BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54810.2
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485891 jgi|Araly1|485891|fgenesh2_kg.5__1883__AT3G54810.2 2442 0.0
> Ahg485891 jgi|Araly1|485891|fgenesh2_kg.5__1883__AT3G54810.2
Length=1598
Score = 2442 bits (1322), Expect = 0.0
Identities = 1530/1623 (94%), Gaps = 43/1623 (3%)
Strand=Plus/Plus
Query 16 tttttttCCCAATCAATCACTCTTCACTTCTCCCCACTCCTTACTCCttttttttttGCC 75
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1 TTTTTTTCCCAATCAATCACTCTTCACTTCTCCCCACTCCTTGCTCCTTTTTTTTTT-CC 59
Query 76 TTTCTAAGCAAtctctctcttcttcttatattctcatatttgattc----ct-t-t-tct 128
|||||||||||||||||||||||||||||||||||| ||||||||| || | | |||
Sbjct 60 TTTCTAAGCAATCTCTCTCTTCTTCTTATATTCTCAAATTTGATTCTTTTCTCTCTCTCT 119
Query 129 ctctcATACGATCTGCACACCACTACTAAGAACAACAGAGCTAGAGAGACTTGCAATAAT 188
||||||||||||||||||| | | |||||||||||||||||||| ||| ||||||||||
Sbjct 120 CTCTCATACGATCTGCACA-C-C-ACTAAGAACAACAGAGCTAGCTAGAGTTGCAATAAT 176
Query 189 TGTAAAACATGATTGGAAC-AAGCTTCCCCGAGGATCTTGATTGTGGCAACTTCTTTGAC 247
||||||| |||||||| || ||||||||| ||||||||||||||||||||||||||||||
Sbjct 177 TGTAAAAGATGATTGG-ACAAAGCTTCCCGGAGGATCTTGATTGTGGCAACTTCTTTGAC 235
Query 248 AACATGGATGATCTCATGGACTTTCCCGGTGGAGATATCGATGTCGGTTTCGGCATAGGT 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 AACATGGATGATCTCATGGACTTTCCCGGTGGAGATATCGATGTCGGTTTCGGCATAGGT 295
Query 308 GACTCCGACTCTTTCCCTACCATCTGGACCACTCATCACGACACGTGGCCTGCCGCTTCT 367
|||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 296 GACTCCGACTCTTTTCCTACAATCTGGACCACTCATCACGACACGTGGCCCGCCGCTTCT 355
Query 368 GATCCTCTCTTCTCTTCCAACACCAACTCTGATTCATCACCTGAGCTCTATGTTCCGTTT 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GATCCTCTCTTCTCTTCCAACACCAACTCTGATTCATCACCTGAGCTCTATGTTCCGTTT 415
Query 428 GAGGACATTGTTAAGGTGGAAAGACCTCCAAGCTTTGTAGAGGAAACATTGGTTGAGAAG 487
|||||||||||||||||||||||||| |||| ||||||||||||| | ||||||||||||
Sbjct 416 GAGGACATTGTTAAGGTGGAAAGACCACCAACCTTTGTAGAGGAATCCTTGGTTGAGAAG 475
Query 488 AAGGAAGATTCGTTTTCGACAAACACTGATTCATCATCTTCTCATAGCCAATTCAGGAGC 547
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 476 AAGGAAGATTCGTTTTCGACAAACACGGATTCATCATCTTCTCATAGCCAATTCAGGAGC 535
Query 548 TCAAGTCCAGTGTCGGTTCTCGAGAGCAGCTCCTCCTCGTCTCAAACCACCAACACAACC 607
||||||||| | ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 536 TCAAGTCCAATTTCGGTTCTCGAAAGCAGCTCCTCCTCGTCCCAAACCACCAACACAACC 595
Query 608 TCCCTTGTTCTCCCTGGAAAGCACGGTCGTCCACGCACAAAACGCCCTCGTCCACCTGTC 667
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 596 TCTCTTGTTCTCCCTGGAAAGCACGGTCGTCCACGCACAAAACGCCCTCGTCCACCGGTC 655
Query 668 CAGGATAAAGATAGAGTCAAAGACAATGTGTGCGGTGGTGACTCGCGCCTCATCATTAGA 727
||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||
Sbjct 656 CAGGATAAAGATAGAGTCAAAGACAATGTGTGCGGGGGGGACTCTCGCCTCATTATTAGA 715
Query 728 ATACCGAAACAGTTTCTCTCTGATCACAACAAGATGATCAACaagaagaagaagaagaag 787
|| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 716 ATCCCAAAACAGTTTCTCTCTGATCACAACAAGATGATCAATAAGAAGAAGAAGAAGAAG 775
Query 788 GCCAAGATTACTTCTTCCTCTTCTTCGTCCGGGATTGATCTTGAAGTCAATGGAAACAAC 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GCCAAGATTACTTCTTCCTCTTCTTCGTCCGGGATTGATCTTGAAGTCAATGGAAACAAC 835
Query 848 GTCGATTCGTATTCTTCAGAGCAATATCCGCTTAGGAAATGTATGCACTGTGAGGTCACC 907
|||||||||||| ||||||||||| | | | ||||||||||||||||||||||||
Sbjct 836 GTCGATTCGTATACTTCAGAGCAA-A---G----G-AAATGTATGCACTGTGAGGTCACC 886
Query 908 AAGACTCCACAGTGGAGGCTTGGTCCAATGGGTCCAAAGACACTTTGCAATGCGTGCGGT 967
||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 887 AAGACTCCACAATGGAGGCTTGGGCCAATGGGTCCAAAGACGCTTTGCAATGCTTGCGGC 946
Query 968 GTACGTTACAAATCAGGGAGGCTTTTCCCGGAGTACCGTCCAGCTGCTAGTCCAACATTT 1027
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 947 GTGCGTTACAAATCAGGGAGGCTTTTCCCGGAGTACCGTCCAGCTGCGAGTCCAACATTT 1006
Query 1028 ACTCCAGCTCTTCACTCAAACTCACACAAGAAAGTGGCTGAAATGAGAAACAAGAGATGC 1087
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1007 ACTCCAGCTCTTCACTCAAACTCACACAAGAAAGTGGCTGAAATGAGAAGCAAGAGATGC 1066
Query 1088 AGTGATGGTAGCTACATAACCGAAGAGAATGATCTGCAAGGGCTGATTCCGAACAATGCC 1147
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1067 AGTGATGGTAGCTACATAACCGAAGAGAATGATCTGCAAGGACTGATTCCGAACAATGCC 1126
Query 1148 TACATTGGCGTAGACTAAAAC-ATAGAGAAGATGATTCGATTTCCATGCGTTGAAGTGAT 1206
||||||||||||||||||||| | ||| |||| |||||||||||||||||||||||||||
Sbjct 1127 TACATTGGCGTAGACTAAAACCA-AGAAAAGAAGATTCGATTTCCATGCGTTGAAGTGAT 1185
Query 1207 TAGATATGCCAGGAGTAGGAAAGAGTCAGTGAGAAGAAAAGTTTTTAGCTTTAGAAGAGA 1266
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1186 TAGATATGCCAGGAGTAGGAAAGAGTCAGTGAGCAGAAAAGTTTT-AGCTTTAGAAGAGA 1244
Query 1267 TGAAGGAAGAGAGCAATCAATTGGAGGGATTAAAA-GTTAGATGAGAATTGATTGTGTTT 1325
|||| ||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1245 TGAATGAAGAGAACAATCAATTGG-GGGATTAAAAAGTTAGATGAGAATTGATTGTGTTT 1303
Query 1326 GTATTATTTTGTATTTGTAGTGTGAATGGGCAAAAAACTCTTGAAACAGAGGAAAAGTAA 1385
||||| || |||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1304 GTATT-TT--GTATTTTTAGTGTGAATGGGCAAAAA-CTCTTGAAACAGAGGAAAAGTAA 1359
Query 1386 GTTGAGGAAGAGCAGAAGATTTTGAAGACATTAGAGAATCATTAGGTGTTGAGTATTACA 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 GTTGAGGAAGAGCAGAAGATTTTGAAGACATTAGAGAATCATTAGGTGTTGAGTATTACA 1419
Query 1446 TTAAAtcttcctcttcttcttttgttctttcaattctttgtatttttattgtgaggattc 1505
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1420 TTAAATCTTCCTCTCCTTCTTTTGTTCTTTCAATTCTTTGTATTTTTCTTGTGAGGATTC 1479
Query 1506 tctttttttttctttttttttttgtagttgatttgtttagctaaaggattcttt-ttt-t 1563
|||||| |||| |||||||| ||||||||||||||||||||||| ||||||| ||| |
Sbjct 1480 TCTTTTCTTTT-TTTTTTTT---GTAGTTGATTTGTTTAGCTAAAGAATTCTTTCTTTCT 1535
Query 1564 tt------gtttttgTTAAAATCCAATGTTATAAATTGTTAATTATTAAATGGTTTTCTT 1617
|| ||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1536 TTTTTTTTGTTTTTGTTAAAATCCAATGTTATAAATTGTTAATTATTAAATTGTTTCCTT 1595
Query 1618 ACC 1620
|||
Sbjct 1596 ACC 1598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60715850530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5