BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54850.1
Length=2173
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938412 jgi|Araly1|938412|scaffold_502603.1 3044 0.0
> Ahg938412 jgi|Araly1|938412|scaffold_502603.1
Length=1945
Score = 3044 bits (1648), Expect = 0.0
Identities = 1850/1949 (95%), Gaps = 8/1949 (0%)
Strand=Plus/Plus
Query 82 TGGAACAGTAAAA-TCTGAGGGATGGGATTAACGAATTGTTGTTCCCACGAGGAGCTAAT 140
||| |||| |||| || |||||||||||||||||| |||||||||||||||| ||||
Sbjct 3 TGG-ACAGCAAAATTC-AAGGGATGGGATTAACGAA---TTGTTCCCACGAGGAGTTAAT 57
Query 141 GAGTCGACTCGTTGACTCCGTTAAAGAAATATCAGGGTTTTCATCTTCAAGGGGTTTTAT 200
|||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 58 GAGTCGACTCGTTGACTCGGTGAAAGAAATATCTGGGTTTTCATCTTCAAGGGGTTTTAT 117
Query 201 TGGGAAGATCCAAGGCGATCTTGTTCGTAGGATCACGCTTCTCAGCCCTTTCTTCGAGGA 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TGGGAAGATCCAAGGCGATCTTGTTCGTAGGATCACGCTTCTCAGCCCTTTCTTCGAGGA 177
Query 261 ATTGATTGACGTCAATGTTGAATTGAAAAAGGATCAGATTACAGGGTTTGAGGCTATGAG 320
|||||| ||||| |||||||||||||| ||||||| ||| |||||||||||| ||||||
Sbjct 178 ATTGATAGACGTTAATGTTGAATTGAAGGAGGATCAAATTGCAGGGTTTGAGGTTATGAG 237
Query 321 AATCGCTCTTGATTCAAGTCTTGAGCTTTTTCGATCGGTTAATGGAGGAAGCAAGCTTTT 380
|||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||
Sbjct 238 AATCGCTCTTGATTCAAGTCTTGAGCTTTTTCGATCCGTTCATGGAGGCAGCAAGCTTTT 297
Query 381 TCAGCTTTTCGATAGAGATTCTCTTGTGGAGAAGTTCCGTGACATGACAGTGGAGATAGA 440
|||| ||||||||||||||||||||||| |||||||| ||||||| |||||||||||
Sbjct 298 TCAGATTTTCGATAGAGATTCTCTTGTGCTGAAGTTCCACAACATGACGGTGGAGATAGA 357
Query 441 AGCAGCGTTAAGTCAGATTCCTTATGAGAAGATTGAGGTATCAGAGGAAGTCAGAGAACA 500
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 358 AGCAGCGTTAAGTCAAATTCCTTATGATAAGATTGAGGTATCAGAGGAAGTCAGAGAACA 417
Query 501 GGTTCAGCTTCTGCATTTTCAGTTCAAGAGAGCAAAAGAAAGATGGGAGGAGTCTGATCT 560
||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||| |
Sbjct 418 GGTTCAGCTTCTGCATTTTCAGTTCAAGAGAGCAAAAGAAAGACGGGAAGAGTATGATAT 477
Query 561 ACAGCTTAGCCATGATCTAGCTATGGCAGAGAATGTGATGGATCCTGACCCTA-TAATCC 619
||||||||||||||||||||| ||||||||| |||| |||||||||||||||| || |||
Sbjct 478 ACAGCTTAGCCATGATCTAGCCATGGCAGAGGATGTAATGGATCCTGACCCTAATA-TCC 536
Query 620 TCAAAAGACTTTCACAAGAGCTCCAACTTACTACCATTGATGAGCTGAAGAAAGAATCGC 679
|||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||| |
Sbjct 537 TCAAAAAACTTTCACAAGAGCTCCAACTTAGTACCATTGATGAACTGAAGAAAGAATCAC 596
Query 680 ATGCGATACATGAGTATTTTCTTTCATATGATGGAGATCCTGATGACTGTTTCGAGAGGA 739
|||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 597 ATGCAATACATGAATATTTTCTTTCATATGATGGGGATCCTGATGACTGTTTCGAGAGGA 656
Query 740 TGTCTTCACTTCTTAAAAACCTGGTAGACTTTGTAACAATGGAAAGTTCAGACCCTGATC 799
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 657 TGTCCTCACTTCTTAAAAAGCTGGTAGACTTTGTAACAATGGAAAGTTCAGACCCCGATC 716
Query 800 CATCCACTGGCAGCAGAATCGTTTCGAGACATCGTTCTCCTGTTATACCAGAGTATTTTC 859
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 717 CATCCACTGGCAACAGAATCATTTCGAGACATCGTTCTCCTGTTATACCAGAGTATTTTC 776
Query 860 GGTGTCCGATATCACTTGAACTGATGAAGGATCCTGTTATCGTCTCCACTGGACAGACAT 919
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 777 GGTGTCCGATATCACTTGAACTGATGAAAGATCCTGTTATCGTTTCCACTGGACAGACAT 836
Query 920 ATGAAAGATCATCAATTCAGAAGTGGCTTGATGCTGGTCATAAAACATGTCCGAAATCTC 979
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 837 ATGAAAGATCATCAATTCAGAAGTGGCTTGATGCTGGTCATAAAACCTGTCCGAAATCTC 896
Query 980 AGGAGACACTTTTACATGCTGGATTAACCCCTAATTATGTGTTAAAGAGTCTCATTGCTT 1039
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 897 AGGAGACACTTTTACATGCTGGATTAACCCCTAATTACGTGTTAAAGAGTCTCATTGCTC 956
Query 1040 TGTGGTGTGAAAGCAACGGCATTGAGCTACCGCAAAATCAAGGGAGCTGTAGAACCACAA 1099
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 957 TGTGGTGTGAAAGCAACGGCATTGAGCTACCGCAAAATCAAGGGAGCTGCAGAACCACAA 1016
Query 1100 AAATAGGAGGAAGCAGCTCTTCAGATTGTGATCGAACATTTGTCCTTTCCTTGTTAGAGA 1159
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1017 AAACAGGAGGAAGCAGCTCTTCAGATTGTGATCGAACATTTGTCGTTTCCTTGTTAGAGA 1076
Query 1160 AATTGGCCAACGGTACTACAGAACAGCAAAGAGCTGCAGCTGGAGAATTAAGGTTACTAG 1219
|||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1077 AATTGGCCAATGGTACTACCGAACAGCAAAGAGCTGCAGCTGGAGAATTACGGTTACTAG 1136
Query 1220 CCAAGAGGAACGTGGATAACAGAGTTTGTATCGCTGAGGCTGGAGCCATACCACTCCTTG 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1137 CCAAGAGGAACGTGGATAACAGAGTTTGTATCGCTGAGGCTGGAGCCATACCACTGCTTG 1196
Query 1280 TAGAGCTTCTATCCTCACCAGATCCTCGGACTCAGGAACATTCTGTGACAGCTCTTCTGA 1339
|||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 1197 TAGAGCTTCTGTCCTCACCAGATCCTCGGACTCAAGAACATTCTGTGACGGCTCTTCTCA 1256
Query 1340 ATCTTTCCATAAATGAAGGGAACAAAGGAGCCATTGTTGATGCAGGAGCCATAACGGATA 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1257 ATCTTTCCATAAATGAAGGGAACAAAGGAGCCATTGTTGATGCAGGAGCCATAACAGATA 1316
Query 1400 TAGTAGAAGTCCTAAAGAACGGAAGCATGGAAGCTAGAGAGAACGCTGCTGCAACCCTTT 1459
| |||||||| ||||| |||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 1317 TTGTAGAAGTACTAAAAAACGGAAGCATGGAGGCTAGAGAGAACGCAGCTGCGACCCTTT 1376
Query 1460 TCAGTTTATCTGTTATAGATGAAAACAAAGTGGCAATAGGTGCTGCTGGAGCTATCCAAG 1519
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1377 TCAGTTTATCTGTTATAGATGAAAACAAAGTGGCGATAGGTGCTGCTGGAGCTATCCAAG 1436
Query 1520 CACTTATAAGCTTGCTTGAGGAAGGAACCCGAAGAGGCAAAAAAGATGCTGCTACAGCGA 1579
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1437 CACTTATAAGCTTGCTTGAGGAAGGAACCCGAAGAGGCAAAAAAGACGCTGCAACAGCGA 1496
Query 1580 TTTTCAACTTATGCATATACCAGGGGAACAAATCAAGGGCGGTTAAAGGCGGTATTGTTG 1639
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TTTTCAATTTATGCATATACCAGGGGAACAAATCAAGGGCGGTTAAAGGCGGTATTGTTG 1556
Query 1640 ACCCTCTGACCAGATTACTGAAAGATGCAGGTGGCGGAATGGTGGATGAGGCTCTGGCCA 1699
|||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| |
Sbjct 1557 ACCCTCTGACAAGATTACTAAAAGATGCAGGTGGCGGAATGGTGGATGAGGCTTTGGCGA 1616
Query 1700 TTTTAGCAATTCTTTCAACTAACCAAGAAGGGAAAACAGCGATAGCTGAAGCAGAATCTA 1759
|| | ||||||||||| || ||||||||||||||| |||||||||||||||||||||| |
Sbjct 1617 TTCTGGCAATTCTTTCGACAAACCAAGAAGGGAAAGCAGCGATAGCTGAAGCAGAATCGA 1676
Query 1760 TCCCGGTTTTGGTTGAGATTATAAGGACAGGGTCACCAAGGAACCGGGAAAATGCTGCAG 1819
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1677 TCCCAGTTTTGGTTGAGATTATAAGGACAGGGTCACCAAGGAACCGAGAAAATGCTGCAG 1736
Query 1820 CAATACTTTGGTATCTATGTATTGGGAATATAGAAAGGCTAAATGTAGCAAGAGAGGTTG 1879
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1737 CAATACTTTGGTATCTATGTATTGGGAATATGGAAAGGCTAAATGTTGCAAGAGAGGTTG 1796
Query 1880 GTGCAGATGTGGCCTTGAAGGAACTTACTGAGAATGGCACTGATAGAGCAAAGAGGAAAG 1939
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1797 GTGCAGATGTGGCCTTGAAGGAACTTACTGAGAATGGAACTGATAGAGCAAAGAGGAAAG 1856
Query 1940 CTGCGAGCTTGTTGGAGCTTATTCAGCAAACCGAAGGTGTTGCAGTAACTACTGTTCCAT 1999
||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||
Sbjct 1857 CTGCGAGCTTGTTGGAGCTCATTCAGCAAACCGAAGTTGTTGCAGTATCTACTGTTCCAT 1916
Query 2000 GAAAGCCTCGCTCTTTTGGAATGTTATTT 2028
|||||||||| |||| |||||||||||||
Sbjct 1917 GAAAGCCTCGGTCTTGTGGAATGTTATTT 1945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81779756015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5