BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G54850.1 Length=2173 Score E Sequences producing significant alignments: (Bits) Value Ahg938412 jgi|Araly1|938412|scaffold_502603.1 3044 0.0 > Ahg938412 jgi|Araly1|938412|scaffold_502603.1 Length=1945 Score = 3044 bits (1648), Expect = 0.0 Identities = 1850/1949 (95%), Gaps = 8/1949 (0%) Strand=Plus/Plus Query 82 TGGAACAGTAAAA-TCTGAGGGATGGGATTAACGAATTGTTGTTCCCACGAGGAGCTAAT 140 ||| |||| |||| || |||||||||||||||||| |||||||||||||||| |||| Sbjct 3 TGG-ACAGCAAAATTC-AAGGGATGGGATTAACGAA---TTGTTCCCACGAGGAGTTAAT 57 Query 141 GAGTCGACTCGTTGACTCCGTTAAAGAAATATCAGGGTTTTCATCTTCAAGGGGTTTTAT 200 |||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| Sbjct 58 GAGTCGACTCGTTGACTCGGTGAAAGAAATATCTGGGTTTTCATCTTCAAGGGGTTTTAT 117 Query 201 TGGGAAGATCCAAGGCGATCTTGTTCGTAGGATCACGCTTCTCAGCCCTTTCTTCGAGGA 260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 TGGGAAGATCCAAGGCGATCTTGTTCGTAGGATCACGCTTCTCAGCCCTTTCTTCGAGGA 177 Query 261 ATTGATTGACGTCAATGTTGAATTGAAAAAGGATCAGATTACAGGGTTTGAGGCTATGAG 320 |||||| ||||| |||||||||||||| ||||||| ||| |||||||||||| |||||| Sbjct 178 ATTGATAGACGTTAATGTTGAATTGAAGGAGGATCAAATTGCAGGGTTTGAGGTTATGAG 237 Query 321 AATCGCTCTTGATTCAAGTCTTGAGCTTTTTCGATCGGTTAATGGAGGAAGCAAGCTTTT 380 |||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| Sbjct 238 AATCGCTCTTGATTCAAGTCTTGAGCTTTTTCGATCCGTTCATGGAGGCAGCAAGCTTTT 297 Query 381 TCAGCTTTTCGATAGAGATTCTCTTGTGGAGAAGTTCCGTGACATGACAGTGGAGATAGA 440 |||| ||||||||||||||||||||||| |||||||| ||||||| ||||||||||| Sbjct 298 TCAGATTTTCGATAGAGATTCTCTTGTGCTGAAGTTCCACAACATGACGGTGGAGATAGA 357 Query 441 AGCAGCGTTAAGTCAGATTCCTTATGAGAAGATTGAGGTATCAGAGGAAGTCAGAGAACA 500 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 358 AGCAGCGTTAAGTCAAATTCCTTATGATAAGATTGAGGTATCAGAGGAAGTCAGAGAACA 417 Query 501 GGTTCAGCTTCTGCATTTTCAGTTCAAGAGAGCAAAAGAAAGATGGGAGGAGTCTGATCT 560 ||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||| | Sbjct 418 GGTTCAGCTTCTGCATTTTCAGTTCAAGAGAGCAAAAGAAAGACGGGAAGAGTATGATAT 477 Query 561 ACAGCTTAGCCATGATCTAGCTATGGCAGAGAATGTGATGGATCCTGACCCTA-TAATCC 619 ||||||||||||||||||||| ||||||||| |||| |||||||||||||||| || ||| Sbjct 478 ACAGCTTAGCCATGATCTAGCCATGGCAGAGGATGTAATGGATCCTGACCCTAATA-TCC 536 Query 620 TCAAAAGACTTTCACAAGAGCTCCAACTTACTACCATTGATGAGCTGAAGAAAGAATCGC 679 |||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||| | Sbjct 537 TCAAAAAACTTTCACAAGAGCTCCAACTTAGTACCATTGATGAACTGAAGAAAGAATCAC 596 Query 680 ATGCGATACATGAGTATTTTCTTTCATATGATGGAGATCCTGATGACTGTTTCGAGAGGA 739 |||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 597 ATGCAATACATGAATATTTTCTTTCATATGATGGGGATCCTGATGACTGTTTCGAGAGGA 656 Query 740 TGTCTTCACTTCTTAAAAACCTGGTAGACTTTGTAACAATGGAAAGTTCAGACCCTGATC 799 |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 657 TGTCCTCACTTCTTAAAAAGCTGGTAGACTTTGTAACAATGGAAAGTTCAGACCCCGATC 716 Query 800 CATCCACTGGCAGCAGAATCGTTTCGAGACATCGTTCTCCTGTTATACCAGAGTATTTTC 859 |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 717 CATCCACTGGCAACAGAATCATTTCGAGACATCGTTCTCCTGTTATACCAGAGTATTTTC 776 Query 860 GGTGTCCGATATCACTTGAACTGATGAAGGATCCTGTTATCGTCTCCACTGGACAGACAT 919 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 777 GGTGTCCGATATCACTTGAACTGATGAAAGATCCTGTTATCGTTTCCACTGGACAGACAT 836 Query 920 ATGAAAGATCATCAATTCAGAAGTGGCTTGATGCTGGTCATAAAACATGTCCGAAATCTC 979 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 837 ATGAAAGATCATCAATTCAGAAGTGGCTTGATGCTGGTCATAAAACCTGTCCGAAATCTC 896 Query 980 AGGAGACACTTTTACATGCTGGATTAACCCCTAATTATGTGTTAAAGAGTCTCATTGCTT 1039 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 897 AGGAGACACTTTTACATGCTGGATTAACCCCTAATTACGTGTTAAAGAGTCTCATTGCTC 956 Query 1040 TGTGGTGTGAAAGCAACGGCATTGAGCTACCGCAAAATCAAGGGAGCTGTAGAACCACAA 1099 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 957 TGTGGTGTGAAAGCAACGGCATTGAGCTACCGCAAAATCAAGGGAGCTGCAGAACCACAA 1016 Query 1100 AAATAGGAGGAAGCAGCTCTTCAGATTGTGATCGAACATTTGTCCTTTCCTTGTTAGAGA 1159 ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1017 AAACAGGAGGAAGCAGCTCTTCAGATTGTGATCGAACATTTGTCGTTTCCTTGTTAGAGA 1076 Query 1160 AATTGGCCAACGGTACTACAGAACAGCAAAGAGCTGCAGCTGGAGAATTAAGGTTACTAG 1219 |||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 1077 AATTGGCCAATGGTACTACCGAACAGCAAAGAGCTGCAGCTGGAGAATTACGGTTACTAG 1136 Query 1220 CCAAGAGGAACGTGGATAACAGAGTTTGTATCGCTGAGGCTGGAGCCATACCACTCCTTG 1279 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1137 CCAAGAGGAACGTGGATAACAGAGTTTGTATCGCTGAGGCTGGAGCCATACCACTGCTTG 1196 Query 1280 TAGAGCTTCTATCCTCACCAGATCCTCGGACTCAGGAACATTCTGTGACAGCTCTTCTGA 1339 |||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| | Sbjct 1197 TAGAGCTTCTGTCCTCACCAGATCCTCGGACTCAAGAACATTCTGTGACGGCTCTTCTCA 1256 Query 1340 ATCTTTCCATAAATGAAGGGAACAAAGGAGCCATTGTTGATGCAGGAGCCATAACGGATA 1399 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1257 ATCTTTCCATAAATGAAGGGAACAAAGGAGCCATTGTTGATGCAGGAGCCATAACAGATA 1316 Query 1400 TAGTAGAAGTCCTAAAGAACGGAAGCATGGAAGCTAGAGAGAACGCTGCTGCAACCCTTT 1459 | |||||||| ||||| |||||||||||||| |||||||||||||| ||||| ||||||| Sbjct 1317 TTGTAGAAGTACTAAAAAACGGAAGCATGGAGGCTAGAGAGAACGCAGCTGCGACCCTTT 1376 Query 1460 TCAGTTTATCTGTTATAGATGAAAACAAAGTGGCAATAGGTGCTGCTGGAGCTATCCAAG 1519 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1377 TCAGTTTATCTGTTATAGATGAAAACAAAGTGGCGATAGGTGCTGCTGGAGCTATCCAAG 1436 Query 1520 CACTTATAAGCTTGCTTGAGGAAGGAACCCGAAGAGGCAAAAAAGATGCTGCTACAGCGA 1579 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 1437 CACTTATAAGCTTGCTTGAGGAAGGAACCCGAAGAGGCAAAAAAGACGCTGCAACAGCGA 1496 Query 1580 TTTTCAACTTATGCATATACCAGGGGAACAAATCAAGGGCGGTTAAAGGCGGTATTGTTG 1639 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1497 TTTTCAATTTATGCATATACCAGGGGAACAAATCAAGGGCGGTTAAAGGCGGTATTGTTG 1556 Query 1640 ACCCTCTGACCAGATTACTGAAAGATGCAGGTGGCGGAATGGTGGATGAGGCTCTGGCCA 1699 |||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| | Sbjct 1557 ACCCTCTGACAAGATTACTAAAAGATGCAGGTGGCGGAATGGTGGATGAGGCTTTGGCGA 1616 Query 1700 TTTTAGCAATTCTTTCAACTAACCAAGAAGGGAAAACAGCGATAGCTGAAGCAGAATCTA 1759 || | ||||||||||| || ||||||||||||||| |||||||||||||||||||||| | Sbjct 1617 TTCTGGCAATTCTTTCGACAAACCAAGAAGGGAAAGCAGCGATAGCTGAAGCAGAATCGA 1676 Query 1760 TCCCGGTTTTGGTTGAGATTATAAGGACAGGGTCACCAAGGAACCGGGAAAATGCTGCAG 1819 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1677 TCCCAGTTTTGGTTGAGATTATAAGGACAGGGTCACCAAGGAACCGAGAAAATGCTGCAG 1736 Query 1820 CAATACTTTGGTATCTATGTATTGGGAATATAGAAAGGCTAAATGTAGCAAGAGAGGTTG 1879 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 1737 CAATACTTTGGTATCTATGTATTGGGAATATGGAAAGGCTAAATGTTGCAAGAGAGGTTG 1796 Query 1880 GTGCAGATGTGGCCTTGAAGGAACTTACTGAGAATGGCACTGATAGAGCAAAGAGGAAAG 1939 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1797 GTGCAGATGTGGCCTTGAAGGAACTTACTGAGAATGGAACTGATAGAGCAAAGAGGAAAG 1856 Query 1940 CTGCGAGCTTGTTGGAGCTTATTCAGCAAACCGAAGGTGTTGCAGTAACTACTGTTCCAT 1999 ||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||| Sbjct 1857 CTGCGAGCTTGTTGGAGCTCATTCAGCAAACCGAAGTTGTTGCAGTATCTACTGTTCCAT 1916 Query 2000 GAAAGCCTCGCTCTTTTGGAATGTTATTT 2028 |||||||||| |||| ||||||||||||| Sbjct 1917 GAAAGCCTCGGTCTTGTGGAATGTTATTT 1945 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81779756015 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5