BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54800.1
Length=2692
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485890 jgi|Araly1|485890|fgenesh2_kg.5__1882__AT3G54800.1 3956 0.0
> Ahg485890 jgi|Araly1|485890|fgenesh2_kg.5__1882__AT3G54800.1
Length=2641
Score = 3956 bits (2142), Expect = 0.0
Identities = 2523/2697 (94%), Gaps = 65/2697 (2%)
Strand=Plus/Plus
Query 2 ACAAAATAATTATTTGTTTTTCTCTCTTGATTGAGAGaaaaacaaaaaaaaaaTTTGAAA 61
||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 1 ACAAAATAACTATTTGTTTTTCTCTCTTGATTGAGAGAAAAAC---------A----AAA 47
Query 62 AATAATTTTTTCTTTGTAACTGATCTTTCCATACTTTTGATTCTCTGTTTCGCTTCGGCG 121
|| ||||||||||||| | ||||||||| |||| ||||||||||||||||||||||||||
Sbjct 48 AA-AATTTTTTCTTTGCAGCTGATCTTT-CATATTTTTGATTCTCTGTTTCGCTTCGGCG 105
Query 122 GAATCAGAGAATCGTTTCAAGTTACAAATTCGCA-ACAAAAACGTGTTGTGATATCGAGT 180
|||||||||||||| ||||||||||||||||| | ||||| |||| |||||||||||| |
Sbjct 106 GAATCAGAGAATCGCTTCAAGTTACAAATTCG-AGACAAACACGTTTTGTGATATCGAAT 164
Query 181 ATT-TATTCGTTTACGGGGAAGAAACATTTCAAGTGGTATAAGCATTTCCTGATTGTTTG 239
|| ||||||||||||||||||||||||||||||||||| || |||| ||| | |
Sbjct 165 -TTATATTCGTTTACGGGGAAGAAACATTTCAAGTGGTAGAA--ATTT--TGA---ATCG 216
Query 240 AAACTTTGAATCGTTTAATAAATTTAAAAATAAGAAAAAAGGA-TTTGTAGAGAAATGGG 298
|||| || | |||||||||| ||| ||||| ||| ||||||||||||||||
Sbjct 217 ----TTTG-AT-G------AAATTTAAAACTAA-AAAAATGGATTTTGTAGAGAAATGGG 263
Query 299 AGTGTCTCAAACCGACGGAAGAATGGAAGGTTGGCTTTATACCATCCGACACAACCGATT 358
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 264 CGTGTCTCAAACCGACGGAAGAATGGAAGGTTGGCTTTATACCATCAGACATAACCGATT 323
Query 359 TGGCCTTCAATTTTCCCGTAAACGATACTTCGTTCTTC-ACGAGAACAACCTTACAAGTT 417
||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||
Sbjct 324 TGGCCTTCAATTTTCCCGTAAACGATATTTCGTTCTTCTA-GAAAACAACCTTACAAGTT 382
Query 418 TTAAATCTGTACCATCTGATCACAATGAGGAACCTGAGAGAAGAGCATCTCTAGATTGTT 477
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 383 TTAAATCTGTACCATCCGATCACAATGAGGAACCTGAGAGAAGAGCATCTTTAGATTGTT 442
Query 478 GTATTCGCGTTACCGACAATGGTAGAGAGAGTTTCCATAGAAAGATTCTTTTCATATTCA 537
||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 443 GTATTCGGGTTACCGACAATGGAAGAGAGAGTTTCCATAGGAAGATTCTTTTCATATTCA 502
Query 538 CGCTTTACAACACTTCGAACCATTTGGATCAACTAAAGTTGGGAGCAAGTAGTCCTGAAG 597
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 CTCTTTACAACACTTCGAACCATTTGGATCAACTAAAGTTGGGAGCAAGTAGTCCTGAAG 562
Query 598 AAGCTGCCAAATGGATCCGATCATTGCAGGATGCTTCACAAAAGGGGTTTCCGA-TTCCG 656
|||| ||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 563 AAGCAGCCAAATGGATCCGATCATTGCAGGATGCTTCACAAAAGGGGTTT-CAATTTCCG 621
Query 657 GATTGCGAATTTTTTGTATCTCATGCTGAGAAGGGACTTGTGAAGCTTGATGTATCAAAG 716
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 GATTGCGAA---TTTGTATCTCATGCTGAGAAGGGACTTGTGAAGCTTGATGTATCAAAG 678
Query 717 AGGAACCGTCGCAAAAACTCTGTGGACTGGACAAATTATTCATCGACAAATTACTCATCA 776
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 679 AGGAACCGTCGCAAAAACTCTGTGGACTGGACAAATTACTCATCCACAAATTACTCATCA 738
Query 777 ACATCATTGAATGTCGAAACA-AACGTAGCGCCTGATGTCATTGCACCTTCTCCATGGAA 835
||||||||||||||||||||| | || |||| |||||||||||||||||||||||||||
Sbjct 739 ACATCATTGAATGTCGAAACAGTA-GTTGCGCATGATGTCATTGCACCTTCTCCATGGAA 797
Query 836 AATCTTCGGATGCCAAAATGGTTTACGCCTTTTCAAAGAAGCTAAAGATTGGGATTCCCG 895
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 798 AATCTTTGGATGCCAAAACGGTTTACGCCTTTTCAAAGAAGCTAAAGATTGGGATTCCCG 857
Query 896 CGGAAGGCATTGGGATGATCACCCAGCAATCATGGCAGTTGGGGTCATTGATGGTACTTC 955
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 858 CGGAAGGCATTGGGATGATCACCCTGCAATAATGGCAGTTGGGGTCATTGATGGTACTTC 917
Query 956 AGAGGATATTTTCAACACGTTAATGTCTCTCGGTCCCTTACGATCAGAATGGGACTTCTG 1015
||| |||||||| || ||||||||||||||||||||| || |||||||||||||||||||
Sbjct 918 AGAAGATATTTTTAATACGTTAATGTCTCTCGGTCCCCTAAGATCAGAATGGGACTTCTG 977
Query 1016 TTTCTACAAAGGAAACGTGGTGGAGCATCTTGATGGACACACAGATATAATCCATCTTCA 1075
|||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 978 TTTCTACAAAGGTAGTGTGGTGGAGCATCTTGATGGACACACAGATATAATCAATCTTCA 1037
Query 1076 GTTATACAGTGATTGGTTGCCATGGGGCATGAATCGAAGAGACTTATTGCTGCGACGCTA 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1038 GTTATACAGTGATTGGTTGCCATGGGGCATGAATCGAAGAGACTTATTGCTGCGACGTTA 1097
Query 1136 CTGGAGAAGGGAAGATGATGGAACATATGTCATACTTTGTCACTCTGTATATCACAAGAA 1195
||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1098 CTGGAGAAGGGAAGAAGATGGAACATATGTGATACTTTGTCACTCTGTTTATCACAAGAA 1157
Query 1196 CTGCCCACCAAAGAAGGGATACGTCCGCGCTTGTGTCAAAAGTGGTGGTTACGTGGTGAC 1255
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1158 CTGCCCACCAAAGAAGGGATACGTTCGCGCTTGTGTCAAAAGTGGTGGTTATGTGGTGAC 1217
Query 1256 TCCGGCGAACAACGGGAAACAATCACTAGTAAAGCATATGGTAGCCATTGATTGGAGAAG 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 TCCGGCGAACAACGGGAAACAATCACTAGTAAAGCATATGGTAGCCATTGATTGGAGAAG 1277
Query 1316 CTGGAACTTATACATGAGACCATCTTCTGCAAGATCCATAACCATCCGTGTGGTTGAGAG 1375
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1278 CTGGAACTTATACATGAGGCCATCTTCTGCAAGATCCATAACTATCCGTGTGGTTGAGAG 1337
Query 1376 GGTTGCGGCTTTACGCGAAATGTTCAAAGCGAAACAAGGACACGGCTTCACTGAGTTTGT 1435
|||||| || |||||||||||||||||||||||||||||| | ||||||||||| || ||
Sbjct 1338 GGTTGCAGCATTACGCGAAATGTTCAAAGCGAAACAAGGAAATGGCTTCACTGACTTCGT 1397
Query 1436 TTCAGGGGAGTTTTTGGACACCAAACCCTGCTTGTCCAAGATCAACACTATGCCCCTTAA 1495
||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||
Sbjct 1398 TTCAGGGGAGTTTTTGGACACCAAACCCTGCTTATCCAAAATCAACACTAGGCCCCTTAA 1457
Query 1496 AACAGAGGCCAAAGAGGTTGATCTAGAGACTATGCATGCTGAGGAAATGGATAAACCTAC 1555
||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 1458 AACAGAGGCCAAAGAGGTTGATCTAGAGACTGTGAAGGCTGAGGAAATGGATAAACCTAC 1517
Query 1556 TTCAGCACGCAATAGTTTGATGGACTTAAATGATGCTTCTGATGAATTTTTTGACGTTCC 1615
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1518 TTCAGCACGCAATAGTTTGATGGACTTAAATGATGCTTCTGATGAGTTTTTTGACGTTCC 1577
Query 1616 TGAGCCCAACGAATCCACTGAGTTTGATAGCTTTATTGATAGCTCTCCATATTCTCAAGG 1675
|||||||||||| || || |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1578 TGAGCCCAACGAGTCTACCGAGTTTGATAGCTTTATTGATACCTCTCCATATTCTCAAGG 1637
Query 1676 ACATCAGCTCAAGATTCCAACACCAGCTGGTATTGTCAAGAAACTTCAAGATCTAGCCAT 1735
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1638 ACATCAGCTCAAGATACCAACACCAGCTGGTATTGTTAAGAAACTTCAAGATCTAGCCAT 1697
Query 1736 TAATAAGAAAGGCTATATGGATTTACAAGAGGTGGGTTTGGAGGAAAATAACACTTTCTT 1795
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1698 TAATAAGAAAGGCTATATGGATTTACAAGAAGTGGGTTTGGAGGAAAATAACACCTTCTT 1757
Query 1796 CTATGGAGCCACTCTTCAAAAAGATCCAAGTCTCACTCTGCCTTGTAGTTGGTCTACCGC 1855
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1758 CTATGGAGCTACTCTTCAAAAAGATCCAAGTCTCACTCTGCCTTGTAGTTGGTCTACCGC 1817
Query 1856 GGATCCATCGACATTCTTGATTCGCGGAAACAATTATCTAAAAAATCAACAAAAGGTAAA 1915
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1818 AGATCCATCGACATTCTTGATTCGTGGAAACAATTATCTAAAAGATCAACAAAAGGTAAA 1877
Query 1916 AGCAAAAGGCACATTGATGCAAATGATTGGAGCTGACTGGATAAGTTCAGATAAGCGGGA 1975
||||||||||||||||||||||||| ||||||| |||||||||||||| |||||| | ||
Sbjct 1878 AGCAAAAGGCACATTGATGCAAATGGTTGGAGCGGACTGGATAAGTTCGGATAAGAGAGA 1937
Query 1976 AGATGATCTTGGTGGACGAATAGGTGGTCTAGTTCAGGAATACGCAGCGAAAGGAAGTCC 2035
||||||||||||||||||| |||||||||||||||| |||| ||||||||||| ||||
Sbjct 1938 AGATGATCTTGGTGGACGAGTAGGTGGTCTAGTTCAAGAATTTGCAGCGAAAGGCGGTCC 1997
Query 2036 CGAGTTTTTCTTCATTGTAAACATACAGGTCCCTGGTTCGGCTATGTACAGTCTAGCATT 2095
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1998 CGAGTTTTTCTTCATTGTAAACATACAGGTCCCCGGTTCGGCTATGTACTCTCTAGCATT 2057
Query 2096 GTACTATATGCTGAAAACACCATTGGAGGAGCATCCTTTGTTAGAGAGTTTTGTGAATGG 2155
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2058 GTACTATATGCTGAAAACTCCATTGGAAGAGCATCCTTTGTTAGAGAGTTTTGTGAATGG 2117
Query 2156 TGACGATGCTTATCGAAACTCGCGCTTTAAACTCATCCCTCATATCTCCAAAGGTTCATG 2215
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 2118 TGACGATGCTTATCGCAACTCGCGCTTTAAACTAATCCCTCATATCTCCAAAGGTTCGTG 2177
Query 2216 GATTGTGAAACAAAGTGTTGGAAAGAAGGCTTGCTTGGTTGGTCAGG-TACTTGAAGTTT 2274
|||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||
Sbjct 2178 GATTGTGAAACAAAGTGTGGGAAAGAAGGCTTGCTTGGTTGGTCAGGCT-CTTGAAGTTC 2236
Query 2275 GTTACACCCGCGGCAAGAACTACTTAGAGCTTGACATTGATGTTGGGTCTTCAACTGTTG 2334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2237 GTTACACCCGCGGCAAGAACTACTTAGAGCTTGACATTGATGTTGGGTCTTCAACTGTTG 2296
Query 2335 CAAGAGGTGTAACCAATCTTGTTCTTGGGTATCTCAACAATTTGGTTATAGAAATGGCAT 2394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2297 CAAGAGGTGTAACCAATCTTGTTCTTGGGTATCTCAACAATTTGGTTATAGAAATGGCAT 2356
Query 2395 TTTTGATACAGGCAAATACAGTAGAGGAACTACCAGAACTGCTACTAGGAACTTGTCGGC 2454
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 2357 TTTTGATACAGGCAAATACAGCAGAGGAACTACCAGAACTGCTACTAGGAACATGTCGGC 2416
Query 2455 TCAATTATCTTGATGTTTCAAAATCTGTAAAAGAAAGGTGAGACATCCTTAACAACAAAC 2514
|||||||||||||||| |||||||||||||||||||| |||||||||| ||| |||||||
Sbjct 2417 TCAATTATCTTGATGTCTCAAAATCTGTAAAAGAAAGATGAGACATCCCTAAGAACAAAC 2476
Query 2515 ACTATTGCAGGAGCAGAGGATATTTTCGATT-TTTGTTTCTTTGTAAAAGCTGTGTTTTA 2573
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2477 AATATTGCAGGAGCAGAGGATATTTTCGATACTTTGTTTCTTTGTAAAAGCTGTGTTT-- 2534
Query 2574 AACTGTGATTCTTGTTATGTCAACTCGTTTTTACACTCAAA-CTGATGTATAGTCAGGAT 2632
|| || || ||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 2535 --CT-TG-TT------ATGTCAACTCGTTTTCACACTCAAAACTGATGTATAGTCAGGAT 2584
Query 2633 CAGTAGTTTGGTTCTCTGTGTTGTCTGATCCAAGATTGAATAAATAAACTTGTTGAT 2689
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 2585 CAGTAGTTTGGTTCTTTGTGTTATCTGATCCAAGATTGAATAAATAAACTTGTTGAT 2641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101548593170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5