BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54890.1
Length=1109
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485905 jgi|Araly1|485905|fgenesh2_kg.5__1897__AT3G54890.1 1591 0.0
Ahg936994 jgi|Araly1|936994|scaffold_501185.1 167 2e-40
> Ahg485905 jgi|Araly1|485905|fgenesh2_kg.5__1897__AT3G54890.1
Length=1022
Score = 1591 bits (861), Expect = 0.0
Identities = 991/1049 (94%), Gaps = 28/1049 (3%)
Strand=Plus/Plus
Query 1 ACACGTGGCCCAATGAAAAAGCCACGCAGGCTCTGTATAGCCAATTGCAATCTGGTTTTA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ACACGTGGCCCAATGAAAAAGCCACGCAGGCTCTGTATAGCCAATTGCAATCTGATTTTA 60
Query 61 GATTCTCATCTCACAAATCTTACTTATACGATCAGTCTCCCACATTCACACTTCCACCAA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 GATTCTCATCTCACAAATCTTACTTATACGATCAGTCTCCCACATTCACACTTCCACC-A 119
Query 121 ACACCTCTCGTCCACATCTTTCTCCTTTGGTGGCAAACACAACGACAGATAGAGAGAAAC 180
| | ||| | ||| | || | |||||||||||||||||||||||
Sbjct 120 A-A---------CAC--C--TCT-C----GT--C---CACAACGACAGATAGAGAGAAAC 155
Query 181 GATGGCGTCGAACTCGCTTATGAGCTGTGGCATAGCCGCCGTGTACCCTTCGCTTCTCTC 240
||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 156 GATGGCGTCGAACTCGCTTATGAGCTGCGGCATCGCCGCCGTTTACCCTTCGCTTCTCTC 215
Query 241 TTCTTCCAAGTCTAAATTCGTATCCGCCGGAGTTCCACTCCCAAACGCCGGGAATGTTGG 300
||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 216 TTCTTCCAAGTCTAAATTCGTTTCCGCCGGAGTTCCTCTCCCTAACGCCGGGAATGTTGG 275
Query 301 TCGTATCAGAATGGCTGCTCACTGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGG 360
||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 276 CCGTATCAGAATGGCTGCTCACTGGATGCCCGGGGAGCCACGACCAGCTTACCTCGACGG 335
Query 361 TTCTGCTCCTGGTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCT 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 336 TTCTGCTCCTGGTGACTTTGGATTTGACCCACTTGGACTTGGAGAAGTTCCAGAGAACCT 395
Query 421 TGAGAGATACAAAGAGTCAGAGCTCATCCACTGTAGATGGGCTATGCTCGCTGTTCCTGG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 TGAGAGATACAAAGAGTCAGAGCTCATCCACTGTAGATGGGCTATGCTCGCTGTTCCTGG 455
Query 481 GATTTTGGTACCAGAAGCATTAGGATATGGAAACTGGGTTAAGGCTCAGGAATGGGCAGC 540
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 456 GATTTTGGTACCAGAAGCATTAGGATATGGAAACTGGGTGAAGGCTCAGGAATGGGCAGC 515
Query 541 ACTACCAGGGGGTCAAGCCACTTACTTGGGAAACCCAGTCCCGTGGGGTACTTTGCCCAC 600
| |||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 516 AGTACCAGGGGGTCAAGCAACTTACTTGGGGAACCCGGTCCCGTGGGGTACTTTGCCCAC 575
Query 601 AATCTTGGCCATTGAGTTCTTAGCCATTGCATTTGTTGAGCACCAGAGAAGTATGGAGAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 AATCTTGGCCATTGAGTTCTTAGCCATTGCATTTGTTGAGCACCAGAGAAGTATGGAGAA 635
Query 661 AGACCCTGAGAAGAAGAAGTACCCGGGAGGCGCATTTGACCCTCTTGGATACTCGAAGGA 720
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 636 AGACCCCGAGAAGAAGAAGTACCCTGGAGGCGCATTTGACCCTCTTGGATACTCAAAGGA 695
Query 721 CCCCAAGAAGCTCGAGGAATTGAAAGTTAAAGAGATCAAGAACGGGCGGCTTGCGCTGTT 780
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 696 CCCCAAGAAGCTTGAGGAATTGAAAGTTAAGGAGATCAAGAACGGGCGGCTTGCACTGTT 755
Query 781 GGCGTTTGTAGGATTCTGTGTGCAACAGTCGGCTTACCCGGGGACAGGACCATTGGAGAA 840
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 756 GGCGTTTGTAGGATTCTGTGTTCAACAGTCGGCTTACCCGGGGACAGGACCATTGGAGAA 815
Query 841 CTTGGCAACTCACTTGGCGGATCCATGGCACAACAACATTGGCGATATTGTTATCCCTTT 900
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 CCTGGCAACTCACTTGGCGGATCCATGGCACAACAACATTGGCGATATTGTTATCCCTTT 875
Query 901 CAACTAATGAATGTAAAAATAGAAATATGTGTACCTTATGAGCTTTATGTGTATCAAAAA 960
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 876 CAACTAATGAATGTAAAAATAGAAATATGT--ACCTTATGAGCTTTATGTGTATCAAAAA 933
Query 961 CACTGTGTAATGAAAGACAGATTTGTGAATTCCTGTAATTTGTCTTGGTGATCGAAT-GC 1019
||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | ||
Sbjct 934 CACTGTGTAATGAAAGACAGATTTGTGAAAACCTGTATTTTGTCTTGGTGATCGATTTGC 993
Query 1020 TCGTGTGAGCTTGAATTCTAAGTGATGAA 1048
|||||||||||||||||||||||||||||
Sbjct 994 TCGTGTGAGCTTGAATTCTAAGTGATGAA 1022
> Ahg936994 jgi|Araly1|936994|scaffold_501185.1
Length=334
Score = 167 bits (90), Expect = 2e-40
Identities = 107/115 (93%), Gaps = 1/115 (1%)
Strand=Plus/Minus
Query 935 CTTATGAGCTTTATGTGTATCAAAAACACTGTGTAATGAAAGACAGATTTGTGAATTCCT 994
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||
Sbjct 252 CTTATGAGCTTTATGTGTATCAAAAACAGTGTGTAATGAAAGTCAGATTTGTGAAAACCT 193
Query 995 GTAATTTGTCTTGGTGATCGA-ATGCTCGTGTGAGCTTGAATTCTAAGTGATGAA 1048
||| |||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 192 GTATTTTGTCTTGGTGCTCGATTTGCTCGTGTGAGCTTGAATTCTAAGTGATGAA 138
Score = 145 bits (78), Expect = 8e-34
Identities = 82/84 (98%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 389 CCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGAGAGATACAAAGAGTCAGAGCTCATC 448
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 334 CCACTTGGACTTGGAGAAGTTCCAGAGAACCTTGAGAGATACAAAGAATCAGAGCTCATC 275
Query 449 CACTGTAGATGGGCTATGCTCGCT 472
||||||||||||||||||||||||
Sbjct 274 CACTGTAGATGGGCTATGCTCGCT 251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41325242028
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5