BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54880.1
Length=815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485901 jgi|Araly1|485901|fgenesh2_kg.5__1893__AT3G54880.1 1236 0.0
> Ahg485901 jgi|Araly1|485901|fgenesh2_kg.5__1893__AT3G54880.1
Length=784
Score = 1236 bits (669), Expect = 0.0
Identities = 752/791 (95%), Gaps = 10/791 (1%)
Strand=Plus/Plus
Query 1 GTTGATTTTTCATTGCCTACTCAAGATCTAAAATTTTCCTTTACATATAAAACCTAAAAG 60
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 GTTGATTTTTCATTGACTACTCAAGATCTAAAATTTTCTTTTACATATAAAACCTAAAAG 60
Query 61 AAAACATATAATGCAGTTTCAATCCCTCTACCAAATTTTCTGTTGATACTTTCCTCATTA 120
||||||||||| |||||||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct 61 AAAACATATAAAGCAGTTTCAATCCCTCCACCAAATTTTCTGCTGATACTTTCCCCATTA 120
Query 121 AGGGTTTTCCACATAGCTGATTGATGAAAATGTCAAT-G-AGCTTGTGTGGAAACCTTTG 178
||||||||||||| ||||| |||||| |||| || | | ||||| ||||||||||||||
Sbjct 121 AGGGTTTTCCACA-AGCTGGTTGATG-AAATTTCTTTAGCAGCTTTTGTGGAAACCTTTG 178
Query 179 ATGtttttttGTATGTGGATGTGAATTGGTAT-ACTCGGGTTTATTCGTAAAGGAATGAT 237
||| |||||||||||||||||||||||||| | ||||||||||||| |||||||||||
Sbjct 179 ATG---TTTTGTATGTGGATGTGAATTGGTATAAATCGGGTTTATTCGAAAAGGAATGAT 235
Query 238 CATTCGATTGAATAAGAATGGAGCTTTATACTGCAAATTGTCTGTCCACCGAAAACAAAC 297
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CATTCGATCGAATAAGAATGGAGCTTTATACTGCAAATTGTCTGTCCACCGAAAACAAAC 295
Query 298 CTACTCTTGAGCTTTCAAAACTAGTCAAAGACGAGAAAAGCTCGGTGAAAACGAACAGCG 357
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 296 CTACTCTTGAGCTTTCAAAATTAGTCAAAGAAGAGAAAAGCTCGGTGAAAACGAACAGCG 355
Query 358 AAAACACCCTTACACTTGTGAATCATGGTGCAAAGATGTGGCAAGAGAACAGGGAAAAAT 417
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 AAAACACCTTTACACTTGTGAATCATGGTGCAAAGATGTGGCAAGAGAACAGGGAAAAAT 415
Query 418 GGGTGGGAGATCAATCTCGACAAAGAAAAAACACTGCAAAGGATCAGATTATAAGCTGGT 477
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 416 GGGTGGGAGATCAATCTGGACAAAGAAAAAACACTGCAAAGGATCAGATAATAAGCTGGT 475
Query 478 CTACTACATATGAAGATCTTCTCTCAACTCATGAACCTTTCTCTGAGTCGATTCCTTTAC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CTACTACATATGAAGATCTTCTCTCAACTCATGAACCTTTCTCTGAGTCGATTCCTTTAC 535
Query 538 CCGAGATGGTGGACTTTCTTGTCGATATTTGGTACGATGAAGGCCTTTACGATTAGAAGA 597
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CCGAGATGGTGGACTTTCTGGTCGATATTTGGTACGATGAAGGCCTTTACGATTAGAAGA 595
Query 598 ATCTAACAATGCCACGAACTAGATTGACAAAGAACAAAGGAGAGATTCAATTATGGTATG 657
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 596 ATCTAACAATGCCACGAACTAGATTGACAAAGAACAAAGGACAAATTCAATTATGGTATG 655
Query 658 AAATTAAATCTTTAGGAGTTGTGAAAACATTTACAGATATGATGAACTATCTATTTGTTA 717
|| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 656 AAGTTAAATCTTTAGGAGTTGTGAAAACATCTACAGATATGATGAACTATCTACTTGTTA 715
Query 718 TATCCATATACTGTATCATGAGAAAAAGACTGACTACTCATATACTCCACATCTTTAACA 777
||||||||||||||||| |||||||||||||||| ||||| |||||||| |||||||||
Sbjct 716 TATCCATATACTGTATCTTGAGAAAAAGACTGACCACTCACATACTCCA--TCTTTAACA 773
Query 778 TTTATATGATT 788
||||||| |||
Sbjct 774 TTTATATAATT 784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30117104430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5