BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54900.1
Length=806
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938418 jgi|Araly1|938418|scaffold_502609.1 815 0.0
Ahg930629 jgi|Araly1|930629|scaffold_303086.1 588 2e-167
Ahg336548 jgi|Araly1|336548|fgenesh1_pg.C_scaffold_1003113 403 9e-112
> Ahg938418 jgi|Araly1|938418|scaffold_502609.1
Length=556
Score = 815 bits (441), Expect = 0.0
Identities = 511/544 (94%), Gaps = 7/544 (1%)
Strand=Plus/Plus
Query 20 AAAATGGCTCTCCGATCTGTCAAAACGCCGACCTTGATAACTTCGGTCGCCGTCGTCTCC 79
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 18 AAAATGGCTCTCCGATCTGTCAAAACGCCGACCTTGATAACTCCGGTCACCGTCGTCTCC 77
Query 80 TCCTCCGTTACCAACAAGCCTCACTCTATCAGATTCTCTCTTAAACCAACGTCGGCACTC 139
|||||||| | ||||||||| |||||||| ||||||||||||||||||||| ||||||||
Sbjct 78 TCCTCCGTAATCAACAAGCCACACTCTATAAGATTCTCTCTTAAACCAACGGCGGCACTC 137
Query 140 GTCGTCCATAACCATCAGCTATCGTTCTACGGTTCGAATCTCAAGCTGAAACCAACTAAA 199
| ||| || |||| ||||| |||||||||| | | ||||||||| |||||||| |||
Sbjct 138 GCCGTTCACAACCGTCAGCCATCGTTCTAC-G---G--TCTCAAGCTCAAACCAACAAAA 191
Query 200 TTCCGATGCTCAGCGTCGGCTCTTACGCCGCAACTTAAAGACACGCTGGAGAAACTGGTG 259
||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 192 TTCCGATGCTCTGCGTCGGCGCTTACGCCGCAACTTAAAGATACGCTGGAGAAACTGGTG 251
Query 260 AATTCGGAGAAAGTGGTTCTGTTTATGAAAGGAACGAGAGACTTCCCGATGTGTGGATTC 319
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 252 AATTCGGAGAAAGTGGTTCTGTTCATGAAAGGAACGAGAGATTTCCCGATGTGTGGATTC 311
Query 320 TCCAACACTGTGGTTCAGATTTTGAAGAATCTGAATGTTCCTTTCGAAGATGTGAATATT 379
|||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||
Sbjct 312 TCCAACACTGTGGTTCAGATCTTGAAGAATTTGAATGTTCCTTTTGAAGATGTGAATATT 371
Query 380 CTGGAGAATGAGATGTTGAGGCAAGGACTTAAAGAGTATTCGAATTGGCCGACGTTTCCT 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 CTGGAGAATGAGATGTTGAGGCAAGGACTTAAAGAGTATTCGAATTGGCCGACGTTTCCT 431
Query 440 CAGCTTTATATCGGCGGTGAGTTTTTCGGTGGTTGTGATATTACTCTTGAGGCGTTTAAG 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 CAGCTTTATATCGGCGGTGAGTTTTTCGGTGGTTGTGATATTACTCTTGAGGCGTTTAAG 491
Query 500 ACTGGAGAATTGCAGGAAGAGGTGGAGAAAGCTATGTGCTCTTGATCCTGATTTCAATAC 559
| ||| |||||||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct 492 AGTGGGGAATTGCAGGAAGAGGTGGAGAAAGCTATGTGCTCTTGATTCTGGTT-CAATAC 550
Query 560 TTGG 563
||||
Sbjct 551 TTGG 554
> Ahg930629 jgi|Araly1|930629|scaffold_303086.1
Length=442
Score = 588 bits (318), Expect = 2e-167
Identities = 378/406 (93%), Gaps = 8/406 (2%)
Strand=Plus/Plus
Query 20 AAAATGGCTCTCCGATCTGTCAAAACGCCGACCTTGATAACTTCGGTCGCCGTCGTCTCC 79
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 18 AAAATGGCTCTCCGATCTGTCAAAACGCCGACCTTGATAACTCCGGTCACCGTCGTCTCC 77
Query 80 TCCTCCGTTACCAACAAGCCTCACTCTATCAGATTCTCTCTTAAACCAAC-GTCGGCACT 138
|||||||||| |||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct 78 TCCTCCGTTATCAACAAGCCTCAATCTATCAGATTCTCTCTTAAACCAACAG-CGGCACT 136
Query 139 CGTCGTCCATAACCATCAGCTATCGTTCTACGGTTCGAATCTCAAGCTGAAACCAACTAA 198
|| ||| || |||| ||||| ||||||||||||| | || ||||| |||||||| ||
Sbjct 137 CGCCGTTCACAACCGTCAGCCATCGTTCTACGGT-C---TC--AAGCTCAAACCAACAAA 190
Query 199 ATTCCGATGCTCAGCGTCGGCTCTTACGCCGCAACTTAAAGACACGCTGGAGAAACTGGT 258
|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 191 ATTCCGATGCTCTGCGTCGGCGCTTACGCCGCAACTTAAAGATACGCTGGAGAAACTGGT 250
Query 259 GAATTCGGAGAAAGTGGTTCTGTTTATGAAAGGAACGAGAGACTTCCCGATGTGTGGATT 318
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 251 GAATTCGGAGAAAGTGGTTCTGTTCATGAAAGGAACGAGAGATTTCCCGATGTGTGGATT 310
Query 319 CTCCAACACTGTGGTTCAGATTTTGAAGAATCTGAATGTTCCTTTCGAAGATGTGAATAT 378
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 311 CTCCAACACTGTGGTTCAGATCTTGAAGAATTTGAATGTTCCTTTCGAAGATGTGAATAT 370
Query 379 TCTGGAGAATGAGATGTTGAGGCAAGGACTTAAAGAGTATTCGAAT 424
||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 371 TCTGGAGAATGAGATCTTGAGGCAAGGACTTAAAGAGTATTCAAAT 416
> Ahg336548 jgi|Araly1|336548|fgenesh1_pg.C_scaffold_1003113
Length=339
Score = 403 bits (218), Expect = 9e-112
Identities = 269/293 (92%), Gaps = 6/293 (2%)
Strand=Plus/Plus
Query 132 CGGCACTCGTCGTCCATAACCATCAGCTATCGTTCTACGGTTCGAATCTCAAGCTGAAAC 191
||||||||| ||| || |||| ||||| |||||||||| | | ||||| ||| ||||
Sbjct 47 CGGCACTCGCCGTTCACAACCGTCAGCCATCGTTCTAC-G---G--TCTCAGGCTCAAAC 100
Query 192 CAACTAAATTCCGATGCTCAGCGTCGGCTCTTACGCCGCAACTTAAAGACACGCTGGAGA 251
|||| |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 101 CAACAAAATTCCGATGCTCTGCGTCGGCGCTTACGCCGCAACTTAAAGATACGCTGGAGA 160
Query 252 AACTGGTGAATTCGGAGAAAGTGGTTCTGTTTATGAAAGGAACGAGAGACTTCCCGATGT 311
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 161 AACTGGTGAATTCGGAGAAAGTGGTTCTGTTCATGAAAGGAACGAGAGATTTCCCGATGT 220
Query 312 GTGGATTCTCCAACACTGTGGTTCAGATTTTGAAGAATCTGAATGTTCCTTTCGAAGATG 371
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 221 GTGGATTCTCCAACACTGTGGTTCAGATCGTGAAGAATTTGAATGTTCCTTTCGAAGATG 280
Query 372 TGAATATTCTGGAGAATGAGATGTTGAGGCAAGGACTTAAAGAGTATTCGAAT 424
|||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 281 TGAATATTCTGGAGAATGAGATCTTGAGGCAAGGACTTAAAGAGTATTCAAAT 333
Score = 67.6 bits (36), Expect = 1e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 23 ATGGCTCTCCGATCTGTCAAAACGCCGACCTTGATA 58
||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTCTCCGATCTGTCAAAACGCCGACCTTGATA 36
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29773998177
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5