BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54960.1
Length=1962
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485913 jgi|Araly1|485913|fgenesh2_kg.5__1905__AT3G54960.1 3079 0.0
> Ahg485913 jgi|Araly1|485913|fgenesh2_kg.5__1905__AT3G54960.1
Length=1891
Score = 3079 bits (1667), Expect = 0.0
Identities = 1836/1914 (96%), Gaps = 25/1914 (1%)
Strand=Plus/Plus
Query 5 ACTTACATACAACAATGGCTTCGTCATCTACAAGTAtctctctccttctcttcgtctctt 64
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACTTACATACAACAATGGCGTCGTCATCTACAAGTATCTCTCTCCTTCTCTTCGTCTCTT 60
Query 65 tcattcttcttctcGTTAACTCGCGTGCAGAGAATGCGTCCAGTGGATCGGATCTCGACG 124
|| |||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 TCCTTCTCCTTCTCGTTGACTCGCGTGCAGAGAATGCATCCAGTGGATCGGATCTCGACG 120
Query 125 AAGAATTGGCTTTCCTCGCCGCGGAGGAATCCAAGGAACAAAGCCACGGCGGCGGTTCGT 184
| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 121 AGGAATTGGCTTTCCTCGCCGCGGAGGAATCTAAGGCACAAAGCCACGGCGGCGGTTCGT 180
Query 185 ACCACGAGGAGGAGCACGATCATCAGCACCGAGACTTCGAGAATTACGATGATCTCGAGC 244
||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 181 ACCAC---GAGGAGCACG---ATCAGTACCGAGACTTCGAGAATTACGATGATCTCGAGC 234
Query 245 AAGGAGGCGGCGAGTTTCATCACGGCGATCACGGTTACGAGGAGGAGCCGTTACCACCAG 304
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||
Sbjct 235 AAGGAGGCGGCGAGTTTCATCACGGCGAGCACAGTTACGAGGAGGAGCCGTTACCAACAG 294
Query 305 TCGACGAGAAAGACGTGGCGGTTCTGACCAAGGACAATTTCACCGAGTTCGTCGGCAACA 364
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 295 TCGACGAGAAAGACGTGGCGGTTTTGACCAAGGACAATTTCACCGAGTTCGTCCGCAACA 354
Query 365 ATAGCTTCGCGATGGTGGAGTTTTACGCTCCGTGGTGCGGCGCTTGTCAGGCTTTGACTC 424
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 355 ATAGCTTCGCGATGGTGGAGTTTTACGCTCCTTGGTGCGGCGCTTGTCAGGCTTTGGCGC 414
Query 425 CGGAGTACGCCGCGGCTGCGACGGAGTTGAAAGGCCTTGCGGCGCTCGCGAAGATCGACG 484
||||||||||||| ||||| ||||||||||||||| |||| |||||||| ||||||||||
Sbjct 415 CGGAGTACGCCGCCGCTGCCACGGAGTTGAAAGGCGTTGCCGCGCTCGCCAAGATCGACG 474
Query 485 CGACGGAGGAAGGGGATTTGGCTCAGAAGTACGAGATTCAGGGCTTCCCCACCGTTTTCT 544
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 475 CGACGGAGGAAGGCGATTTGGCTCAGAAGTACGAGATTCAGGGATTCCCCACCGTTTTCT 534
Query 545 TGTTTGTCGACGGAGAAATGCGCAAGACCTACGAAGGTGAAAGAACAAAGGATGGTATTG 604
||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 535 TGTTTGTCGACGGAGAAATGCGCAAGACCTACGAAGGCGAAAGGACTAAGGATGGTATTG 594
Query 605 TGACTTGGCTGAAGAAGAAGGCCAGTCCTAGCATCCACAACATCACTACTAAAGAGGAGG 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TGACTTGGCTGAAGAAGAAGGCCAGTCCTAGCATCCACAACATCACTACTAAAGAGGAGG 654
Query 665 CTGAACGTGTTTTGTCCGCTGAACCTAAACTTG-TCTTTGGTTTTCTCAACTCATTAGTG 723
|||| |||||||||||||||||||||||||||| || |||||||||||||||| ||||||
Sbjct 655 CTGAGCGTGTTTTGTCCGCTGAACCTAAACTTGTTC-TTGGTTTTCTCAACTCCTTAGTG 713
Query 724 GGGTCAGAGAGTGAGGAGCTCGCGGCTGCGTCCAGACTGGAAGACGATCTCAGTTTTTAC 783
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 714 GGGTCAGAGAGTGAGGAGCTTGCAGCTGCATCCAGACTGGAAGACGATCTCAGTTTTTAC 773
Query 784 CAAACTGCAAGCCCTGATATTGCAAAGCTATTTGAAATTGAAACCCAAGTCAAGCGTCCT 843
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 774 CAAACTGCAAGCCCTGATATTGCAAAGCTATTTGAAATAGAAACCCAAGTCAAGCGTCCT 833
Query 844 GCCTTAGTTTTACTGAAAAAGGAGGAAGAGAAACTTGCCCGTTTTGATGGAAACTTCACT 903
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 834 GCCTTAGTTTTACTGAAAAAGGAGGAAGAGAAACTTGCCCGTTTTGATGGAAATTTCACT 893
Query 904 AAAACGGCTATAGCAGAGTTTGTGTCAGCCAACAAAGTCCCATTGGTGATCAACTTCACA 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 AAAACGGCTATAGCAGAGTTTGTGTCAGCCAACAAAGTCCCATTGGTGATCAACTTCACA 953
Query 964 AGGGAAGGTGCATCACTGATTTTCGAGAGCTCAGTGAAAAACCAACTCATTCTTTTTGCC 1023
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 954 AGGGAAGGTGCATCACTGATTTTCGAGAACGCAGTGAAAAACCAACTCATTCTTTTTGCC 1013
Query 1024 AAGGCAAATGAATCAGAGAAGCACCTTCCCACTCTGAGGGAGGTGGCAAAGTCCTTCAAG 1083
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 ACGGCAAATGAATCAGAGAAGCACCTTCCCACTCTGAGGGAGGTGGCAAAGTCCTTCAAG 1073
Query 1084 GGAAAGTTTGTTTTCGTTTATGTGCAAATGGACAATGAAGATTATGGAGAAGCAGTTTCT 1143
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1074 GGAAAGTTTGTTTTTGTTTATGTGCAAATGGACAATGAGGATTATGGAGAAGCAGTTTCT 1133
Query 1144 GGATTCTTTGGTGTTACCGGCGCTGCCCCCAAGGTTCTTGTATACACTGGTAATGAAGAT 1203
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1134 GGATTCTTTGGTGTTACCGGCACTGCCCCCAAGGTTCTTGTATACACTGGAAATGAAGAT 1193
Query 1204 ATGAGGAAGTTTATTCTGGACGGTGAATTGACCGTAAATAACATTAAGACACTTGCGGAA 1263
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1194 ATGAGGAAGTTTATTCTGGACGGTGAATTGACCGTAAAGAACATTAAGACACTTGCGGAA 1253
Query 1264 GATTTCCTAGCAGACAAACTGAAGCCTTTCTACAAGTCAGATCCACTACCGGAAAATAAC 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GATTTCCTAGCAGACAAACTGAAGCCTTTCTACAAGTCAGATCCACTACCGGAAAATAAC 1313
Query 1324 GATGGTGATGTTAAGGTCATTGTGGGAAACAATTTTGATGAGATTGTTCTTGACGAGTCA 1383
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 GACGGTGATGTTAAGGTCATTGTGGGAAACAATTTTGATGAGATTGTTCTTGACGAGTCA 1373
Query 1384 AAGGATGTTCTTCTCGAGATATATGCTCCTTGGTGTGGCCACTGCCAATCATTTGAGCCG 1443
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 AAGGATGTCCTTCTCGAGATATATGCTCCTTGGTGTGGCCACTGCCAATCATTTGAGCCG 1433
Query 1444 ATTTACAACAAGCTTGGAAAGTATTTAAAAGGCATTGACTCGTTAGTTGTAGCAAAGATG 1503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 ATTTACAACAAGCTTGGAAAGTATTTAAAAGGCATTGACTCGTTAGTTGTAGCAAAGATG 1493
Query 1504 GATGGTACCAGCAATGAGCATCCTAGAGCAAAGGCTGATGGGTTCCCAACAATCCTGTTC 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 GATGGTACCAGCAATGAGCATCCTAGAGCAAAGGCTGATGGGTTCCCAACAATCCTGTTC 1553
Query 1564 TTCCCTGGTGGAAACAAAAGCTTCGATCCGATCGCTGTGGATGTTGACCGTACAGTAGTG 1623
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1554 TTCCCTGGTGGAAACAAGAGCTTCGATCCGATCACTGTGGATGTTGACCGTACAGTAGTG 1613
Query 1624 GAACTGTACAAATTCCTGAAGAAGCACGCATCAATCCCATTTAAACTTGAGAAACCGGCG 1683
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1614 GAACTGTACAAATTCCTGAAGAAGCACGCATCAACCCCATTTAAACTTGAGAAACCGGCG 1673
Query 1684 ACACCTGAACCGGTGATCTCGACCATGAAATCTGATGAGAAGATCGAGGGTGATAGTTCC 1743
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1674 ACACCTGAACCGGTGATCTCGACCAAGAAAGCTGATGAGAAGATCGAGGGTGATAGTTCC 1733
Query 1744 AAGGATGAGTTGTGATGATCGGAACAGAGTGTGTAACAAGGCTATAGATGATGACTCTTC 1803
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1734 AAGGATGAGTTGTGATGATCGGAACAGAGTGTGTAACA-GGCTATAGATGATGACTCTTC 1792
Query 1804 TATAAATGATAGAAAATGTTTTGCCCTTTGtttttttCCATTGTTGTATGCTATGAAATG 1863
|||| |||||| ||||| |||| ||| |||||||||||||||||||||
Sbjct 1793 TATACATGATAAAAAAT-TTTT----TTT----------ATTGTTGTATGCTATGAAATG 1837
Query 1864 AATAATTAAA-GAAGTTTTGGTTTCTCAAGTTTTTGGATGTAACTGGAGGTTTG 1916
|||||||||| ||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1838 AATAATTAAAAGAATTTTTGGTTTCTCAAGTTTGTGGATGTAACTGGAGGTTTG 1891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73742714320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5