BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G54840.1 Length=1013 Score E Sequences producing significant alignments: (Bits) Value Ahg898422 jgi|Araly1|898422|Al_scaffold_0005_2388 1020 0.0 > Ahg898422 jgi|Araly1|898422|Al_scaffold_0005_2388 Length=609 Score = 1020 bits (552), Expect = 0.0 Identities = 590/609 (97%), Gaps = 0/609 (0%) Strand=Plus/Plus Query 186 ATGGGATGTGCTTCTTCTCTTCCAGATAGGAACTCTGGAACTTTAAGTGGTCTTAGCAAT 245 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1 ATGGGATGTGCTACTTCTCTTCCAGATAGGAACTCTGGAGCTTTAAGTGGTCTTAGCAAT 60 Query 246 TCAGAGAATGCTGTTCCAGCTGATGCCAAAAATCTACGTGTGAAGTTAGTTCTATTAGGA 305 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 61 TCAGAGAATGCTGTTCCAGCTGATGCTAAAAATCTACGTGTGAAGTTAGTTCTATTAGGA 120 Query 306 GACTCTGGTGTTGGTAAAAGTTGTATTGTCCTTCGATTTGTACGTGGTCAGTTTGACGCT 365 || ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 121 GATTCTGGTGTTGGTAAAAGCTGTATTGTCCTTCGATTTGTTCGTGGTCAGTTTGACGCT 180 Query 366 ACATCTAAGGTAACTGTTGGAGCCTCGTTCTTGTCCCAAACTATAGCATTGCAAGACTCT 425 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 181 ACATCTAAGGTAACTGTTGGAGCCTCGTTCTTGTCCCAAACAATAGCATTGCAAGACTCT 240 Query 426 ACCACAGTGAAGTTTGAAATATGGGATACAGCAGGACAGGAGAGGTATTCTGCTCTTGCA 485 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 241 ACCACAGTGAAGTTTGAAATATGGGATACAGCAGGACAAGAGAGGTATTCTGCTCTTGCA 300 Query 486 CCACTATACTACCGTGGAGCTGGAGTTGCTGTTATTGTGTATGATATAACAAGCCCTGAA 545 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 301 CCACTATACTACCGTGGAGCTGGAGTTGCTGTTATTGTGTATGATATAACAAGTCCTGAA 360 Query 546 TCGTTCAAGAAAGCACAGTATTGGGTTAAGGAACTGCAAAAGCATGGAAGCCCAGATATT 605 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TCGTTCAAGAAAGCTCAGTATTGGGTTAAGGAACTGCAAAAGCATGGAAGCCCAGATATT 420 Query 606 GTTATGGCTCTGGTTGGTAACAAAGCTGATCTACATGAAAAAAGAGAAGTACCTACTGAG 665 |||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||| Sbjct 421 GTTATGGCTCTGGTTGGTAACAAAGCTGATCTACATGAGAAAAGAGAAGTACCAACCGAG 480 Query 666 GATGGAATGGAGCTTGCAGAGAAGAACGGCATGTTCTTCATTGAGACGTCAGCCAAGACA 725 ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 481 GATGGGATAGAGCTTGCAGAGAAGAACGGCATGTTCTTTATTGAGACGTCAGCCAAAACA 540 Query 726 GCCGATAACATAAATCAACTGTTTGAGGAAATTGGCAAGAGGCTACCTCGTCCTGCTCCT 785 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 541 GCCGATAACATAAATCAACTGTTTGAGGAAATCGGCAAGAGGCTACCTCGTCCTGCTCCT 600 Query 786 TCGTCATGA 794 |||||||| Sbjct 601 GCGTCATGA 609 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37665441996 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5