BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54840.1
Length=1013
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898422 jgi|Araly1|898422|Al_scaffold_0005_2388 1020 0.0
> Ahg898422 jgi|Araly1|898422|Al_scaffold_0005_2388
Length=609
Score = 1020 bits (552), Expect = 0.0
Identities = 590/609 (97%), Gaps = 0/609 (0%)
Strand=Plus/Plus
Query 186 ATGGGATGTGCTTCTTCTCTTCCAGATAGGAACTCTGGAACTTTAAGTGGTCTTAGCAAT 245
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGGATGTGCTACTTCTCTTCCAGATAGGAACTCTGGAGCTTTAAGTGGTCTTAGCAAT 60
Query 246 TCAGAGAATGCTGTTCCAGCTGATGCCAAAAATCTACGTGTGAAGTTAGTTCTATTAGGA 305
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TCAGAGAATGCTGTTCCAGCTGATGCTAAAAATCTACGTGTGAAGTTAGTTCTATTAGGA 120
Query 306 GACTCTGGTGTTGGTAAAAGTTGTATTGTCCTTCGATTTGTACGTGGTCAGTTTGACGCT 365
|| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GATTCTGGTGTTGGTAAAAGCTGTATTGTCCTTCGATTTGTTCGTGGTCAGTTTGACGCT 180
Query 366 ACATCTAAGGTAACTGTTGGAGCCTCGTTCTTGTCCCAAACTATAGCATTGCAAGACTCT 425
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 ACATCTAAGGTAACTGTTGGAGCCTCGTTCTTGTCCCAAACAATAGCATTGCAAGACTCT 240
Query 426 ACCACAGTGAAGTTTGAAATATGGGATACAGCAGGACAGGAGAGGTATTCTGCTCTTGCA 485
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 ACCACAGTGAAGTTTGAAATATGGGATACAGCAGGACAAGAGAGGTATTCTGCTCTTGCA 300
Query 486 CCACTATACTACCGTGGAGCTGGAGTTGCTGTTATTGTGTATGATATAACAAGCCCTGAA 545
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 CCACTATACTACCGTGGAGCTGGAGTTGCTGTTATTGTGTATGATATAACAAGTCCTGAA 360
Query 546 TCGTTCAAGAAAGCACAGTATTGGGTTAAGGAACTGCAAAAGCATGGAAGCCCAGATATT 605
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCGTTCAAGAAAGCTCAGTATTGGGTTAAGGAACTGCAAAAGCATGGAAGCCCAGATATT 420
Query 606 GTTATGGCTCTGGTTGGTAACAAAGCTGATCTACATGAAAAAAGAGAAGTACCTACTGAG 665
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 421 GTTATGGCTCTGGTTGGTAACAAAGCTGATCTACATGAGAAAAGAGAAGTACCAACCGAG 480
Query 666 GATGGAATGGAGCTTGCAGAGAAGAACGGCATGTTCTTCATTGAGACGTCAGCCAAGACA 725
||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 481 GATGGGATAGAGCTTGCAGAGAAGAACGGCATGTTCTTTATTGAGACGTCAGCCAAAACA 540
Query 726 GCCGATAACATAAATCAACTGTTTGAGGAAATTGGCAAGAGGCTACCTCGTCCTGCTCCT 785
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 GCCGATAACATAAATCAACTGTTTGAGGAAATCGGCAAGAGGCTACCTCGTCCTGCTCCT 600
Query 786 TCGTCATGA 794
||||||||
Sbjct 601 GCGTCATGA 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37665441996
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5