BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54970.1
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324027 jgi|Araly1|324027|fgenesh1_pm.C_scaffold_5001571 1635 0.0
> Ahg324027 jgi|Araly1|324027|fgenesh1_pm.C_scaffold_5001571
Length=1080
Score = 1635 bits (885), Expect = 0.0
Identities = 1021/1083 (94%), Gaps = 24/1083 (2%)
Strand=Plus/Plus
Query 29 ATGTCGAATTGCAGATTTCTCTACCACAACGGTGTCGTTTTGGAGGCTCCTCCGGTCACT 88
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGTCGAATTGCAGATTTCTCTACCACAACGGTGTCGTTTTGGAGGCTCCTCCCGTCACC 60
Query 89 ACCTTCCTTGAATCGCACACGGGTGCTTATACAACGACGAGAACGATAAACAATGGTACT 148
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 ACCTTCCTTGAATCGCTCACGGGTGCTTATACAACGACGAGAACGATAAACAATGGCACT 120
Query 149 AGTTTCTTGTTCTGGGAGAGACACATGAAGAGACTTTCTAGCTCGATTCGTATTCTTTTG 208
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 121 AGTTTCTTGTTCTGGGAGAGACATATGAAGAGACTTTCTAGCTCGATTCGTATCCTTTTG 180
Query 209 AAGTCAAATCCCGAGCTTTTGTTCAGTTCTGGGTCATCACCGCGGTTTTGGATGAATCAA 268
|| ||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 AATTCAAAGCCTGAGCTTTTGTTCAGTTCTGGGTCATCACCGCGGGTTTGGATGAATCAA 240
Query 269 CCAGTTCCTGGTTCGAGTATTTACGATCGAGTCAATGGCTCTATGAGCGAGGCCCTGAAG 328
||||||||| ||||||||| ||||||| ||||||||| ||||||||||| |||||||||
Sbjct 241 CCAGTTCCTCATTCGAGTATATACGATCTAGTCAATGGTTCTATGAGCGAAGCCCTGAAG 300
Query 329 TCTGTTGTTGTCAAGGAAAGTGAAAGACTCTATGGAGAAGAATTAGCAGTAACTGTTCTT 388
||||||||||||||||||||||| ||| | ||||||||||||||||| ||||||||||||
Sbjct 301 TCTGTTGTTGTCAAGGAAAGTGATAGAATTTATGGAGAAGAATTAGCGGTAACTGTTCTT 360
Query 389 GTTACTGGTAATGTGGAGAAATTGAATAGGTTAGATGTTGGGAAC-AA--T--T------ 437
|||||||||||||||| |||||||||||||||||||| ||||||| || | |
Sbjct 361 GTTACTGGTAATGTGGGGAAATTGAATAGGTTAGATGATGGGAACAAATGTGATGAGGAG 420
Query 438 ------G----GGATTTTCTAGATGTGTGGTTGCATATAGGTGCATACTCGCCTTTAGGC 487
| ||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 421 AGAAAGGTTCTGGATTTTCTAGATGTGTGGTTGCATTTAGGTGCATACTCGCCTTT---C 477
Query 488 CCGTTAGGTGTTGGAGAAAATGCCGCGAGTTTGGCTTTGGTTGGTCGTGGACGAGATGTA 547
||||||| |||| |||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 478 CCGTTAGATGTTCGAGAAAATGCTGCGAGTTTGGCTTTGGTTGGTCCTGGACGAGATGTA 537
Query 548 GCTGCTGCTAAATACTCAGACTGGGTTAGGCTTAGGAAGCCTCTGGAGAAGTTTAGACCT 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 538 GCTGCTGCTAAATACTCAGACTGGGTTAGGCTTAGGAAGCCTCTGGAGAAGTTTAGATCT 597
Query 608 CCTTTGACCACTGAACTTCTTTTGTCAAACGATGGTGATCATTTGCTTGAGGGCTGCATC 667
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 598 CCTTCGACCACTGAACTTCTTTTGTCAAACGATGGTGATCATTTGCTTGAGGGATGCATC 657
Query 668 ACAAACTTTTTCGTAGTTTGCCGCAGGGTGAAGTCATCAGAGAATCTCTACGGCGGGAGT 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ACAAACTTTTTCGTAGTTTGCCGCAGGGTGAAGTCATCAGAGAATCTCTACGGCGGGAGT 717
Query 728 TTGAGCGAGTTTGAGGTGCAGACCGCGCCTATAACTGATGGTGTGCTAGCAGGAGTTATA 787
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 718 TTGAGCGAGTTTGAGGTGCAGACCGCACCTATAACTGATGGTGTGCTAGCAGGAGTTATA 777
Query 788 AGAGACCTTGTCATCGAAGTGTGTTTAAGCGAGGGGATTCCATACCGCGAGAGAGCACCT 847
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 778 AGAGACCTTGTCATCGAAGTGTGTTTAAGCAAGGGGATTCCATACCGCGAGAGAGCACCT 837
Query 848 TCGTGGTCTGAGCGTGAGCTTTGGGAAGAAGCCTTCATTACAAGTAGTCTGAGGATTTTG 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TCGTGGTCTGAGCGTGAGCTTTGGGAAGAAGCCTTCATTACAAGTAGTCTGAGGATTTTG 897
Query 908 CAGCATGTAGGGACGATCAAAGTACCCGTTGGTTCAATGGAGGGATTGGCTTGTAACAAA 967
||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||
Sbjct 898 CAGCATGTAGGGACGATCAAAATACCCGTTGGTTCATTGGAGGCATTGGCTTGTAACAAA 957
Query 968 CCTGAGGAGATTCAATGGAAGGAGAAAAGGTTTAAGGAAAGACCTGGGATGATCACTGAA 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CCTGAGGAGATTCAATGGAAGGAGAAAAGGTTTAAGGAAAGACCTGGGATGATCACTGAA 1017
Query 1028 TTAATCAAGAAAGCGATAATGGAGAGAGGTATTAAAGAAGGGTTCCCGTTGAAGGCCTTT 1087
|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1018 TTAATCCAGAAAGCGGTAATGGAGAGAGGTATTGAAGAAGGGTTCCCGTTGAAGGCCTTT 1077
Query 1088 TAG 1090
|||
Sbjct 1078 TAG 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46738696242
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5