BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54860.2
Length=2099
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485899 jgi|Araly1|485899|fgenesh2_kg.5__1891__AT3G54860.1 1711 0.0
> Ahg485899 jgi|Araly1|485899|fgenesh2_kg.5__1891__AT3G54860.1
Length=1962
Score = 1711 bits (926), Expect = 0.0
Identities = 1007/1046 (96%), Gaps = 6/1046 (1%)
Strand=Plus/Plus
Query 976 TGATAAGTTGTTCAAGGAGACAAGGGATCTCAACTTTGAAGTCGTTGTACAGGTTCTACG 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TGATAAGTTGTTCAAGGAGACAAGGGATCTCAACTTTGAAGTCGTTGTACAGGTTCTACG 948
Query 1036 TCAGAAGGCAATGA-CCATGAAGGAGGACTACACGGAAATTAATTCTACCCAGACAGTTT 1094
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 TCAGAAGGCAA-CATCCATGAAGGAGGACTACACGGAAATTAATTCTACCCAGACAGTTT 1007
Query 1095 CTGAGCTGAAGGACTTTGTTAAGAAGCTTAACTCACTACCAGAGATGACAAGGCACATAC 1154
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1008 CTGAGCTAAAGGACTTTGTTAAGAAGCTTAACTCTCTACCAGAGATGACAAGGCACATAC 1067
Query 1155 ATCTTGCCCAGCACCTAACGACGTTCACATCCAAGCAATCATTTAATTCTCAACTTGATA 1214
|||||||||||||||| || |||||||||||||||||||||||| ||| ||||||||||
Sbjct 1068 ATCTTGCCCAGCACCTGACAACGTTCACATCCAAGCAATCATTTCTTTCGCAACTTGATA 1127
Query 1215 TGGAACAAACACTTGTTGAGGCAGAAAATTATGACATATGCTATGAGTACATAGAAGAGA 1274
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1128 TGGAACAAACACTTGTTGAGGCAGAAAGTTATGACATATGCTATGAGTACATAGAAGAGA 1187
Query 1275 TGATCCATAAACAGGAGCCTCTCACTAATGTCTTACGTCTATTAGTCTTATTTTCTGTTA 1334
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 TGATCCATAAACAGGAGCATCTCACTAATGTCTTACGTCTATTAGTCTTATTTTCTGTTA 1247
Query 1335 CAAACTCAGGGTTACCGAAGAAACAATTTGATTATATAAGAATGGAACTACTCCACAGTT 1394
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1248 CAAACTCAGGGTTACCAAAGAAGCAATTTGATTATATAAGAATGGAACTACTCCACAGTT 1307
Query 1395 ATGGGTTTGAGCATGTGGTTACACTGAACAACTTGGAAAAAGCAGGATTGTTGAAGAAGC 1454
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 ATGGGTTTGAGCATGTGGTCACACTGAACAACTTGGAAAAAGCAGGATTGTTGAAGAAGC 1367
Query 1455 AGGAGTTTAAAAGCAACTGGCTGACAGTGAAACGGACACTGAAACTTATTGTCGAAGACA 1514
|||||||||||||||||||||||||||||||||| |||||| ||||||| || |||||||
Sbjct 1368 AGGAGTTTAAAAGCAACTGGCTGACAGTGAAACGTACACTGCAACTTATCGTAGAAGACA 1427
Query 1515 CTGATACGTCTAGGCCTAACGATATCGCTTATGTCTATTCGGGATATGCTCCTCTTAGCA 1574
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1428 CTGATACGTCTAGGCCTAACGATATCGCTTATGTCTATTCTGGATATGCTCCTCTAAGCA 1487
Query 1575 TTCGTCTTATCCAACAAGCTATTCATTCTGGATGGCGTCCTATGGAAGACATTTTGAAGC 1634
|||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||
Sbjct 1488 TTCGTCTTATCCAACAAGCTATTCATTCGGGATGGCGTCCTGTGGAGGACATTTTGAAGC 1547
Query 1635 TGTTACCAGGACCCCATCTGGAGACTAAAAGAAGTGGATTCCCAAGTAGTCCATCAGTTG 1694
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1548 TGTTACCAGGACCCCATCTGGAGACTAAAAGAAGTGGATTCCCAAGCAGTCCATCAGTTG 1607
Query 1695 ATTCATTGCACGGAGCTTCAAATGGGGTTGCTGATGGAAGACGCTCAATTGTTCTTGTTG 1754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 ATTCATTGCACGGAGCTTCAAATGGGGTTGCTGATGGAAGACGCTCAATTGTTCTTGTTG 1667
Query 1755 TCTTCATTGGAGGTGTAACATTTGCTGAAATCTCTGCTTTACGGTATCTCGCCTCTAAGG 1814
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 TCTTCATTGGTGGTGTAACATTTGCTGAAATCTCTGCTTTACGGTATCTCGCCTCTAAGG 1727
Query 1815 AAGGAATGGCTTATGATTTGATTGTTGCCACAACAAAAATCGTCAACGGCGCAACGTTGA 1874
||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1728 AAGAAATGGCTTATGATTTGATTATTGCCACAACAAAAATCGTCAATGGCGCAACGTTGA 1787
Query 1875 TAGAAACATTCATGGAAAAACTAGGCTGATCCGTAAACTGAGCGTTATGTT-CAtctttt 1933
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct 1788 TAGAAACATTCATGGAAAAACTAGGCTGATCCGTAAACAGAGCGTTATGTTTCATCTAT- 1846
Query 1934 ctctttcgagtgtgttt-attaattcatttttt-gtatgtctttgtttatttttctGGAT 1991
||||||| ||||||||| ||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1847 CTCTTTCCAGTGTGTTTTATTTGTTCATTTTTTTGTATGTCTTTGTTTATTTTTCTGGAT 1906
Query 1992 CATTGTGGTTGCAGAGTGAATGGTAT 2017
| ||||||||||||||||||||||||
Sbjct 1907 CTTTGTGGTTGCAGAGTGAATGGTAT 1932
Score = 1452 bits (786), Expect = 0.0
Identities = 856/890 (96%), Gaps = 4/890 (0%)
Strand=Plus/Plus
Query 40 AAACGGAGAAAGGTCGATCATCTCTTGATCATCGTCCATGGCGCAGATCCCCAGCTTGGA 99
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1 AAACGGAGAAAGGTCGATCATCTGTTGTTCATCGTCCATGGCGCAGATCCCCAGCTTGGA 60
Query 100 GAATGCTCCTCTCAATCTGAAATCCATTAGGGACAAGTCTGAGAGGGAGCTCGTAAACTT 159
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAATGCTCCTCTCAATCTCAAATCCATTAGGGACAAGTCTGAGAGGGAGCTCGTAAACTT 120
Query 160 GCTTAAAGACGTTCGTGGAACTAAGTGTTTGGTTATTGATCCAAAGCTCAGTGGTTCAGT 219
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTTAAAGACATTCGTGGAACTAAGTGTTTGGTTATTGATCCAAAGCTCAGTGGTTCAGT 180
Query 220 CTCATTGATCATCCCGACCTCTAAGCTTAAGGAACTTGGTTTGGAGTTACGACATCTTAC 279
|||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 CTCATTGATCATCCAGACGTCTAAGCTGAAGGAACTTGGTTTGGAGTTACGACATCTTAC 240
Query 280 TGCGGAACCAGTTCAGACTGAATGCACAAAAGTGGTTTATCTTGTTCGCTCTCAACTTAG 339
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 241 TGCGGAACCAGTTCAGACTGAATGCACAAAAGTGATTTATCTTGTTCGCTCTCAACTCA- 299
Query 340 C-TTTATGAAATTCATAGCGTCTCACATTCAGAATGATATTGCAAAAGCGATTCAGAGAG 398
| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 300 CTTTTATGAAATTCATAGCTTCTCACATTCAGAATGATATTTCAAAAGCGATTCAGAGAG 359
Query 399 ACTACTATGTTTACTTTGTTCCTCGTAGGTCTGTTGCGTGTGAGAAGATTCTTGAGCAAG 458
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 360 ACTACTATGTTTACTTTGTTCCTCGTAGGTCAGTTGCGTGTGAGAAGATTCTTGAGCAAG 419
Query 459 AAAAAGTGCATAACCTGGTTACAGTGAAAGAGTTT-CCCTTGTATATGGTTCCACTAGAT 517
|||||||||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||
Sbjct 420 AAAAAGTGCATAACCTGGTTACTGTGAAGGAGTTTACCC-TGTATATGGTTCCACTAGAT 478
Query 518 GAGGATGTTATTTCATTTGAGCTCGAGCTCTCTGAAAAGGATTGCCTTGTGGATGGTGAT 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GAGGATGTTATTTCATTTGAGCTCGAGCTCTCTGAAAAGGATTGCCTTGTGGATGGTGAT 538
Query 578 GTTAGCTCCCTTTGGCATATCGCAAAAGCCATACATGAACTTGAGTTCTCTTTTGGAGTT 637
|||||||| ||||||||| ||||||||||||| |||||||||||||| ||||||||||||
Sbjct 539 GTTAGCTCACTTTGGCATGTCGCAAAAGCCATCCATGAACTTGAGTTTTCTTTTGGAGTT 598
Query 638 ATATCAAAAATGAGGGCAAAGGGCAAAGCATCAGTTCGTGTTGCAGACATTCTAAACCGC 697
||||| ||| ||||||| |||||||||||||||||||||||||| || || |||||||||
Sbjct 599 ATATCGAAAGTGAGGGCCAAGGGCAAAGCATCAGTTCGTGTTGCTGATATACTAAACCGC 658
Query 698 ATGCAAGTGGAGGAACCTGTCAATTCGAATGATGTGGGAAGGCCTGAAGTGGATACACTC 757
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 659 ATGCAAGTGGAGGAACCTGTCAATTCAAATGATGTGGGAAGGCCTGAAGTGGATACACTC 718
Query 758 ATTCTATTGGATAGAGAGGTTGACATGGTTACTCCTATGTGTTCCCAGTTAACTTATGAG 817
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ATTCTATTGGATAGAGAAGTTGACATGGTTACTCCTATGTGTTCCCAGTTAACTTATGAG 778
Query 818 GGACTAATAGACGAGATTTTGCATATCAGCAATGGAGCTGTCGAGGTCGACTCATCTGTG 877
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GGACTGATAGACGAGTTTTTGCATATCAGCAATGGAGCTGTCGAGGTCGACTCATCTGTG 838
Query 878 ATGGGTGCTCAGCAGGAGGGAAAAAAGATGAAAGTTCCCCTTAATTCAAG 927
|||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 839 ATGGGTGCTCAGCAAGAGGGAAAAAAGATGAAAGTTCCCCTTAATTCAAG 888
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 2045 TTGAGATACAGCGTGATTATACAAATTCAAT 2075
|||||||||||||||||||||||||||||||
Sbjct 1932 TTGAGATACAGCGTGATTATACAAATTCAAT 1962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78961077885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5