BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54990.1
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485918 jgi|Araly1|485918|fgenesh2_kg.5__1910__AT3G54990.1 1690 0.0
> Ahg485918 jgi|Araly1|485918|fgenesh2_kg.5__1910__AT3G54990.1
Length=1041
Score = 1690 bits (915), Expect = 0.0
Identities = 1004/1046 (96%), Gaps = 10/1046 (1%)
Strand=Plus/Plus
Query 1 ATGTTGGATCTTAACC-TAAAGATCTTTTCTTCTTATAACG-A-A-GATCAAGATCGGAA 56
|||||||||||||||| |||| |||||||||||||| ||| | | ||||||||||||||
Sbjct 1 ATGTTGGATCTTAACCTTAAA-CTCTTTTCTTCTTATGACGAAGATGATCAAGATCGGAA 59
Query 57 AGTACCATTAATGATCTCAACCACCGGTGAAGAAGAATCTAACTCATCTTCCTCCTCCAC 116
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 60 AGTACCATTAATGATCTCAACCACCGGTGAAGAAGAATCTAACTCCTCTTCCTCCTCCAC 119
Query 117 AACAGACTCTGCAGCGA-GAGATGCTTTCATCGCTTTTGGAATTCTCAAACGCGACGATG 175
|||||| |||||||| | |||||||||||||| |||||||||||||||||||||| ||||
Sbjct 120 AACAGATTCTGCAGC-AGGAGATGCTTTCATCACTTTTGGAATTCTCAAACGCGATGATG 178
Query 176 ACCTTGTtcctcctcctcctcctcctcctcATAAAGAAACAGGAGATCTCTTTCCGGTGG 235
|| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 ACGTTG-T--TCCTCCTCCTCCTCCTCCTCATAAAGAAACAGGAGATCTCTTTCCGGTGG 235
Query 236 TGGCTGATGCTCGTCGGAATATAGAATTCTCCGTGGAAGACAGTCACTGGTTGAATCTTT 295
|||||||||||||||||||||| || |||||| | || ||||||||||||||||||||||
Sbjct 236 TGGCTGATGCTCGTCGGAATATTGAGTTCTCCATCGAGGACAGTCACTGGTTGAATCTTT 295
Query 296 CTTCTTTACAAAGAAATACACAGAAAATGGTGAAGAAGAGCAGAAGAGGACCAAGGTCTC 355
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 296 CTTCTTTACAAAGAAATACACAGAAAATGGTGAAGAAAAGCAGAAGAGGACCAAGGTCAC 355
Query 356 GTAGCTCCCAATATCGTGGCGTCACTTTTTACCGTCGCACCGGTCGTTGGGAATCTCATA 415
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GCAGCTCCCAATATCGTGGCGTCACTTTTTACCGTCGCACCGGTCGTTGGGAATCTCATA 415
Query 416 TTTGGGATTGTGGAAAGCAAGTTTATTTGGGCGGGTTTGATACTGCTTACGCAGCAGCAA 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TTTGGGATTGTGGAAAGCAAGTTTATTTGGGCGGGTTTGATACTGCTTACGCAGCAGCAA 475
Query 476 GGGCTTACGACCGAGCTGCTATCAAATTCCGTGGTCTCGATGCAGACATCAATTTCGTCG 535
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GGGCGTACGACCGAGCTGCTATCAAATTCCGTGGTCTCGATGCAGACATCAATTTCGTCG 535
Query 536 TGGATGATTATAGGCATGACATCGATAAGATGAAGAATTTAAATAAGGTGGAGTTCGTGC 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TGGATGATTATAGGCATGACATCGATAAGATGAAGAATTTAAATAAGGTGGAGTTCGTGC 595
Query 596 AAACACTTAGGCGAGAGAGTGCGAGTTTCGGAAGAGGAAGTTCCAAATACAAAGGCTTGG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AAACACTTAGGCGAGAGAGTGCGAGTTTCGGAAGAGGAAGTTCCAAATACAAAGGCTTGG 655
Query 656 CTCTTCAAAAATGCACCCAATTCAAAACTCATGATCAGATTCATCTCTTCCAAAACAGGG 715
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 656 CTCTTCAAAAATGCACCCAATTCAAAACTCATGATCAGATTCATCTCTTTCAAAACAGGG 715
Query 716 GATGGGATGCAGCAGCAATAAAATACAATGAGTTGGGAAAGGGAGAAGGAGCCATGAAGT 775
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 716 GATGGGATGCAGCAGCAATAAAATACAATGAGGTGGGAAAGGGAGAAGGGGCCATGAAGT 775
Query 776 TTGGTGCCCATATCAAAGGAAATGGTCACAATGATCTTGAACTAAGTCTCGGAATTTCAT 835
|||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||| |
Sbjct 776 TTGGTGCCCATATCAAAGGAAATGCTCACAGTGATCTTGAACTAAGTCTTGGAATTTCTT 835
Query 836 CATCATCGGAAAGTATAAAGTTGACAACAGGCGATTACTATAAGGGTATCAATCGGTCCA 895
|||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 836 CATCATCGGAAAATATAAAGTTGACAACGGGAGATTACTATAAGGGTATCAATCGGTCCA 895
Query 896 CGATGGGTTTATACGGTAAGCAATCATCGATATTTTTACCCATGGCAACCATGAAACCTC 955
||||||||||||||||||||||||||||||||| |||||| ||||| || ||||||||||
Sbjct 896 CGATGGGTTTATACGGTAAGCAATCATCGATATATTTACCTATGGCGACAATGAAACCTC 955
Query 956 TGAAGACAGTTGCAGCATCATCAGGATTCCCTTTTATCAGCATGACAAGTTCCTCTTCCT 1015
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 956 TGAAGACAGTTGCAGCATCATCAGGATTCCCATTTATCAGCATGACCAGTTCCTCTTCCT 1015
Query 1016 CCATGTCCAATTGTTTTGATCCATAG 1041
||||||||||||||||||||||||||
Sbjct 1016 CCATGTCCAATTGTTTTGATCCATAG 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38732883672
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5