAGATTCGAAGACCAGAATA 1581
|||||||||||||||||| ||| ||||||||| ||||||||||||||| |||||||||||
Sbjct 1491 CTTGACAAAGGAGATTACGACGGTTGAAAGTCCCGTGCTTCAGATTCGTAGACCAGAATA 1550
Query 1582 TGTTGCTGAAGAAAAAGTTGTTCCCATCGAAGTGGTCAGGCAAAGAAACAGATTCCTAGC 1641
||||||||||||| ||||||| |||||||||||||||||||||||||| |||||| ||||
Sbjct 1551 TGTTGCTGAAGAAGAAGTTGTCCCCATCGAAGTGGTCAGGCAAAGAAATAGATTCTTAGC 1610
Query 1642 TGCAGAGGCAATGGCCCAAGCAAGAACTTTAGCAGAGCATGGAGATTTAGAGGCAGCCGT 1701
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1611 TGCAGAGGCAATGGCCCAAGCAAGAACTTTAGCAGAGGATGGAGATTTAGAGGCAGCCGT 1670
Query 1702 TAAAGCCATTGAGAATTTTAGATTGGTTTTGGCAGAGACGGTTGCAGCAAAATCATGTGA 1761
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1671 TAAAGCCATTGAAAATTTTAGATTGGTTTTGGCAGAGACGGTTGCAGCAAAATCCTGTGA 1730
Query 1762 CAGGTTTTGTGTTGCTTTGGACTCGGAACTGAAGGAAATGCAAGGTAGAATGAGGAGTAG 1821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 CAGGTTTTGTGTTGCTTTGGACTCGGAACTGAAGGAAATGCAAGGTAGAATGAGGAGTAG 1790
Query 1822 TCACATGTACGAGGCATCGGGAAGAGCTTATATTCTTTCTGGACTTAGCTCACACTCATG 1881
|||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 TCACGTCTATGAGGCATCGGGAAGAGCTTATATTCTTTCTGGACTTAGCTCACACTCATG 1850
Query 1882 GCAAAGAGCAACAGCGAGGGGAAATTCAAGGGACAGTTCGAGCTTTGTCCAGGCTTATCA 1941
|||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 1851 GCAAAGAGCAACAGCGAGGGGAAATTCAAGGGAC--TT-----T--GTCCAGGCTTATCA 1901
Query 1942 GACTCCATCAATGGCTGAGATGCTGCGTCGATCACAGGCCATGTTTCTAGTTAGTCCATC 2001
|||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||
Sbjct 1902 GACTCCATCAATGGCTGAGATGCTACGTCGGTCACAGGCCATGTTACTGGTTAGTCCATC 1961
Query 2002 ACATCATAGACTCATTCAGCCCTTGCTCTCTTTTGCTTCACAACCAAAGCCAAGGTAA 2059
|||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1962 ACATCAAAGACTCATTCAGCCATTGCTGTCTTTTGCTTCACAACCAAAGCCAAGGTAA 2019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82084477975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5