BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54950.1
Length=2106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485912 jgi|Araly1|485912|fgenesh2_kg.5__1904__AT3G54950.1 2313 0.0
Ahg934676 jgi|Araly1|934676|scaffold_402664.1 815 0.0
> Ahg485912 jgi|Araly1|485912|fgenesh2_kg.5__1904__AT3G54950.1
Length=2083
Score = 2313 bits (1252), Expect = 0.0
Identities = 1362/1415 (96%), Gaps = 7/1415 (0%)
Strand=Plus/Plus
Query 695 AACCCGAACCCGCGAATTCGGTTGTTGCTGGGTCGATTAAGAACCAGAGAGGTAAAATCT 754
|||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 672 AACCCGAACCCGCGGATTCGGCGGTTGCTGGCTCGATTAAGAACCAGAGAGGTAAAATCT 731
Query 755 GTATTCTGAGTATCGATGGAGGTGGAATGAGAGGGATCTTACCCGGTAAGGCTTTGGCTT 814
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 732 GTATTCTGAGCATCGATGGAGGTGGAATGAGAGGGATTTTACCCGGTAAGGCTTTGGCTT 791
Query 815 ATCTAGAACACGCTCTGAAATCTAAATCGGGTGACCCGAATGCCCGAATCGCCGATTACT 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 ATCTAGAACACGCTCTGAAATCTAAATCGGGTGACCCGAATGCCCGAATCGCCGATTACT 851
Query 875 TTGACGTAGCCGCCGGGTCCGGTATAGGTGGGATTTACACAGCCATGTTGTTCGGGTCAA 934
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 852 TTGATGTAGCCGCCGGGTCCGGTATAGGTGGGATTTACACAGCGATGTTGTTCGGGTCAA 911
Query 935 GAGACGGTAACCGCCCCATCTTCAAAGCAGATGACACGTGGCAGTTCTTAACGAGAAACG 994
||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 912 GAGACGGTAACCGTCCGATCTTCAAAGCAGAGGACACGTGGCAGTTCTTAACGAGAAACG 971
Query 995 CCAAGGGTCTTTAC---GGAGGAGCAGGAATCTTGAAACGGGTCTTGAGAACCGGGTCGG 1051
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 972 CCAAGGGTCTTTACGGAGGAGGAGGAGGAATCTTGAAACGGGTCTTGAGAACCGGGTCGG 1031
Query 1052 GTTGTTGTTCCGGGACGGCTAAGTTAAAGAAAGTGATGAAAGAGTCTTTCTCGGAGCTAA 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 GTTGTTGTTCCGGGACGGCTAAGTTAAAGAAAGTGATGAAAGAGTCTTTCTCGGAGCTAA 1091
Query 1112 CCTTAAAGGACACGCTTAAACCGGTGCTTATACCTTGCTACGACCTCAAAAGCTCTGGCC 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1092 CCTTAAAGGACACGCTTAAACCGGTGCTTATACCTTGCTACGACCTCAAAAGCTCTGCCC 1151
Query 1172 CGTTTCTGTTCTCACGGGCCGATGCGCTTGAGACGGACGGCTATGATTTTAGGCTCTCGG 1231
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1152 CGTTTCTGTTCTCACGCGCCGATGCGCTTGAGACGGACGGCTATGATTTTAGGCTCTGGG 1211
Query 1232 AGGTTTGTAGAGCGACTTGGGCTGAGCCGGGTGTGTTTGAGCCCGTGGAGATGAAGTCGG 1291
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1212 AGGTTTGTAGAGCGACTTGGGCTGAGCCGGGGGTGTTTGAGCCGGTGGAGATGAAGTCGG 1271
Query 1292 TTGATGGGCAGACCAAGTGTGTGGCTGTTGGTGGAGGATTAGCCATGAGCAATCCCACAG 1351
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1272 TTGATGGGCAGACCAAGTGTGTGGCCGTTGGTGGAGGATTAGCGATGAGCAATCCCACAG 1331
Query 1352 CGGCTGCAATCACGCATGTCCTGCACAACAAGCAGGAGTTTCCGTTTGTGCGAGGTGTTG 1411
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 CGGCTGCAATCACGCATGTGCTGCACAACAAGCAGGAGTTTCCGTTTGTGCGAGGTGTTG 1391
Query 1412 AGGATTTGCTTGTGTTGTCTCTTGGTATGGGTCAGTTGCTTGATGTTAGCTATGAGTATG 1471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 AGGATTTGCTTGTGTTGTCTCTTGGTATGGGTCAGTTGCTTGATGTTAGCTATGAGTATG 1451
Query 1472 ATCGGATTATCAAGTGGAAGGCTAAGCATTGGGCTCGCCCCGCAGCTCTTATTTCTAATG 1531
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 1452 ATCGGATTATCAAGTGGAAGGCTAAGCATTGGGCCCGTCCCGCGGCTCTTATTTCTAATG 1511
Query 1532 ACGGTGCTGCTGACACTGTCGATCAAGCTGTGGCCATGGCTTTTGGTCACTGCCGCAGTA 1591
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1512 ACGGTGCTGCTGACACCGTCGATCAAGCTGTGGCCATGGCTTTTGGTCACTGCCGCAGTA 1571
Query 1592 GTAACTATGTCCGGATTCAGGCGAATGGGTCGAACTTAGGACCTTGGAGTCCTAACATGG 1651
||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| |
Sbjct 1572 GTAACTATGTCCGGATTCAGGCGAATGGGTCGAGCTTAGGACCTTGTAGTCCAAACATAG 1631
Query 1652 ACACAGACCCTAGTGGGAGCAATGTGAATATGCTGATGGGAGTAGCAGAGGAGATGCTTA 1711
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1632 ACACAGACCCTAGAGGGAGCAATGTGAATATGCTGGTGGGAGTAGCAGAGGAGATGCTGA 1691
Query 1712 AACAAAAGAATGTTGAATCTGTTTTGTTTGGAGGTAAAAGAATCGATGAACAGAGCAACT 1771
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1692 AGCAAAAGAATGTTGAATCTGTTTTGTTTGGAGGTAAAAGAATCGATGAACAGAGCAACT 1751
Query 1772 TCGAGAAGCTTGACTGGTTAGCTGGGGAACTTGTTCTCGAGCATCAAAGGAGAAATAGCA 1831
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1752 TCGAGAAGCTTGACTGGTTAGCCGGGGAACTTGTTCTCGAGCATCAAAGGAGAAATAGCA 1811
Query 1832 GAATCGCTCCAACCGTAGCGTTCAAGCAATCCGTGCATAGAGCAGATCAAAAGACAAGTG 1891
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
Sbjct 1812 GAATCGCTCCAACCGTAGCGTTCAAGCAATCCATCCATAGAGCAGATCAAAAGACAAGGG 1871
Query 1892 ATAAAGATATCGGTGTGACCGCAAGAGAACGATGAAATAAGAAA-TGGTTTGCTTAGATG 1950
| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1872 ACAAAGATATCGGTGTGACCGCAAGAGAACGATGAAATAAGAAAATGGTTTACTTAGATG 1931
Query 1951 AtttttttAAGATAAGGTTTTTATTTCTTTCTTCTTAGGTTATGATTTGTTGTATAGATT 2010
||| ||| | ||||||||||| |||| ||||||||||||| |||||||||||||||||||
Sbjct 1932 ATTGTTT-AGGATAAGGTTTT-ATTTATTTCTTCTTAGGTCATGATTTGTTGTATAGATT 1989
Query 2011 TGTGTTTTTGAGATTGAGTTTCTGAGACATGATGAGAAAAGGGGAAACACCTATCATCTT 2070
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1990 TGTGTTTTTGAGTTTGAGTTTCCGAGACATGATGAGAAAAGGGGAAACACCTATCATCTT 2049
Query 2071 GCAAAGAGGGCTCAAGCTCCTTAATCCATGCTGCC 2105
||||| |||||||||||||||| || |||||||||
Sbjct 2050 GCAAA-AGGGCTCAAGCTCCTTCATTCATGCTGCC 2083
Score = 436 bits (236), Expect = 2e-121
Identities = 337/381 (88%), Gaps = 26/381 (7%)
Strand=Plus/Plus
Query 319 GATACCATTTTTTATATATATACCAAAAGTCCAAGACTGGTTTCATTTTTGGGTTTGGTC 378
||||||| ||||| | | | ||||| ||||| |||||||| | ||||||| |||||||
Sbjct 262 GATACCA-TTTTT-T-T-T-TACCAGAAGTCGAAGACTGG--T--TTTTTGGTTTTGGTC 312
Query 379 TGAAA-C-CTCTCTTCGTGTTGT-TTGTTCATGGTATGTCTTAATTAGGGTaaaaaaaTA 435
||||| | |||| ||| | | || |||||||| |||||| |||||| |||| || ||
Sbjct 313 TGAAATCGCTCT-TTC-T-TCGTGTTGTTCATCGTATGTATTAATTGGGGT--CAAGTTA 367
Query 436 CTTGATTGTTTTCTCTCAATCATCATGCATAGAGTACGCAATAAACCGGTTAAATCCACC 495
|||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 368 CTTGATTGGTTTCTCTCAATCATCATGCACAGAGTACGCAATAAACCGATTAAATCCACC 427
Query 496 GCTACTGCTTCCGTCAAGCATTTAATCAAACAGAGAGGC-----G-GCGACGGAGCTACG 549
|||||||||||||| |||||||||||||||||||||||| | ||||||||||||||
Sbjct 428 GCTACTGCTTCCGTTAAGCATTTAATCAAACAGAGAGGCGGAGGGAGCGACGGAGCTACG 487
Query 550 GCGGCTTCCAAGTCGGCGAATGATTATAATAAT-A-A-TGATAGTCTCTTGACGGATATG 606
|||||||||||||||||||||||| |||||||| | | | ||||||||||||||||||||
Sbjct 488 GCGGCTTCCAAGTCGGCGAATGATAATAATAATCAGAATAATAGTCTCTTGACGGATATG 547
Query 607 CAGGAACCAAGCATCGATACAGATAAACTCAGCTACGAGATTTTCTCTATTCTTGAGAGC 666
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 548 CAGGAACCTAGCATCGATACAGATAAACTCAGCTACGAGATTTTCTCGATTCTTGAGAGC 607
Query 667 AAATTTCTTTTCGGGTACGAC 687
|||||||||||||||||||||
Sbjct 608 AAATTTCTTTTCGGGTACGAC 628
Score = 329 bits (178), Expect = 4e-89
Identities = 244/273 (89%), Gaps = 16/273 (6%)
Strand=Plus/Plus
Query 21 TTTGTCCTTTCTCTTCAATCTGGGTTTGGTGGGGAGGTTTTAAGTCAAGCGTGCGATATA 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTGTCCTTTCTCTTCAATCTGGGTTTGGTGGGGAGGTTTTAAGTCAAGCGTGCGATATA 60
Query 81 TATATCATCAAAACAGACATCCTCTGTTCTTGCCtcttcttcttcttcttcttcttcatc 140
|||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 61 TATATC-TCAAAACAGACATCCTCTGTTCTTGCCTCTTCTTCTTCTTCTTCTT-T--ATC 116
Query 141 ttcttctATATATTGGTGTTTCATTTGTTCTGCTTTAAAAGTACACAAAGATTCATCTTT 200
| | |||||| | ||||||||||||||||||||| || |||| | ||||||||||| ||
Sbjct 117 TA-TACTATAT-T-GGTGTTTCATTTGTTCTGCTT-AAGAGTAAA-AAAGATTCATCCTT 171
Query 201 TT-TCGGTCCTC-T---GATTGGGCAAAAGACTAGCTCGGTCGTGTTTTGAACAAGAGAT 255
| ||||||||| | |||| ||| |||||| |||||| ||||||||||||||||||||
Sbjct 172 TGATCGGTCCTCCTTCTGATTTGGCTAAAGACGAGCTCGCTCGTGTTTTGAACAAGAGAT 231
Query 256 ACATG-TTTTGAAAAATTCCTCGCAAAAGAAGA 287
||| | ||||||| |||||||||||||||||
Sbjct 232 ACAGGATTTTGAAGG-TTCCTCGCAAAAGAAGA 263
> Ahg934676 jgi|Araly1|934676|scaffold_402664.1
Length=1531
Score = 815 bits (441), Expect = 0.0
Identities = 938/1173 (80%), Gaps = 54/1173 (5%)
Strand=Plus/Plus
Query 724 GGG-TCGATTAAGAACCAGAGAGGTAAAATCTGTATTCTGAGTATCGATGGAGGTGGAAT 782
||| || ||||||||||||||||||||| | ||| || ||||||||||| | ||||||||
Sbjct 302 GGGTTCAATTAAGAACCAGAGAGGTAAAGTTTGTGTTTTGAGTATCGATAGTGGTGGAAT 361
Query 783 GAGAGGGATCT-TACCCGGTAAGGCTTTGGCTTATCTAGAACACGCTCTGAAATCTAAAT 841
||||||||| | |||| || || ||||| || ||| ||||||| ||||||||||| ||||
Sbjct 362 GAGAGGGAT-TATACCTGGAAAAGCTTTAGCGTATTTAGAACATGCTCTGAAATCGAAAT 420
Query 842 CGGGTGACCCGAATGCCCGAATCGCCGATTACTTTGACGTAGCCGCCGGGTCCGGTATAG 901
||||||||||||||||||| || || |||||||| |||||||| |||| |||||||| |
Sbjct 421 CGGGTGACCCGAATGCCCGGATAGCTGATTACTTCGACGTAGCTTCCGGTTCCGGTATCG 480
Query 902 GTGGGATTTACACAGCCATG-TTGTTCGGGTCAAGAGACGGTAACCGCCCCATCTTCAAA 960
| ||||||| ||| || ||| || |||| ||| || || ||| |||| || |||||||||
Sbjct 481 GAGGGATTTTCACGGCGATGCTT-TTCGCGTCGAGTGATGGTGACCGTCCGATCTTCAAA 539
Query 961 GCAGATGACACGTGGCAGTTCTTAAC-GAGAAACGCCAAGGGTCTTT---ACGGAGGAGC 1016
|| || |||||||||| ||| ||| | ||||| | || | | ||| || | | |
Sbjct 540 GCGGAAGACACGTGGCGGTTTTTAGCTAAGAAAGGTAAAAGCT-TTTACAACAAATCACC 598
Query 1017 A---GGAAT-CTTGAAA-CGGGTCT-TGAGAACCGGGTCGGGTTGTT--GTTCCGGGAC- 1067
| || || | | ||| ||||| | ||| ||||||||||||| ||| | | ||| |
Sbjct 599 ACCGGGGATAC-T-AAACCGGGT-TATGAAAACCGGGTCGGGTGGTTCGGGT--GGGTCG 653
Query 1068 GG--CTAAG-TTAAAGAAAGTGATGAAAGAGTC-TTTCTCGGAGCTAAC-CTTAAAGGAC 1122
|| | ||| || |||||| |||||| ||||| ||| |||||| || |||||| |||
Sbjct 654 GGTTCGAAGCTT-GAGAAAGCGATGAAGGAGTCGTTT-GAGGAGCTTACGCTTAAA-GAC 710
Query 1123 ACGCTTAAACCGGTGCTT-ATACCTTGCTACGACCTCAAAAGCTCTGGC-CCGTTTC-TG 1179
||||| |||||||| || || ||||| |||||||| | |||||| || ||| ||| ||
Sbjct 711 ACGCTCAAACCGGT-TTTGATTCCTTGTTACGACCTTACGAGCTCT-GCACCG-TTCTTG 767
Query 1180 TTCTCACGGGCCGATGCGCTT-GAGACGGACGGCTATGATTTTAGGCTCTCGGAGGTTTG 1238
|| ||||| || |||||| || || |||||||| |||||||||| ||| | |||||||||
Sbjct 768 TTTTCACGTGCTGATGCG-TTGGAAACGGACGGTTATGATTTTAAGCTGTGGGAGGTTTG 826
Query 1239 TAGAGCGACTTGGGCTGAGCCGGGTGTGTTTGAGCCCGTGGAGATGAAG-TCGGTTGATG 1297
|||||| || ||||||||||| || ||||||||||| ||||||||| || || |||||||
Sbjct 827 TAGAGCTACGTGGGCTGAGCCAGGAGTGTTTGAGCCGGTGGAGATG-AGATCAGTTGATG 885
Query 1298 GGCAGAC-CAAGTGTGTGGCTGTTGGTGGAGGATTAGCCATGAGCAATCCCACAGCGGCT 1356
| | || | ||||||||| |||| ||| || ||||| ||||| ||||| || || ||
Sbjct 886 GTAAAACGC-GGTGTGTGGCGGTTGATGGTGGTTTAGCTATGAGTAATCCTACGGCTGCA 944
Query 1357 GCAATCACGCATGTCCTGCACAACAAGCAGGAGTTTCCGTTTGTGCGAGGTGTTGAGGAT 1416
||||| || ||||| |||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 945 GCAATTACTCATGTGTTGCATAACAAGCAAGAGTTTCCGTTTGTTAGAGGTGTTGAGGAT 1004
Query 1417 TTGCTTGTGTTGTCTCTTGGTATGGGTCAGTTGCTTGATGTTA-GCTATGAGTATGATC- 1474
|||||||||||||| ||||||| ||| |||||| ||||||||| | ||||| | ||||
Sbjct 1005 TTGCTTGTGTTGTCACTTGGTACGGGACAGTTGGTTGATGTTAAG-TATGATTGTGATAA 1063
Query 1475 GGATTATCAAGTGGAAGGCTAAGCATTGGGCTCGCCCCGCAGCTCTTATTTCTAATGACG 1534
|| || | |||||||||||||||||||||||||| || || | || |||||| ||| |
Sbjct 1064 GG-TTCTGAAGTGGAAGGCTAAGCATTGGGCTCGGCCTGCGGTTCGGATTTCTGCTGATG 1122
Query 1535 GTGCTGCTGACACTGTCGATCAAGCTGTGGCCATGGCTTTTGGTCACTGCCGCAGTAGTA 1594
| || ||||| ||||| ||||| ||||| ||||||| |||||||| || | || ||||
Sbjct 1123 GAGCGGCTGATACTGTGGATCAGGCTGTTTCCATGGCGTTTGGTCAGTGTAGGAGGAGTA 1182
Query 1595 ACTATGTCCGGATTCAGGCGAATGGGTCGAA-CTTAGGACCTTGGAGTCCTAACATGGAC 1653
|||| ||||| |||||||||||||| || || ||| || || || | || ||||| |||
Sbjct 1183 ACTACGTCCGTATTCAGGCGAATGGATC-AAGCTTTGGTCCGTGCAAACCAAACATAGAC 1241
Query 1654 ACAGACCCTAGTGGGAGCAATGTGAATATGCT-GATGGGAGTAGCAGAGGAGATGCTTAA 1712
||||| | ||| ||||||||||||||||| | |||||||||||||||||||||| |
Sbjct 1242 ACAGATGCGAGTCCAAGCAATGTGAATATGCTTG-TGGGAGTAGCAGAGGAGATGCTGAG 1300
Query 1713 ACAAAAGAATGTTGAATCTGTTTTGTTTGGAGGTAAAAGAATCGATGAACAGAGCAACT- 1771
|||||||| | || |||||| ||||||| ||||||| |||| ||||| | ||||| |
Sbjct 1301 GCAAAAGAACGCAGAGTCTGTTCTGTTTGGTGGTAAAAAAATCAATGAAGAAAGCAATTA 1360
Query 1772 TCGAGAAGCTTGACTGGTTAGCTGGGGAACTTGTTCTCGAGCATCAAAGGAGAAATAGCA 1831
| |||||||| || |||||||| || ||||| || ||||| || || ||||| | | |||
Sbjct 1361 T-GAGAAGCTGGATTGGTTAGCCGGTGAACTCGTGCTCGAACACCAGAGGAGGAGTTGCA 1419
Query 1832 GAATCGCTCCAACCGTAGCGTTCAAGCAATCCG 1864
|||||||||| || |||||||||||||||||||
Sbjct 1420 GAATCGCTCCCACTGTAGCGTTCAAGCAATCCG 1452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79227709600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5