BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54940.2
Length=1346
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485911 jgi|Araly1|485911|fgenesh2_kg.5__1903__AT3G54940.3 1930 0.0
> Ahg485911 jgi|Araly1|485911|fgenesh2_kg.5__1903__AT3G54940.3
Length=1236
Score = 1930 bits (1045), Expect = 0.0
Identities = 1174/1237 (95%), Gaps = 5/1237 (0%)
Strand=Plus/Plus
Query 12 TAAGGCCACCTCAAAACAAGACCCATCGATAACAGCGATCATGGTGGCTAAAGCCTTAGC 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TAAGGCCACCTCAAAACAAGACCCATCGATAACAGCGATCATGGTGGCTAAAGCCTTAGC 60
Query 72 ACAGCTGATAACATGCATCATCTTATTCTGCCACGTTGTAGCTTCCGTAGAAGACCTCAC 131
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 61 ACAGCTGATAACATGCATCATCTTCTTCTGCCACGTTGTAGCTTCCGTAGAGGACCTGAC 120
Query 132 CATACGCCAAGTCACGGCCGACAATCGGCGAATTCGCCCGAATCTTCTCGGGACTCACAC 191
|||||||||||||||||| ||| | |||||| | |||||||||||||| |||||||||||
Sbjct 121 CATACGCCAAGTCACGGCGGACGAGCGGCGAGTACGCCCGAATCTTCTTGGGACTCACAC 180
Query 192 AGAGAGTAAATTCCGGCTTTTCATGTCCGATTACGGCAAGAACTACTCCACGAGGGAGGA 251
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 CGAGAGTAAATTCCGGGTTTTCATGTCCGATTACGGCAAGAACTACTCGACGAGGGAGGA 240
Query 252 GTACATCCACCGCCTCGGAATATTTGCCAAAAACGTCCTTAAGGCCGCAGAGCACCAGAT 311
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 241 GTACATCCACCGCCTCGGAATATTTGCCAAAAACGTCCTCAAGGCGGCAGAGCACCAGAT 300
Query 312 GATGGACCCCTCCGCCGTCCACGGAGTCACACAGTTCTCTGACCTCACGGAAGAGGAGTT 371
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 301 GATGGACCCCACCGCCGTCCACGGAGTCACACAATTCTCTGACCTCACGGAAGAGGAGTT 360
Query 372 CAAGCGGATGTACACTGGAGTAGCCGATGTTGGCGGCAGCCGTGGCGGTACGGTTGGAGC 431
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 361 CAAGCGGATGTACACTGGAGTAGCCGATGTTGGCGGCAGCCGTGGCCATGCGGTTGGAGC 420
Query 432 GGAGGCACCTATGGTTGAGGTTGATGGATTGCCTGAAGATTTTGACTGGAGGGAGAAGGG 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 GGAGGCACCTATGGTTGAGGTTGATGGATTGCCTGAAGATTTTGACTGGAGGGAGAAAGG 480
Query 492 TGGAGTTACTGAGGTTAAGAATCAAGGTGCATGTGGATCGTGCTGGGCTTTTAGCACAAC 551
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGGAGTTACTGAGGTCAAGAATCAAGGTGCATGTGGATCGTGCTGGGCTTTTAGCACAAC 540
Query 552 GGGAGCAGCTGAAGGAGCCCATTTCGTCTCCACCGGGAAGCTCCTCAGTCTTAGCGAACA 611
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 541 AGGAGCAGCTGAAGGAGCCCATTTTGTCTCCACCGGGAAGCTCCTCAGTCTTAGCGAGCA 600
Query 612 ACAACTTGTCGATTGTGATCAAGCG-T--GCGATCCAAAGGACAAGAAAGCATGCGACAA 668
||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||
Sbjct 601 ACAACTTGTCGATTGTGATCAAGCGGTCTGCGATCCAAAGGACAAGAAAGCATGTGACAA 660
Query 669 TGGATGTGGCGGGGGACTGATGACAAATGCCTACGAGTATTTGATGGAGGCAGGAGGATT 728
||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 661 TGGATGTGGTGGGGGACTCATGACAAATGCCTATGAGTATTTGATGGAGGCAGGAGGATT 720
Query 729 AGAAGAAGAAAGATCATATCCTTACACTGGTAAACGAGGCCATTGCAAGTTTGATCCTGA 788
|||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 721 AGAAGAAGAAAGGTCATATCCTTACACCGGTAAACGAGGCCATTGCAAGTTCGATCCTGA 780
Query 789 GAAGGTTGCGGTAAGAGTACTGAACTTCACGACTATACCACTGGATGAGAACCAAATCGC 848
||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||
Sbjct 781 GAAGGTTGCGGTAAGAGTAGTGAACTTCACGACTATACCACTAGATGAGGACCAAATCGC 840
Query 849 AGCAAACTTAGTTCGGCATGGTCCCTTAGCAGTGGGATTAAACGCCGTGTTCATGCAAAC 908
|||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 841 AGCAAATTTAGTTCGACAGGGTCCCTTAGCAGTGGGATTAAACGCGGTGTTCATGCAAAC 900
Query 909 ATATATAGGAGGAGTGTCATGTCCGCTTATATGCAGCAAGCGAAACGTTAACCACGGAGT 968
||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| ||
Sbjct 901 GTATATAGGAGGAGTGTCGTGTCCGCTTATATGCAGCAAGAGAAAGGTTAACCACGGGGT 960
Query 969 ACTTCTTGTTGGGTACGGATCAAAAGGGTTTTCGATCTTGCGGCTTAGTAATAAACCTTA 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 961 ACTTCTTGTTGGGTACGGATCAAAAGGGTTTTCGATCTTGCGGCTTAGTAATAAACCCTA 1020
Query 1029 TTGGATTATCAAAAACTCGTGGGGGAAAAAGTGGGGAGAGAATGGATACTACAAGCTGTG 1088
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1021 TTGGATTATCAAGAACTCGTGGGGGAAGAAGTGGGGAGAGAATGGATACTACAAGCTGTG 1080
Query 1089 TCGTGGGCACGATATATGTGGGATTAACTCGATGGTATCTGCAGTAGCCACCCAAGTTTC 1148
|||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1081 TCGTGGCCACGATATTTGTGGGATTAACTCAATGGTCTCTGCAGTAGCCACCCAAGTTTC 1140
Query 1149 CTCGTAGATGGGTCTTGTC-TTTCCTCTGCTCTCTTGTTTTCTAATCTAGGGTTTGATCA 1207
|||||||||| ||||||| |||| ||||| ||||| |||| ||||||||||||| ||||
Sbjct 1141 GTCGTAGATGGTTCTTGTCCTTTC-TCTGCACTCTTCTTTTTTAATCTAGGGTTTTATCA 1199
Query 1208 TGTTTTAGGAGTGGAGTTTGGGGTTTGAATATTGGGT 1244
|||||||||||||||||| ||||||||||||| ||||
Sbjct 1200 TGTTTTAGGAGTGGAGTTGGGGGTTTGAATATCGGGT 1236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50360373357
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5