BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54820.1
Length=1229
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485893 jgi|Araly1|485893|fgenesh2_kg.5__1885__AT3G54820.1 1458 0.0
Ahg485715 jgi|Araly1|485715|fgenesh2_kg.5__1707__AT3G53420.1 438 4e-122
Ahg491143 jgi|Araly1|491143|fgenesh2_kg.7__576__AT4G35100.1 326 3e-88
> Ahg485893 jgi|Araly1|485893|fgenesh2_kg.5__1885__AT3G54820.1
Length=1150
Score = 1458 bits (789), Expect = 0.0
Identities = 924/985 (94%), Gaps = 25/985 (3%)
Strand=Plus/Plus
Query 1 ACCACATCAATTCTCTCATATCTCTCTCTCACTTTCGAATATATCTTAAGATAACAGAGA 60
||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 1 ACCACATCAATTCTCTCATTTCTCTCTCTCACTTTCGAATATATC-T----T-------- 47
Query 61 CACATACTCTTAAGTTTGGTGAAGAATAAGAAGACAATGACGAAGGAAGTGGTTGGTGAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 48 -ACATACTCTTAAGTTTGGTGAAGAATAAGAAGACAATGACGAAGGAAGTGGTTGGGGAT 106
Query 121 AAGAGATCTTTCTCCGGGAAAGACTATCAAGACCCACCACCTGAACCTCTATTCGACGCT 180
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 107 AAGAGATCTTTCTCCGGAAAAGACTATCAAGACCCACCGCCTGAACCTCTGTTCGACGCT 166
Query 181 ACTGAGCTTGGGAAGTGGTCTTTCTACAGAGCTCTCATCGCTGAGTTCATAGCCACTCTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 ACTGAGCTTGGGAAGTGGTCTTTCTACAGAGCTCTCATCGCTGAGTTCATAGCCACTCTC 226
Query 241 CTTTTCCTCTATGTCACTATTATGACTGTCATCGGTTACAAGAGCCAGACCGATCCAGCC 300
|| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 227 CTCTTCCTCTATGTCACCGTTATGACTGTCATCGGTTACAAGAGCCAGACCGATCAAGCC 286
Query 301 CTGAATCCTGACCAGTGTACAGGCGTTGGCGTCCTTGGTATCGCATGGGCCTTTGGTGGC 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 287 CTGAATCCTGACCAGTGTGCAGGCGTTGGCGTCCTTGGTATCGCATGGGCCTTTGGTGGC 346
Query 361 ATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCTGGTGGGCATATTAATCCGGCA 420
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 347 ATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCTGGTGGCCATATTAATCCGGCC 406
Query 421 GTGACTTTTGGGCTGTTGTTGGCTCGGAAAGTGACGTTGGTGAGAGCAGTGATGTACATG 480
||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||
Sbjct 407 GTGACTTTTGGGCTGTTATTGGCTCGGAAAGTAACGTTGTTGAGAGCAGTGATGTACATG 466
Query 481 GTGGCTCAGTGCCTCGGTGCCATTTGTGGTGTGGCTTTGGTCAAGGCCTTCCAGTCTGCT 540
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 467 GTGGCTCAGTGCCTCGGTGCCATTTGTGGTGTGGCTTTGGTCAAGTCCTTCCAGTCTGCT 526
Query 541 TACT-TCACCCGCTACGGTGGTGGCGCAAATGGTCTCTCTGACGGTTACAGCATCGGCAC 599
|||| | ||| |||||||||| |||||||| |||||||| || ||||| |||||||||||
Sbjct 527 TACTATAACC-GCTACGGTGGCGGCGCAAACGGTCTCTCCGATGGTTATAGCATCGGCAC 585
Query 600 CGGTGTTGCAGCCGAGATCATTGGTACATTCGTCTTAGTCTACACCGTCTTCTCTGCCAC 659
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 586 CGGTGTTGCCGCCGAGATCATAGGTACATTCGTCTTAGTCTACACCGTCTTCTCTGCCAC 645
Query 660 TGATCCCAAGAGGAGTGCGCGTGACTCTCACGT---T-----CC-TGTATTGGCTCCATT 710
||| ||||||||||||||||||||||||||||| | || |||||||||||| ||
Sbjct 646 TGACCCCAAGAGGAGTGCGCGTGACTCTCACGTCCCTGTAAGCCCTGTATTGGCTCCTTT 705
Query 711 GCCAATTGGATTTGCAGTGTTCATCGTTCACTTAGCTACAATCCCAATCACGGGCACTGG 770
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 ACCAATTGGATTTGCAGTGTTCATCGTTCACTTAGCTACAATCCCAATCACGGGCACTGG 765
Query 771 TATCAACCCTGCAAGAAGTCTCGGAGCTGCAATCATCTACAACAAGGACAAAGCTTGGGA 830
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 CATTAACCCTGCAAGAAGTCTCGGAGCTGCAATCATCTACAACAAGGACAAAGCTTGGGA 825
Query 831 CCATCATTGGATATTCTGGGTGGGTCCGTTTGCTGGTGCAGCCATCGCAGCTTTCTACCA 890
|||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 826 TCATCATTGGATATTCTGGGTGGGTCCGTTTGCGGGTGCAGCCATTGCGGCTTTCTACCA 885
Query 891 TCAGTTTGTGTTGAGGGCTGGTGCGATTAAGGCGCTCGGGTCTTTCAGGAGCCAGCCTCA 950
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 886 TCAGTTTGTGTTGAGGGCTGGTGCGATTAAGGCGCTCGGGTCCTTCAGGAGCCAGCCTCA 945
Query 951 CGTTTAACTTTGATATGCTCTTCCC 975
|||||||||||||| | ||||||||
Sbjct 946 CGTTTAACTTTGATTTTCTCTTCCC 970
Score = 202 bits (109), Expect = 5e-51
Identities = 144/159 (91%), Gaps = 9/159 (6%)
Strand=Plus/Plus
Query 1041 CGGTTGGAGCCAAGTGACGTGTAGTACTAGTATCTAATTTCTAGCTTTGGTGAGGAGAGA 1100
|||||||||||||||||| || | |||||||||||||||||||||||||||||||||
Sbjct 1000 CGGTTGGAGCCAAGTGAC--GT-G---TAGTATCTAATTTCTAGCTTTGGTGAGGAGAGA 1053
Query 1101 TATTTTGAAGTGTCGCTTGCGGGCCAACTTTGAATTGCTACTTCTATGATTAAATCTATG 1160
| ||| |||||||| |||| ||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1054 T-TTT-GAAGTGTCACTTGAGGGCCAACTTTAAATTGCTACTTCTATAATTAAATCTATG 1111
Query 1161 TCTCTACTCCTTGACT-ATTAAGATTGCTCTATTTATTA 1198
|||||||||||||||| | ||| ||||||||||||||||
Sbjct 1112 TCTCTACTCCTTGACTTAATAATATTGCTCTATTTATTA 1150
> Ahg485715 jgi|Araly1|485715|fgenesh2_kg.5__1707__AT3G53420.1
Length=1272
Score = 438 bits (237), Expect = 4e-122
Identities = 599/769 (78%), Gaps = 44/769 (6%)
Strand=Plus/Plus
Query 192 GAAGTGGTCTTTCTACAGAGCTCTCATCGCTGAGTTCATAGCCACTCTCCTTTTCCTCTA 251
|||||||||||| |||||||| ||||||| |||||| |||| |||||||| ||| | ||
Sbjct 303 GAAGTGGTCTTTTTACAGAGCAGTCATCGCCGAGTTCGTAGCTACTCTCCTCTTCTTATA 362
Query 252 TGTCACTATTATGACTGTCATCGGTTACAAGAGCCAGACCGAT-C-CAGCCCTGAATCCT 309
||||| || ||||||||||||||||||||| ||| ||||| | || || | |
Sbjct 363 CGTCACCGTTTTGACTGTCATCGGTTACAAGATTCAGTCCGATACTAAGGCCGGCGGGGT 422
Query 310 -GACCAGTGTACAGGCGTTGGCGTCCTTGGTATCGCATGGGCCTTTGGTGGCATGATCTT 368
|| | | | | || ||||| |||| |||||||| |||||||||||||| ||||||||
Sbjct 423 AGA-CTGCG-GC-GGAGTTGGAATCCTCGGTATCGCTTGGGCCTTTGGTGGTATGATCTT 479
Query 369 CATCCTCGTCTACTGCACCGCCGGCATCTCTGGTGGGCATATTAATCCGGCAGTGACTTT 428
|||||||||||||||||||||||| ||||||||||| || ||||| || || ||||| ||
Sbjct 480 CATCCTCGTCTACTGCACCGCCGGTATCTCTGGTGGTCACATTAACCCAGCGGTGACATT 539
Query 429 TGGGCTGTTGTTGGCTCGGAAAGTGACGTTGG-TGAGAGC-AGTGAT-GTACATGGTGGC 485
|||||| || ||||| || |||||| ||||| | || || | | || |||||| |||||
Sbjct 540 TGGGCTATTCTTGGCACGTAAAGTGTCGTTGCCT-AGGGCCA-T-ATTGTACATTGTGGC 596
Query 486 TCAGTGCCTCGGTGCCATTTGTGGTGT-GGCTTTGGTCAAGGCCTTCCA--GTCTGCTTA 542
|||||| | ||||| |||||||| || || |||| |||| |||||||| | || ||||
Sbjct 597 TCAGTGTTTGGGTGCGATTTGTGGAGTTGGATTTG-TCAAAGCCTTCCAAAG-CT-CTTA 653
Query 543 CT-TCACCCGCTACGGTGGTGGCGCAAATGGTCTCT--CTGACGGTTACAGCATC-GGCA 598
|| | ||| | ||||| ||||| || || ||||| | || || ||||||| | || |
Sbjct 654 CTATGACC-GTTACGGCGGTGGAGCCAAC--TCTCTTGCCGATGGCTACAGCA-CAGGGA 709
Query 599 CCGGTGTTGCAGCCGAGATCATTGGTACATTCGT-CTTAGTCTACACCGTCTTCTCTGCC 657
||||| | || || |||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct 710 CCGGTCTAGCGGCAGAGATCATTGGTACTTTCGTTCTT-GTCTACACCGTCTTCTCTGCC 768
Query 658 ACTGATCCCAAGAGG-AGTGCGC-GTGACTCTCACGTTCCTGTATTGGCTCCA-TTGCCA 714
||||| ||||| | | ||||| | | ||||| |||||||| || ||||| ||| || |||
Sbjct 769 ACTGACCCCAA-ACGTAGTGC-CAGAGACTCCCACGTTCCGGTGTTGGCGCCACTT-CCA 825
Query 715 ATTGGATTTGCAGTGTTCATCGTTCACTTAGCTACAAT-CCCAATCACGGGCACTGGTAT 773
|| ||||| || |||||||| || || || || || || |||| |||| || || || ||
Sbjct 826 ATCGGATTCGCGGTGTTCATGGTACATTTGGCCACCATTCCCA-TCACCGGAACCGGAAT 884
Query 774 CAACCCTGCAAGAAGTCTCGGAGCTGCAATCATCTACAACAAG-GACAAAGCT-TGGGAC 831
||||| ||||| ||| |||||||||| | |||| ||||||| | ||| || |||||
Sbjct 885 TAACCCGGCAAGGAGTTTCGGAGCTGCCGTAATCTTCAACAAGAG-CAA-GCCATGGGAT 942
Query 832 CATCATTGGATATTCTGGGTGGGTCCGTTTGCTGGTGCAGCCATCGCAGCTTTCTACCAT 891
| || |||||||| ||||| || || || ||| || || || || || ||||||||
Sbjct 943 GACCACTGGATATTTTGGGTTGGACCATTCATTGGAGCTGCGATAGCTGCATTCTACCAC 1002
Query 892 CAGTTTGTGT-TGAGGGCTGGTGCGAT-TAAGGCGCTCGGGTCTTTCAG 938
|| || || | |||||||| | | | |||| | ||||| ||||||||
Sbjct 1003 CAATTCGT-TCTGAGGGCTTCAG-GTTCTAAGTCTCTCGGATCTTTCAG 1049
> Ahg491143 jgi|Araly1|491143|fgenesh2_kg.7__576__AT4G35100.1
Length=1045
Score = 326 bits (176), Expect = 3e-88
Identities = 519/679 (76%), Gaps = 46/679 (7%)
Strand=Plus/Plus
Query 196 TGGTCTTTCTACAGAGCTCTCATCGCTGAGTTCATAGCCACTCTCCTTTTCCTCTATGTC 255
||||||||||||||||||||||||||||||||||| || || ||||| |||||||| |||
Sbjct 174 TGGTCTTTCTACAGAGCTCTCATCGCTGAGTTCATCGCTACACTCCTCTTCCTCTACGTC 233
Query 256 ACTATTA-TGACTGTCATCGGTTACAAGA-GCCAGACCGATCCAGCCCTGAATCCTGACC 313
||| | | ||||||||||| |||||| || | |||| | || | | |
Sbjct 234 ACTGTCGCT-ACTGTCATCGGCCACAAGAAGCAA-ACCGGT---GC--T---T---G--- 277
Query 314 AGTGTACAGGCGTTGGCGTCCTTGGTATCGCATGGGCCTTT-GGTGGCATGATCTTCATC 372
|| || |||||||| | || || ||||| ||||| ||| ||||| ||||||||| ||
Sbjct 278 --TG-AC-GGCGTTGGTTTACTCGGCATCGCTTGGGC-TTTCGGTGGTATGATCTTCGTC 332
Query 373 CTCGTCTACTGCACCGCCGGCATCTCTGGTGGGCATATTAATCCGGCAGTGACTTTTGGG 432
||||| |||||||||||||| ||||||||||| || ||||| || || |||||||| ||
Sbjct 333 CTCGTTTACTGCACCGCCGGTATCTCTGGTGGTCACATTAACCCAGCTGTGACTTTCGGT 392
Query 433 CTGTTGTTGGCTCGGAAAGTGACGTTGGTGAGAGCAGT-GATGTACATGGTGGCTCAGTG 491
|| || || || || || || | ||||||||||| | | | |||||| | ||||||||
Sbjct 393 CTATTCTTAGCCCGTAAGGTCTCTTTGGTGAGAGCTCTTGGT-TACATGATAGCTCAGTG 451
Query 492 CCTCGGTGCCATTTGTGGTGTGGCTTTGGTCAAGGCCTTCCA-GT---CTGCTTACTTCA 547
|| || |||||||||||||||| ||| || || || ||| | | || ||||| ||
Sbjct 452 TCTTGGAGCCATTTGTGGTGTGGGTTTCGTGAAAGCTTTC-ATGAAAACTCCTTACAACA 510
Query 548 CCCGCTACGGTGGTGGCGC-AA-ATGGTCTCTCTGACGGTTACAGCATCGGCACCGGTGT 605
| | | ||||| || || || | || || ||||| ||||||| || || | | |
Sbjct 511 CTCT-T--GGTGGAGGAGCTAACACCGTAGCT--GACGGCTACAGCAAAGGAACTGCTCT 565
Query 606 TGCAGCCGAGATCATTGGTACATTCGTC-TTAGTCTACACCGTCTTCTCTGCCACTGATC 664
| ||| ||||| || || || |||||| || || |||||||| |||||||| ||||| |
Sbjct 566 CGGAGCTGAGATTATCGGAACTTTCGTCCTT-GTTTACACCGTTTTCTCTGCAACTGA-C 623
Query 665 CC-AAGAGGAGTGCGCGTGACTCTCACGTTCCTGTATTGGCTCCA-TTGCCAATTGGATT 722
|| ||||| || || |||||||||||| | || || ||||||||| || |||||||||||
Sbjct 624 CCTAAGAGAAGCGCTCGTGACTCTCACATCCCCGTTTTGGCTCCACTT-CCAATTGGATT 682
Query 723 TGCAGTGTTCATCGTTCACTTAGCTACAATCCCAATCACGGGCACTGGTATCAACCCTGC 782
||| |||||||| || || || ||||| ||||| || || || |||||||||||||| ||
Sbjct 683 TGCTGTGTTCATGGTGCATTTGGCTACTATCCCCATTACCGGAACTGGTATCAACCCAGC 742
Query 783 AAGAAG-TCTCGGAGCTGCAATCATCTACAACAAGGACAAAGCTTGGGACCATCATTGGA 841
|||||| | | || ||||| | ||||||||||| || || || ||||| | || ||||
Sbjct 743 AAGAAGCTTT-GGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAATGGA 801
Query 842 TATTCTGGGTGGGTCCGTT 860
| || ||||| ||||||||
Sbjct 802 TCTTTTGGGTTGGTCCGTT 820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45899992068
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5