BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54980.1
Length=2836
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485917 jgi|Araly1|485917|fgenesh2_kg.5__1909__AT3G54980.1 4460 0.0
Ahg934677 jgi|Araly1|934677|scaffold_402665.1 1271 0.0
> Ahg485917 jgi|Araly1|485917|fgenesh2_kg.5__1909__AT3G54980.1
Length=2793
Score = 4460 bits (2415), Expect = 0.0
Identities = 2677/2804 (95%), Gaps = 15/2804 (1%)
Strand=Plus/Plus
Query 20 TTTTCTCTGCTGAAGATAGTTGAGAGAAGAACCTC-GAAAGATGAGATCTTTATTGGTTT 78
||||||||||||||||||||| ||| |||||| | |||||||||||||||||||| ||
Sbjct 1 TTTTCTCTGCTGAAGATAGTT--GAG-AGAACC-CAAAAAGATGAGATCTTTATTGGGTT 56
Query 79 TTAGAAAAATCCCTTCACGGATTCGTCTTCGTAACTTGAGAAACAATAAACCCTTTTGTT 138
|||||||||||||||| || |||| |||||| ||||||||||||||||||||||||||
Sbjct 57 TTAGAAAAATCCCTTCGGGGCTTCGCCTTCGTTGCTTGAGAAACAATAAACCCTTTTGTT 116
Query 139 CACAGTCTCAG-TTTCC-CAAAGAATCTGAGAATCCAAGTCAAGAGCAGAGACTACTAGT 196
||||||||| | ||||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct 117 CACAGTCTC-GATTTCCTC-AAGAATCTGAGAATCCAAGTCAAGAGCAGAG---ACTAGT 171
Query 197 TTACGGATCCACTTCTGAAGAAAACCCAGTTACCTCCAAAGTGAGTCTTTTGTCTGCGAA 256
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 172 TTGCGGATCCACTTCTGAAGAAAACCCAGTTACCTCCAAAGTGAGTCTTTTGGCTGCTAA 231
Query 257 GCCTGAACAGAAGGACGATGCATCTGTAATCGATGTTCTTCTCAATCGCAGGAACAACCC 316
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 232 GCCTGAACAGAAGGACGATGCATCTGTAATCGACGTTCTTCTCAATCGCAGGAACAACCC 291
Query 317 AGAAGCTGCTCTTCGTTTCTATAATTGGGCTAGACCATGGCGTGGAAGTTTTGAAGATGG 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 AGAAGCTGCTCTTCGTTTCTATAATTGGGCTAGACCATGGCGTGGAAGTTTTGAAGATGG 351
Query 377 TGACGTCTTCTGGGTACTCATTCATATTCTGGTCAGTTCTCCTGAGACCTATGGACGTGC 436
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct 352 TGACGTCTTCTGGGTACTCATTCATATTCTGGTTACTTCTCCTGAGACCTATGGACGCGC 411
Query 437 AAGTGATTTGCTCATACGGTACGTTTCTACGAGCAATCCAACTCCAATGGCAAGTGTTTT 496
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 AAGCGATTTGCTCATACGGTACGTTTCTACGAGCAATCCAACTCCAATGGCAAGTGTTTT 471
Query 497 GGTCAGTAAATTGGTGGATTCGGCGAAATCATTTGGGTTTGAAGTCAATTCACGAGCTTT 556
||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 472 GGTCAGTAATTTGGTGGATTCGGCGAAGTTGTTTGGGTTTGAAGTCAATTCACGAGCTTT 531
Query 557 TAATTACTTATTGAATGCTTATTCTAAAGATAGGCAAACGGATCATGCGGTGGATATCGT 616
||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 532 TAATTACTTGTTGAATGCTTATTCCAAAGATAGGCAAACGGATTGTGCGGTGGATATCGT 591
Query 617 CAACCAGATGTTGGAACTAGATGTGATTCCATTTTTTCCATATGTGAATAGGACCTTGAG 676
||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 592 CAATCAGATGTTGGAACTAGGTGTGATTCCATTTGTTCCATATGTGAATAGGACCTTGAG 651
Query 677 TGCTTTAGTTCAAAGGAATTCGTTAACTGAAGCTAAGGAACTCTACAGTAGGATGGTTGC 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TGCTTTAGTTCAAAGGAATTCGTTAACTGAAGCTAAGGAACTCTACAGTAGGATGGTTGC 711
Query 737 CATTGGTGTTGATGGTGATAATGTAACAACGCAATTGTTAATGAGAGCTAGTTTGAGAGA 796
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 712 CATTGGTGTTGATGGTGATAATGGCACAACGCAATTGTTAATGCGAGCTAGTTTGAGAGA 771
Query 797 AGAAAAGCCTGCGGAGGCTTTGGAGGTTTTAAGTAGAGCTATTGAGAGAGGAGCAGAACC 856
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 772 AGAGAAGCCTGCGGAGGCTTTGGAGGTTTTTAGTAGAGCTATTGAGAGAGGAGCAGAACC 831
Query 857 GGATAGTTTACTGTATAGTCTTGCTGTTCAGGCTTGTTGCAAGACGCTTGATTTGGCTAT 916
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 832 GGATAGTTTACTGTATAGTCTTGCTGTTCAGGCTTGTTGCAAGACGCTCAATTTGGCTAT 891
Query 917 GGCTAATAGTTTATTGAGAGAGATGAAGGAGAAGAAGTTGTGTGTCCCGTCGCAGGAAAC 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GGCTAATAGTTTATTGAGAGAGATGAAGGAGAAGAAGTTGTGTGTCCCGTCGCAGGAAAC 951
Query 977 TTATACTTCTGTGATTTTGGCTTCTGTGAAGCAAGGTAATATGGATGATGCAATTAGATT 1036
||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 952 GTATACTTCTGTGATTTTGGCTTCCGTGAAGCAAGGTAACATGGAGGATGCAATTAGATT 1011
Query 1037 GAAGGATGAGATGTTGAGTGATGGGATATCGATGAATGTAGTTGCTGCGACGAGTCTGAT 1096
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1012 GAAGGATGAGATGGTGAGTGATGGGATATCGATGAATGTAGTTGCTGCGACAAGTCTGAT 1071
Query 1097 CACGGGACACTGCAAGAACAATGACTTGGTTAGTGCTTTGGTTTTGTTTGATAAGATGGA 1156
||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||
Sbjct 1072 CACGGGACACTGCAAGAACAATGACTTGGGTAGTGCTTTGGATTTGTTTTATAAGATGGA 1131
Query 1157 AAAGGAAGGCCCCTCTCCGAACAGCGTTACTTTTTCGGTTCTGATAGAATGGTTTCGTAA 1216
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1132 AAAGGAAGGCCCCTCTCCAAACAGCGTTACTTTTTCGGTTCTGATAGAACGGTTTAGTAA 1191
Query 1217 GAACGGGGAAATGGAAAAGGCGCTTGAATTTTACAAGAAAATGGAA-GTCTTAGGTCTTA 1275
|||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||
Sbjct 1192 GAACGGGGAAATGGAAAAGGCGCTTGAATTCTACAAGAAAATGGAAAGT-TTAGGTCTTA 1250
Query 1276 CTCCTTCTGTCTTTCATGTCCACACGATAATTCAAGGGTGGTTGAAAGGTCAGAAACATG 1335
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1251 CTCCTTCTGTCTTTCATGTCCACACGATAATCCAAGGGTGGTTGAAAGGTCAGAAACATG 1310
Query 1336 AAGAGGCACTGAAACTCTTTGACGAGTCTTTTGAAACCGGTCTTGCAAACGTGTTTGTAT 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1311 AAGAGGCACTGAAACTCTTTGACGAGTCTTTTGAAACCGGTCTTGCAAACGTGTTCATTT 1370
Query 1396 GTAACACTATATTATCCTGGTTATGCAAGCAAGGTAAGACAGACGAAGCTACAGAGTTAT 1455
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1371 GTAACACTATATTATCCTGGTTATGCAAGCAAGGTAAGATAGACGAAGCTACGGAGTTAT 1430
Query 1456 TAAGCAAGATGGAAAGTAGAGGTATTGGACCGAATGTAGTTTCTTACAATAACGTGATGC 1515
|||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1431 TAAGGAAGATGGAAAGTAGAGGTATTGGACCGAATGTTGTTTCTTACAATAATGTGATGC 1490
Query 1516 TTGGCCACTGCAGACAGAAAAACATGGACTTGGCTCGTATTGTTTTTTCAAATATACTGG 1575
||| ||| |||||| |||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1491 TTGCCCATTGCAGAAAGAAAAACATGGACTTGGCTCGTACTGTTTTTTCAAATATGCTGG 1550
Query 1576 AAAAGGGTCTAAAGCCGAATAACTACACGTATTCCATTCTGATTGATGGATGTTTCAGGA 1635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1551 AAAAGGGTCTAAAGCCGAATAACTACACGTATTCCATTCTGATTGATGGATGTTTCAAGA 1610
Query 1636 ATCATGATGAACAAAACGCTTTGGAAGTCGTCAATCATATGACTTCTTCCAATATTGAAG 1695
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1611 ATCATGATGAACAAAACGTTTTGGAAGTCGTCAATCAAATGACTTCTTCCAATATTGAAG 1670
Query 1696 TCAACGGGGTTGTATACCAAACAATTATCAATGGTTTATGCAAAGTTGGTCAGACATCCA 1755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 TCAACGGGGTTGTATACCAAACAATTATCAATGGTTTATGCAAAGTTGGTCAGACATCCA 1730
Query 1756 AAGCAAGAGAATTGTTGGCAAATATGATCGAAGAAAAACGGTTATGTGTTAGTTGCATGA 1815
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1731 AAGCAAGAGAACTGTTGGCAAATATGATCGAAGAAAAACGGTTTTGTGTTAGTTGCATGA 1790
Query 1816 GTTACAATAGCATTATAGATGGATTTTTCAAAGAGGGTGAAATGGATTCTGCGGTTGCAG 1875
|||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||
Sbjct 1791 GTTACAATAGCATTATAGATGGATTTATCAAAGAAGGTGAAATGGATTATGCGGTTGCAG 1850
Query 1876 CATACGAAGAGATGTGTGGCAATGGTATTTCTCCAAACGTCATAACTTATACCAGCTTGA 1935
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 CATACGAAGAGATGTGTGCCAATGGTATTTCTCCAAACGTCATAACTTATACCAGCTTGA 1910
Query 1936 TGAATGGGTTATGCAAAAATAACAGAATGGATCAAGCATTGGAAATGAGAGACGAAATGA 1995
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1911 TGGATGGGTTATGCAAAAATAACAGAATGGATCAAGCATTGGAAATGAGAGACGAAATGA 1970
Query 1996 AGAACAAAGGTGTCAAACTCGATATTCCAGCCTATGGTGCTCTTATCGATGGGTTCTGCA 2055
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1971 AGAACAAAGGTGTCAAACTCGATATTCCAGCTTATGGTGCTCTTATCCATGGGTTCTGCA 2030
Query 2056 AAAGGAGTAACATGGAAAGCGCATCTGCTCTGTTCTCTGAACTCCTTGAAGAAGGATTGA 2115
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2031 AAAAGAGTAACATGGAAAGCGCATCTGCTCTGTTCTCTGAACTCCTTGAAGAAGGATTGA 2090
Query 2116 ATCCAAGCCAACCTATATACAACAGCTTGATTTCTGGATTTCGTAATCTGGGAAACATGG 2175
|||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2091 ATCCAAGCCAACCTGTGTACAACAGCTTGATTTCTGGATTTCGTAATTTGGGAAACATGG 2150
Query 2176 TAGCAGCCCTTGATTTGTACAAGAAAATGTTGAAAGACGGTCTACGATGTGATCTGGGTA 2235
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2151 TAGCAGCCCTTGATTTGTACAAAAAAATGTTGAAAGACGGTCTACGATGTGATCTGGGTA 2210
Query 2236 CATATACAACACTGATTGATGGATTGTTGAAAGATGGAAATTTGATCCTGGCCTCTGAGT 2295
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 2211 CATATACAACACTGATTGATGGATTGTTGAAAGAAGGAAATTTGATCCTGGCCTCTGATT 2270
Query 2296 TGTACACAGAAATGCAGGCGGTGGGTCTTGTCCCTGATGAAATCATTTACACAGTAATTG 2355
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 2271 TGTACACAGAAATGCAGGCAGTGGGTCTTGTCCCTGATGAAATCATGTACACAGTAATTG 2330
Query 2356 TAAACGGTCTTAGCAAGAAGGGGCAGTTTGTAAAAGTGGTTAAGATGTTTGAGGAGATGA 2415
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2331 TAAACGGTCTTAGCAAGAAGGGACAGTTTGTAAAAGTGGTTAAGATGTTTGAGGAGATGA 2390
Query 2416 AGAAGAATAATGTCACTCCGAATGTCCTTATCTACAACGCGGTGATTGCCGGACATTATA 2475
||||||||||||| ||||| ||||| |||||||||||||||||||| || ||||||||||
Sbjct 2391 AGAAGAATAATGTGACTCCAAATGTTCTTATCTACAACGCGGTGATCGCAGGACATTATA 2450
Query 2476 GAGAAGGAAATCTCGATGAGGCTTTTAGACTTCACGATGAGATGCTTGACAAGGGTATTT 2535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2451 GAGAAGGAAATCTCGATGAGGCTTTTAGACTTCACGATGAGATGCTTGACAAGGGTATTC 2510
Query 2536 TACCCGATGGTGCTACATTTGATATTCTAGTTAGTGGGCAAGTCGGAAACCTCCAACCTG 2595
|||| ||||||||||||||||||||||||||||||||| |||||||||| | ||||||
Sbjct 2511 TACCTGATGGTGCTACATTTGATATTCTAGTTAGTGGGAAAGTCGGAAAATTTCAACCTA 2570
Query 2596 TACGTGCAGCAAGTTTGTAGTCTGCCAAAACCAGACCACATTATTGACTGATGACTTAGC 2655
|||||||||||||||||||||||| ||||||| | |||| |||||||||| | |||||||
Sbjct 2571 TACGTGCAGCAAGTTTGTAGTCTGGCAAAACCGGGCCACGTTATTGACTGGTTACTTAGC 2630
Query 2656 TTTGGCTTTTCGTGAGACCCCGATAATATGACTGCTTAAGGTGTGCACTTTTCATTTTGC 2715
||||||||| |||| ||||| |||||| |||||||||||||||||||||||||| |||||
Sbjct 2631 TTTGGCTTTCCGTGTGACCC-GATAATCTGACTGCTTAAGGTGTGCACTTTTCAATTTGC 2689
Query 2716 ACGGTTGTAGTATAAATGTTGTTATTCATGAAAGAGGGAGACTCTATAGACTTTCTGTAA 2775
|||||| |||||| ||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 2690 ACGGTTTTAGTATGGATGTTTTTATTCATGAAAGAGGGAGACTTTATAGACTTTCTGTAA 2749
Query 2776 AGAAACTAAGAAGGGCCTTCTGTTTTTGTCAATTTTATAAAACA 2819
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2750 AGAAACTAAGAACTGCCTTCTGTTTTTGTCAATTTTATAAAACA 2793
> Ahg934677 jgi|Araly1|934677|scaffold_402665.1
Length=2654
Score = 1271 bits (688), Expect = 0.0
Identities = 1849/2393 (77%), Gaps = 146/2393 (6%)
Strand=Plus/Plus
Query 269 GGACGATGCATC-TGTAATCGATGTTCTTCTCA-ATCGCAGGAACAACCCAGAAGCTGCT 326
|||||| || || ||||||||| || ||||| | ||| || ||| |||||| | |||
Sbjct 256 GGACGACGC-TCATGTAATCGAAGTGCTTCT-AGGTCGTAGAAACGACCCAGTCTCAGCT 313
Query 327 CTTCGTTTCTATAATTGGG-CTAGACCATGGCGTGGAAGT-T-T-TGAAGATGGTGACGT 382
|||| | || ||||||| | || || | ||| ||| | | ||||| ||| || ||
Sbjct 314 CTTCAATACTGCAATTGGGTCAAG-CCTTTACGT---AGTCTCTGTGAAGGTGGAGATGT 369
Query 383 CTTCTGGGTACTCATTCATATTCTGGTCAGTTCTCCTGAGACCT-ATGGA-CGTGCAAGT 440
|||||||||||||||||||||||| | || |||||| | | || | || ||||| ||
Sbjct 370 CTTCTGGGTACTCATTCATATTCTCTTTAGCTCTCCTCACA-CTCA-CGATCGTGCCAGC 427
Query 441 GATTTGCTCATACGGTACGTTTCTACGAGCAATCCAACTCCAATGGCAAGTGTTTTGGTC 500
|||||||| || || |||||| | ||||||||||| | ||| |||| | ||||
Sbjct 428 AATTTGCTCGTAATGTTCGTTTC-A--AGCAATCCAACGCTAATTCCAAGCGCAATGGTT 484
Query 501 AGTAAATTGGTGGATTCGGCGAAATCATTTGGGTTTGAAGTCAATTCACGAGCTTTTAAT 560
| || ||||| |||||| | ||| |||| |||||| | | ||||||||||| |||
Sbjct 485 AACAATTTGGTTGATTCGTCTAAAAGGTTTGATTTTGAACTTAGCTCACGAGCTTTCAAT 544
Query 561 TACTTATTGAATGC-T-TATTCTAAAGATAGGCAAACGGATCATGCGGTGGATAT-CGTC 617
||||| |||||||| | ||||| || |||||| || |||| |||| || ||| | | |
Sbjct 545 TACTTGTTGAATGCTTATATTC-GAA-ATAGGCGAATGGATTATGCTGTAGAT-TGCTTT 601
Query 618 AACCAGATGTTGGAACTAGATGTGATTCCATTTT-TTCCATATGTGAA-TAGGACCTTGA 675
|| |||| |||| | | ||||| |||| |||| ||||||||||||| | | || |
Sbjct 602 AATTTGATGGTGGATCGAAATGTGGTTCC-TTTTGTTCCATATGTGAACAATG-TTTTAA 659
Query 676 G-TGCTTTAGTTCAAAGGAATTCGTTA-ACTGAAGCTAAGGA-ACTCTACAGTAGGATGG 732
| | ||||||||| ||| |||| | || | |||||||||||| | | || | || |||||
Sbjct 660 GCT-CTTTAGTTCGAAGTAATTTGATAGA-TGAAGCTAAGGAGA-TTTATAATAAGATGG 716
Query 733 TTGCCATTGGTGTTGATGGTGATAATGTAACAACGCAATTGTTAATGAGAGCTAGTTTGA 792
|| |||||||||| |||||||||||| || ||||| ||||| ||| ||||||||||||
Sbjct 717 TTTTGATTGGTGTTGCTGGTGATAATGTTACGACGCAGTTGTTGATGCGAGCTAGTTTGA 776
Query 793 GAGAAG-AAAAGCCTGCGGAGGCTTTGGAGGTTTTAAGTAGAGCTATTGAG-AGAGGAGC 850
||| || |||||| | |||||| || | |||| || |||| || |||| ||||||||
Sbjct 777 GAG-AGCGAAAGCCCGAAGAGGCTGTGAAAATTTTCAGAAGAGTTA-TGAGTAGAGGAGC 834
Query 851 AGAACCGGATAGTTTACTGTATAGTCTTGCTGTTCAGGCTTG-TTGCAAGACGCTTGATT 909
|||||| ||| |||| ||| ||||||||||||||| || || ||| |||| | ||||
Sbjct 835 AGAACCAGATGGTTTGTTGTTTAGTCTTGCTGTTCAAGC-TGCTTGTAAGATGAAGGATT 893
Query 910 TGGCTATGGCTAATAG-TTTATTGAGAGAGATGAAGGAGAAGAAGTTGTGTGTCCC-G-- 965
||| ||||||| | | ||| |||||||| |||| ||||||| | | ||||||| |
Sbjct 894 TGGTTATGGCT-TTGGATTTGTTGAGAGAAATGAGGGAGAAG--GGAG-GTGTCCCGGCC 949
Query 966 TCGCAGGAAACTTATACTTCTGTGATTTTGGCTTCTGTGAAGCAAGGTAATATGGATGAT 1025
||||||||||| |||||| ||||||| |||||| ||||||| ||||||||||||| ||
Sbjct 950 TCGCAGGAAACGTATACTAGTGTGATTGTGGCTTGTGTGAAGGAAGGTAATATGGAGGAG 1009
Query 1026 GCAAT-TAGATTGAAGGATGAGAT-GTTGAGTGATGGGATATCGATGAATG-TAGTTGCT 1082
|| | || || ||||||||||| |||| || ||||||| |||||| || || |||||
Sbjct 1010 GCGGTGAAGGTT-AAGGATGAGATGGTTG-GTTTTGGGATACCGATGAGTGTTA-TTGCT 1066
Query 1083 GCGACGAGTCTGATCACGGGACACTGCAA-GAACAATGACTT-GGTTAGTGCTTTGGTTT 1140
|| |||||| |||| || ||| ||||| | ||||| || ||| || ||||||| ||
Sbjct 1067 GCAACGAGTTTGATTACTGGATTTTGCAATG-GGAATGAGTTGGGTAAG-GCTTTGGATT 1124
Query 1141 TGTTTGATAAG-ATGGAAAAGGAAGGCCCCTCTCCGAACAGCGTTACT-TTTTCGGTTCT 1198
| ||| || || ||||| ||||||| | ||||| ||| |||| | ||||||||| |
Sbjct 1125 TCTTTAAT-AGAATGGAGGAGGAAGGGCTGGCTCCGGACAAAGTTA-TGTTTTCGGTTAT 1182
Query 1199 GATAGAATGGTTTCGTAAGAACGGGGAAATGGA-AAAGGC-GCTTGA-ATTTTACAAGAA 1255
||| ||||||||| ||||||| ||| ||||| ||| || | |||| | ||||||||
Sbjct 1183 GATCGAATGGTTTTGTAAGAATATGGAGATGGAGAAA-GCTG-TTGAGA-TTTACAAGCG 1239
Query 1256 AATGGAAGTCT-TAGGTCTTACTCCTTCTGTCT-TTCATGTCCACACGATAATTCAAGGG 1313
|| ||| ||| |||| || ||||||| ||| ||| ||||||||| || || |||||
Sbjct 1240 GAT-GAAATCTGTAGGGATTGCTCCTTC-ATCTGTTCTTGTCCACACAATGATCCAAGGA 1297
Query 1314 TGGTTGAAAGGTCAG-AAACATGAAGAGGCACT-GAAACTCTTTGACGAGTCTTTTGAAA 1371
|| ||||||| | || | || |||| ||| || |||| ||||| |||| ||||||||
Sbjct 1298 TGTTTGAAAGCTGAGTCACCA-GAAGCGGCGCTAGAAA-TCTTTAACGACAGTTTTGAAA 1355
Query 1372 CC-GGTCTTGCAAACGTGTTT-GTATGTAACACTATATTATCCTGGTTATGCAAGCAAGG 1429
|| || |||| ||| |||| | ||||||| || || | | |||||||||||||||
Sbjct 1356 CCTGG-ATTGCGCACG-GTTTCATGTGTAACAAGATTTTCTTATTGTTATGCAAGCAAGG 1413
Query 1430 TAA-GACAGACGAAGCTACAGAG-TTATTAAGCAAGATGGAAAGTAGAGGTATTGGA-CC 1486
||| | | || | || ||| || || || || | |||||||| | ||| ||| || ||
Sbjct 1414 TAAGGTC-GATGCTGCGACA-AGCTTTTTGAGGATGATGGAAAACAAAGGGATT-GAGCC 1470
Query 1487 GAATGTAGTTTCTTACAATAACGTGATGCTTGGC-CACTGCAGACA-GAAAAACATGGAC 1544
||||||||||| |||||||||| |||||||| || || |||||| | |||||||||||||
Sbjct 1471 GAATGTAGTTTTTTACAATAACATGATGCTT-GCTCATTGCAGA-ATGAAAAACATGGAC 1528
Query 1545 TTGGCTCGTAT-TGTTTTTTC-AAATATACTGGAAAAGGGTCTA-AAGCCGAATAACTAC 1601
||||||||| | | ||||| || || ||||||||||||||| || |||||||||| |
Sbjct 1529 TTGGCTCGT-TCAATATTTTCGGAA-ATGCTGGAAAAGGGTCTACAA-CCGAATAACTTC 1585
Query 1602 ACGTATTCCATTC-TGATTGATGGATGTTTCAGGAATCATGATGAACAAAACGCTTTGGA 1660
|| ||||||| || |||||||||||| ||||| |||||| |||||||| || |||| |||
Sbjct 1586 ACTTATTCCA-TCTTGATTGATGGATTTTTCAAGAATCAAGATGAACAGAATGCTTGGGA 1644
Query 1661 AGTCGTCAATCATATGACTT-CTTCCAATATT-GAAGTC-AACGGGGTTGTATACCAA-A 1716
|||| ||||||| |||| || |||||||| || |||| | || | || |||| || |
Sbjct 1645 AGTCATCAATCAGATGA-TTGCTTCCAAT-TTCGAAG-CTAATGAAGTCATATA-TAATA 1700
Query 1717 CAATTATCAATGGTTTATGCAAAGTTGGTCAGACATCCAAAG-C-AAGAGAATTGTTGGC 1774
| || ||||||||||| ||||||||||||||||||| |||| | ||||| | |||| ||
Sbjct 1701 CGATCATCAATGGTTTGTGCAAAGTTGGTCAGACATTTAAAGCCAAAGAG-A-TGTT-GC 1757
Query 1775 -AAATATGATCGAAGAAAAACGGTTA-TGTGTTAGTTGCATGAGTTACAATAGCATTATA 1832
|||| |||| ||||||| | | || | | |||||| |||||||||||||||||||
Sbjct 1758 AAAATTTGATAAAAGAAAAGC-GCTATTCCATGGGTTGCACGAGTTACAATAGCATTATA 1816
Query 1833 GATGGATTTTTCAAAGAGGGTGAAATGGATTCTGCGGTTGCAGCATAC-GAAGAGATGTG 1891
||||||||||||||||| ||||| | |||||||| || | ||| ||| || |||||| |
Sbjct 1817 GATGGATTTTTCAAAGAAGGTGACACCGATTCTGCTGTAGAAGCTTACAGA-GAGATGAG 1875
Query 1892 TGGCAATGGTATTTCTCCAAACGTCATAAC-TTATACCAGCTTGATGAATGGGTTATGCA 1950
|| || ||||| || ||||| || |||| || ||||||||||| ||||| || ||||
Sbjct 1876 TGAAAACGGTATATCCCCAAATGTTGTAACCTTC-ACCAGCTTGATCAATGGATTCTGCA 1934
Query 1951 AAAATAACAGAATGGATCAAGCA-TTGGAAATGAGAGACGAAATGAAGAA-CAAAGG-TG 2007
||| |||||||||||||| ||| ||| |||||| | |||||||||| || ||| || |
Sbjct 1935 AAAGTAACAGAATGGATCTAGCTCTTG-AAATGATACACGAAATGAA-AAGCAA-GGATT 1991
Query 2008 TCAAACTCGATATTCCAGCCTATGGTGCTCTTATCGATGGGTTCTGCAAAAGG-AGTAAC 2066
| ||||| ||| |||||||||| ||||| || || || |||||||| |||| | | | ||
Sbjct 1992 TGAAACTTGATGTTCCAGCCTACGGTGCACTAATAGACGGGTTCTGTAAAAAGCA-TGAC 2050
Query 2067 ATGGAAAGCGCATCTGCTCTGTTCTCTGAACTCCTTGAAGAAGGATTGAAT-CCAAGCCA 2125
||| ||| ||||| | |||||||||||||||| || ||| |||||||| | ||||
Sbjct 2051 ATGAAAACCGCATATACTCTGTTCTCTGAACTGCTGGAACTAGGATTGA-TGCCAAATGT 2109
Query 2126 ACCTATATACAACAGCTTGATTTCTGGATTTCGTAATCTGGGAAACATGG-TAGCAGCCC 2184
|| | ||||| | |||||||| ||||| |||||||||||||| |||| | |||||
Sbjct 2110 GTCTGTCTACAATAATTTGATTTCAGGATTCCGTAATCTGGGAAAGATGGAT-GCAGCAA 2168
Query 2185 TTGATTTGTACAAGAAAATGTTGAAAGACGGTCTACGATGTGATCTGGGTACATATACAA 2244
|||| ||||||||||||||| |||| ||||| || | ||||||||| |||||||||||
Sbjct 2169 TTGACTTGTACAAGAAAATGGTGAATGACGGGATAAGTTGTGATCTGTTTACATATACAA 2228
Query 2245 C-ACTGATTGATGGATTGTTGAAAGATGGAAATTTGATCCTGGCCTCTGAGTTGTACACA 2303
| | |||| ||||| ||||| ||||| |||||| | || || |||||||| |||||| |
Sbjct 2229 CGA-TGATCGATGGGTTGTTAAAAGACGGAAATCTAATTCTTGCCTCTGATTTGTACTCG 2287
Query 2304 GAAATGCAGGCGGTGGGTCTTGTCCCTGATGAAAT-CATTTACACAGTAATTGTAAACGG 2362
|| ||| || ||||| |||||||||||||||| | | ||| ||| |||| |||||
Sbjct 2288 GAGTTGCTTGCTTTGGGTATTGTCCCTGATGAAATTC-TGTACGTGGTACTTGTCAACGG 2346
Query 2363 TCTTAGCAAGAAGGGGCAGTTTGTAAAAGTG-GTTAAGATGTTTGAGGAGATGAAGAAGA 2421
|||||| |||||||| |||||||| | || | |||||||| ||||||||||||||||
Sbjct 2347 TCTTAGTAAGAAGGGACAGTTTGTGAGAGCAAGC-AAGATGTTAGAGGAGATGAAGAAGA 2405
Query 2422 ATA-ATGTC-ACTCCGAATGTCCTTATCTACAACGCGGTGATTGCCGGACATTATAGAGA 2479
| | ||| | ||||| ||||| ||||| |||| | || || || |||||| | |||||
Sbjct 2406 A-AGATG-CGACTCCAAATGTGCTTATATACAGTACTGTTATCGCAGGACATCACAGAGA 2463
Query 2480 AGGAAATCTCGATGAGGCTTTTAGACTTCACGATGAGATGCTTGACAAGGGTATTTTACC 2539
|||||||||| ||||||||||||||||||| |||||||||||||| || ||| || |||
Sbjct 2464 AGGAAATCTCAATGAGGCTTTTAGACTTCATGATGAGATGCTTGAGAAAGGTCTTGTACA 2523
Query 2540 CGATGGTGCTACATTTGATATT-CTAGTTAGTGGGCA-AGTCG-GAAACCTCC 2589
|||| | ||| ||| || || || || ||||| | ||| | |||||||||
Sbjct 2524 TGATGATACTATATTCAAT-TTACTCGTGAGTGGA-AGAGTTGAGAAACCTCC 2574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107033588450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5