BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54830.1
Length=1641
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324014 jgi|Araly1|324014|fgenesh1_pm.C_scaffold_5001558 1969 0.0
> Ahg324014 jgi|Araly1|324014|fgenesh1_pm.C_scaffold_5001558
Length=1677
Score = 1969 bits (1066), Expect = 0.0
Identities = 1197/1258 (95%), Gaps = 17/1258 (1%)
Strand=Plus/Plus
Query 1 ATGAATCACTCCACTTCTGACCAGAGCCTCTACATCGAGAGTGATGATGGAGATGACGAG 60
||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGAATCACTCGGCTTCTGATCAGAGCCTCTACATCGAGAGTGATGAAGGAGATGACGAG 60
Query 61 AGAAAACACTTGTCCGACGATGAAGACGACGATGGAACTCTTTCTGATACTTCTGACGCT 120
|||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 61 AGAAAACACTTGTCAGACGATGAAGACGACGATGGAACACTTTCTGATTCTTCTGACGCT 120
Query 121 TACAATCAAAACCAACATCATCTGTCTAAAGCTAGCCCATACTCAACGGCATGGCCTAAG 180
||||||||||||| | | ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 121 TACAATCAAAACC-A-A-CATCTATCTAAAGCTAGCCCATACTCAACGGCATGGCCAAAG 177
Query 181 AGTTATAGGCAATCGATTGATATGTTTGGAAGTG------TACCATCACCAAATTTGGGT 234
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 178 AGTTATAGGCAATCGATTGATATGTTTGGAAGTGTACCAATACCATCACCAAATTTGGGT 237
Query 235 TTTCTTGCTAATTCTTCTATGTCGAGAAG-AGGAAGCTCATTCATGTCTTCGACACTGAC 293
||||||||||||||||| |||||||| || ||||||||| ||| ||||||||||||||||
Sbjct 238 TTTCTTGCTAATTCTTCAATGTCGAG-AGTAGGAAGCTCTTTCTTGTCTTCGACACTGAC 296
Query 294 AAGAAGACATACTCCAGAATCATTACCTTGTGTTACAAAGCCTCTCCTAGAAGATGAAGA 353
||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||
Sbjct 297 AAGAAGACATACTCCAGAATCATTACCATGTGTTACAAAACCTCTCCTAGTAGATGAAGA 356
Query 354 AGCACCAAAACATAAACTTAGCACTCATTCTTTGCTTCCGTCGAAACCATCGTCATCCAT 413
||||||||| ||||| | |||| ||||||| ||||||||| ||||||| |||||||
Sbjct 357 AGCACCAAAGCATAAGCATAGCTCTCATTCCCTGCTTCCGTTGAAACCA---TCATCCA- 412
Query 414 GGTGGTGTCTCATGATATGGGAATCTCCAATGATAGCTCCTTTGGACAGGCTGTTCTTAA 473
||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 413 --TGGTGTCTCATGAAATGGCAATCTCCAATGATAGCTCGTTTGGACAGGCTGTTCTTAA 470
Query 474 TGGAGTGAATGTTTTATGTGGGGTTGGAATATTGTCAACACCATATGCTGTGAAGGAAGG 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TGGAGTGAATGTTTTATGTGGGGTTGGAATATTGTCAACACCATATGCTGTGAAGGAAGG 530
Query 534 AGGATGGTTGGGACTTATCATTCTCTTTGCATTTGGTATTCTTTGTTTTTACACCGGTTT 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 AGGATGGTTGGGACTTATCATTCTCTTTGCATTTGGTATTCTTTGTTTTTACACCGGTTT 590
Query 594 GCTTCTGCGGTACTGCCTCGACAGCCACCCCGATGTCCAGACCTATCCTGATATTGGCCA 653
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 591 GCTTTTGCGGTACTGCCTCGATAGCCACCCCGATGTCCAGACCTATCCTGATATTGGCCA 650
Query 654 TGCCGCTTTTGGTTCCACCGGCCGCATCCTGGTCTCCGTAATACTCTATATGGAGTTATA 713
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 651 TGCCGCTTTTGGTTCCACCGGCCGCATCCTGGTCTCTGTAATACTCTATATGGAGCTATA 710
Query 714 TGCTATGAGTGTTGAATACATAATATTGGAAGGTGATAATCTTTCATCAATGTTTCCAAA 773
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 711 TGCTATGAGTGTTGAATACATAATTTTGGAAGGTGATAATCTTTCATCAATGTTTCCAAA 770
Query 774 TGCTAGTCTAAGTATTGGAGGGTTTCACTTAGATGCGCCTCGTCTATTTGCTCTGCTTAC 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TGCTAGTCTAAGTATTGGAGGGTTTCACTTAGATGCGCCTCGTCTATTTGCTCTGCTTAC 830
Query 834 CACCCTCGCTGTTCTCCCAACCGTTTGGCTTCGAGATCTCAGCGTACTAAGTTACATTTC 893
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 831 CACCCTCGCTGTTCTCCCAACCGTATGGCTTCGAGACCTCAGCGTACTAAGTTACATATC 890
Query 894 AGCTGGAGGGGTGATTGCATCAGtgttggtggttttgtgcttgttttgggttggtttggt 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 AGCTGGAGGGGTGATTGCATCAGTGTTGGTGGTTTTGTGCTTGTTTTGGGTTGGTTTGGT 950
Query 954 tgatgatgttggtATTCACAGCAAAGGAACTCCACTAAACCTCGCAACATTACCGGTTTC 1013
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 951 TGATGATGTTGGTATTCACAGCAAAGGAACTCCACTAAACCTCGCAACATTGCCGGTTTC 1010
Query 1014 TGTAGGACTCTATGGTTATTGTTACTCAGGACATGGTGTTTTCCCTAATATTTACACTTC 1073
||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1011 TGTAGGACTCTATGGTTATTGTTACTCAGGACATGGTGTTTTCCCAAATATATATACTTC 1070
Query 1074 AATGGCCAAACCATCTCAATTTTCTGCTGTTCTCTTGGCATCTTTTGGAATTTGTACTCT 1133
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1071 TATGGCCAAACCATCTCAATTTCCTGCTGTTCTCTTGGCATCTTTTGGAATTTGCACTCT 1130
Query 1134 TATGTATGCGGGTGTTGCTGTTATGGGATATAGCATGTTTGGAGAATCAACAGAATCACA 1193
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 GATGTATGCGGCTGTGGCTGTTATGGGATATAGCATGTTTGGAGAATCAACAGAATCACA 1190
Query 1194 GTTTACTCTTAACTTGCCTCAAGATTTGGTTGCATCTAAGATTGCTTTGTGGACTACA 1251
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 GTTTACTCTTAACCTGCCTCAAGATTTGGTTGCATCTAAGATTGCTTTGTGGACTACA 1248
Score = 211 bits (114), Expect = 1e-53
Identities = 120/123 (98%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 1316 TTGCAATGAGTCTTGAGGAGTTAATACCATCAAACTATGGGAAGTCACGTTTCTACGCAA 1375
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1283 TTGCAATGAGTCTTGAGGAGTTAATACCATCAAACCATGGGAAGTCACGTTTCTACTCAA 1342
Query 1376 TCGCCATTAGAAGTGCATTAGCCATCTCTACTCTGCTCGTTGGTCTTGCGATTCCCTTCT 1435
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1343 TCGCCATTAGAAGTGCATTAGCCTTCTCTACTCTGCTCGTTGGTCTTGCGATTCCCTTCT 1402
Query 1436 TCG 1438
|||
Sbjct 1403 TCG 1405
Score = 102 bits (55), Expect = 8e-21
Identities = 61/64 (95%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 1495 GACGCTGATACTACCGCCAGCTTGTTTCTTGAGCATCTTAAGGAAAAAAGTAACCCCTAC 1554
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1405 GACGCTGATACTACCGCCAGCTTGTTTCTTAAGCATCTTAAGGCGAAAAGTAACCCCTAC 1464
Query 1555 TCAG 1558
||||
Sbjct 1465 TCAG 1468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61515745675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5