BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54920.1
Length=1840
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485907 jgi|Araly1|485907|fgenesh2_kg.5__1899__AT3G54920.1 2665 0.0
> Ahg485907 jgi|Araly1|485907|fgenesh2_kg.5__1899__AT3G54920.1
Length=1788
Score = 2665 bits (1443), Expect = 0.0
Identities = 1709/1829 (93%), Gaps = 51/1829 (3%)
Strand=Plus/Plus
Query 1 TTAGCCCTGTTTCCAGCAagagggcagagaagcagaga--gagagagagtgtga--gaga 56
|||||||||||||||||||||||||||||||||||||| ||||||||| | || ||||
Sbjct 1 TTAGCCCTGTTTCCAGCAAGAGGGCAGAGAAGCAGAGAGTGAGAGAGAGAGAGAGTGAGA 60
Query 57 gaAAG-CAGcttcttcttcttctcctcctcttctcccttatgtggatttcaaatccttct 115
|| || ||| ||||||| | | || |||||||||| ||||||||| |||||||||||
Sbjct 61 GAGAGAAAGCAGCTTCTTC-T-T-CT--TCTTCTCCCTCATGTGGATTCCAAATCCTTCT 115
Query 116 ctgctactctctcttcACATTTCTCTACCAACATTCTTCTTCTGACACTCAACACACACA 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 CTGCTACTCTCTCTTCACATTTCTCTACCAACATTCTTCTTCTGACACTCAACACACACA 175
Query 176 CTGCAACTTCCACAGCTAAATCTAGCAACACCAAGTCAAAATCCGCCACTAACGATGCTT 235
||||||||||||| ||||| || ||||||||||||||||||||||||| |||||||||||
Sbjct 176 CTGCAACTTCCACGGCTAACTCAAGCAACACCAAGTCAAAATCCGCCAGTAACGATGCTT 235
Query 236 CTTCAAAACTTCTCCAACACCATTTTCCTTCTCTGCCTCTTCTTCACACTCCTCTCCGCC 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 236 CTTCAAAACTTCTCCAACACCATTTTCCTTCTCTGCCTCTTCTTCACACTCCTCGCCGCC 295
Query 296 ACTAAACCCCTAAATCTCACTCTCCCTCACCAACACCCTTCCCCTGATTCCGTCGCTCTC 355
||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 296 ACTAAACCCTTAAATCTCACGCTCCCTCACCAACATCCTTCCCCTGATTCCGTCGCTCTC 355
Query 356 CATGTCATCAGGAGTGTAAATGAATCTCTTGCAAGAAGACAACTAAGCTCACcatcatca 415
||||||||||||||||| |||||||||||||||||||||||||| || | ||
Sbjct 356 CATGTCATCAGGAGTGTCAATGAATCTCTTGCAAGAAGACAACT-AG-------GC-TCG 406
Query 416 tcctcatcatcatcatcctcctcatcatcatcctcTTGCCGTACCGGAAACCCAATCGAC 475
||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||||
Sbjct 407 TCCTCATCATCATCA---TCATCATCATCCTCCTCTTGCCGAACCGGAAACCCAATCGAC 463
Query 476 GATTGCTGGAGATGCAGCGACGCAGACTGGTCAACAAACCGACAAAGACTAGCAGACTGT 535
|||||||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 464 GATTGCTGGAAATGCAGCGACTCAGACTGGTCATCAAACCGACAAAGACTAGCCGACTGT 523
Query 536 TCAATCGGCTTCGGACACGGCACACTCGGAGGCAAAAACGGCAAGATCTACGTCGTAACT 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 524 TCAATCGGCTTCGGACACGGCACACTCGGAGGCAAAAACGGCAAGATCTACGTCGTTACA 583
Query 596 GACTCATCCGACAACAACCCAACAAACCCAACACCAGGAACACTCCGTTACGGCGTAATC 655
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 584 GACTCATCCGACAGCAACCCAACAAACCCGACACCAGGAACACTCCGTTACGGCGTAATC 643
Query 656 CAAGAAGAGCCACTCTGGATCGTCTTCTCTTCAAACATGCTCATCAGACTAAAACAAGAA 715
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 644 CAAGAAGAGCCACTCTGGATCGTCTTCTCCTCAAACATGCTCATCAGATTAAAACAAGAA 703
Query 716 CTCATCATCAACAGCTACAAAACCTTAGATGGTCGTGGCTCAGCCGTTCACATTACCGGA 775
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 704 CTCATCATCAACAGCTACAAAACCTTAGACGGTCGTGGCTCAGCCGTACACATAACCGGA 763
Query 776 AACGGTTGCTTAACTCTCCAATACGTTCAACACATCATCATCCACAACCTCCATATCTAT 835
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 764 GACGGTTGCTTAACTCTCCAATACGTTCAACACATCATCATCCACAACCTCCACATCTAT 823
Query 836 GACTGTAAACCTTCAGCTGGATTCGAGAAACGTGGTAGATCCGATGGAGATGGGATCTCG 895
||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 824 GACTGCAAACCTTCAGCTGGATTCGAAAAACGAGGTAGATCCGATGGAGATGGGATCTCA 883
Query 896 ATCTTCGGATCTCAGAAGATCTGGGTTGATCATTGTTCAATGAGTCATTGCACCGACGGG 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 ATCTTCGGATCTCAGAAGATCTGGGTTGATCATTGTTCAATGAGTCATTGCACCGACGGG 943
Query 956 CTAATTGATGCTGTGATGGGTTCTACAGCTATAACTATATCTAACAATTACTTCACCCAC 1015
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 944 CTTATTGATGCTGTGATGGGTTCAACAGCTATAACTATATCTAACAATTACTTCACGCAT 1003
Query 1016 CACGACGAGGTTATGTTGTTGGGTCATGATGATAACTATGCTCCTGATACGGGGATGCAA 1075
|||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1004 CACGACGAAGTGATGTTGTTGGGTCATGATGATAACTATGCGCCTGATACGGGGATGCAA 1063
Query 1076 GTGACGATAGCGTTTAATCATTTCGGACAAGGGCTTGTTCAGAGGATGCCTAGGTGTCGG 1135
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1064 GTGACCATAGCTTTTAATCATTTTGGACAAGGGCTTGTTCAGAGGATGCCTAGATGTCGG 1123
Query 1136 AGAGGTTACATTCATGTAGTGAATAATGATTTCACTGAGTGGAAAATGTATGCTATTGGT 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 AGAGGTTACATTCATGTAGTGAATAATGATTTCACTGAGTGGAAAATGTATGCTATTGGT 1183
Query 1196 GGTAGTGGTAATCCCACCATTAACAGTCAAGGAAATCGTTACTCTGCTCCTTCTGATCCT 1255
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1184 GGTAGTGGTAATCCCACCATTAACAGTCAAGGAAATCGTTACGCTGCTCCTTCTGATCCT 1243
Query 1256 AGCGCCAAAGAGGTGACGAAGCGAGTGGACTCGAAGGACGATGGTGAATGGTCGAATTGG 1315
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1244 AGCGCCAAAGAGGTGACGAAGCGAGTGGACTCGAAGGACGATGGTGAATGGGCGAATTGG 1303
Query 1316 AATTGGAGAACAGAAGGGGATTTGATGGAGAATGGAGCTTTCTTTGTGGCCTCTGGTGAA 1375
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1304 AATTGGAGAACAGAAGGAGATTTGATGGAGAATGGAGCTTTCTTTGTGGCTTCTGGTGAA 1363
Query 1376 GGAATGAGCTCAATGTACTCTAAAGCTTCTAGTGTTGACCCTAAAGCTGCTTCTCTCGTA 1435
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 GGAATGAGCTCAATGTACTCTAAAGCTTCTAGTGTTGACCCTAAAGCTGCTTCTCTCGTC 1423
Query 1436 GACCAGCTCACTCGAAACGCTGGCGTTTTTGGCGGTCCCAGGGATGATCAAGGTCAGAGT 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 GACCAGCTCACTCGAAACGCTGGCGTTTTTGGCGGTCCCAGGGATGATCAAGGTCAGAGT 1483
Query 1496 GGCAATTCTTACTCTCCTTATGGAGGCGACGGCGGTGGCGGTGGGAGCAGCGGTGGGAGC 1555
||||||||||||||||| |||||||||||||||||||| || | | ||| | |
Sbjct 1484 GGCAATTCTTACTCTCCGTATGGAGGCGACGGCGGTGGAGG-G--A-------TGG-A-C 1531
Query 1556 AGCGGTGGAGGGATGGACGTTATGGGAGGTACGACGAGAGGAAGCAGCAGCAGCAGCGGC 1615
| ||| | ||| | ||||| ||||||||||||||||||||||||||| | | |
Sbjct 1532 -GATATGG-G---TGG---T-ATGGGCGGTACGACGAGAGGAAGCAGCAGCAGC-G-G-C 1579
Query 1616 GATGACAGCAATGTCTTCCAGATGATATTTGGAAGCGATGCACCGTCTCGGCCGCGTTTA 1675
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1580 GACGACAGCAATGTCTTCCAGATGATATTTGGAAGCGATGCACCGTCTCGGCCGCGATTA 1639
Query 1676 ACGTTATTGTTTTCTTTGTTAATGATTTCGGTTTTGTCGTTATCAACTCTATTATTGTG- 1734
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1640 ACGTTATTGTTTTCTTTGTTAAAGATTTCGGTTTTGTCATTATCAACTCTATTATTGTGG 1699
Query 1735 -AC--G-AATGGATAACAAATAGGATTTGGACCGTTCAATTGATTGGTTTTTGGTGTAAA 1790
| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1700 TAGAAGGAATGGATAGCAAATAGGATTTGGACCGTTCAATTGATTGGTTTTTGGTGTAAA 1759
Query 1791 GTGTGGCTCTCTCTCCATTATTTTCTTTA 1819
|||||||||||||||||||||||||||||
Sbjct 1760 GTGTGGCTCTCTCTCCATTATTTTCTTTA 1788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69095704430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5