BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55000.1
Length=1099
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938428 jgi|Araly1|938428|scaffold_502619.1 1306 0.0
Ahg938429 jgi|Araly1|938429|scaffold_502620.1 950 0.0
> Ahg938428 jgi|Araly1|938428|scaffold_502619.1
Length=824
Score = 1306 bits (707), Expect = 0.0
Identities = 770/801 (96%), Gaps = 1/801 (0%)
Strand=Plus/Plus
Query 105 ATGGACGATTATACAAGAGAGATGATGGATCTCAAGACTTTGGTCACTCGAACCCTAGAG 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 ATGGACGATTATACAAGAGAGATGATGGATCTCAAGACTTTGGTCACTCGAACCCTAGAG 81
Query 165 AAGAAAGGTGTCCTCGCTAAGATCCGGGCTGAGCTCCGTGCAAGTGTGTTTGAAGCAATT 224
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 82 AAGAAAGGTGTTCTCGCTAAGATCCGGGCTGAGCTCCGTGCAAGTGTGTTTGAGGCAATT 141
Query 225 GAAGAAGAGGATAGAGTGATAGAGAACAATGAAGGACCGCCTCCAGCTCTGTTGGGAAGC 284
||||||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||
Sbjct 142 GAAGAAGAGGATAGAGTGATAGATAACAACGAAGGACTTCCTCCAGCTTTGTTGGGAAGC 201
Query 285 TGTAATGATCGTGCAAGGAAGCTTCATGCTTCTCCTTCAGGAAGGTTACTATCTGCGTTG 344
|| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 202 TGCAATGAGCGTGCAAGGAAGCTTCATGCTTCTCCTTCAGGCAGGTTACTATCTGCGTTG 261
Query 345 ATTTGTGAATACTTGGACTGGGCACAACTTAATCACACGCTCATAGTTTATCAACCTGAA 404
||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||
Sbjct 262 ATTTGTGAATATTTGGACTGGGCGCAACTAAATCACACGCTCAAAGTTTATCAACCTGAA 321
Query 405 AGCAATTTGCCAAAAGATTCGTGGAAGTCTGAGTTACGCGACTTTAATAGCAACAATGGT 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 AGCAATTTGCCAAAAGATTCGTGGAAGTCTGAGTTACGCGACTTTAATAGCAACAATGGT 381
Query 465 TTTGAGCTCAATAGAAATGGAGATAGTGGACCACTCCTTCTCGATGTTCTTGAAGGGTTC 524
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 382 TTTGAGCTCAACAGAAATGGAGATAGTGGACCGCTCCTTCTCGATGTTCTTGAAGGATTC 441
Query 525 TTGAAGTTTGAGAGCATGACGCAGGGCATGGGTAGTAGTTCAAGGAGAGATTCAGAAACA 584
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 442 TTGAAGTTTGAGAGCATGACGCAGGGCATGGGTGGTAGTTCAAGGAGAGATTCAGAAACA 501
Query 585 GAGTCGTCATCAAGCCTTGAGTCCAGAAATCCTCCTCGCAGATCATCTGCTTCTGATAGC 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 GAGTCGTCATCAAGCCTTGAGTCCAGAAATCCTCCTCGCAGATCATCTGCTTCTGATAGC 561
Query 645 TTACCTCCTCAACGAAGGCCGGTTTCTGCATCTCAAGCATCGGATAGAAGAGCCGGGTTG 704
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 TTACCTCCTCAACGGAGGCCGGTTTCTGCATCTCAAGCATCGGATAGAAGAGCCGGGTTG 621
Query 705 TCTACATCTGGGTACAGAAAAGATGAATTCAACTGGAGACAAGGTAACCAAGATACACAT 764
|||||||||||||||||||||||||| ||||| |||||||||||||| |||||| || ||
Sbjct 622 TCTACATCTGGGTACAGAAAAGATGACTTCAATTGGAGACAAGGTAATCAAGATGCAAAT 681
Query 765 GAAGAGGTAACAAGAGCTTCAGCGGCGCTGGAAAATCTACAGCTTGATAGGAAAACTCGG 824
||||||||||| |||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 682 GAAGAGGTAACGAGAGCTTCGGCTGCGCTGGAAAATCTTCAGCTTGATAGGAAAACTCGG 741
Query 825 AACTTAACATCGTCTTGGAGGAATGTGAGGGATGGAACAAATGAAGAAGAAGGGAGAGAT 884
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 742 AACTTGACATCGTCTTGGAGGAATGTGAGGGATGGAACAAATGAAGAAGAAGGGAGGGAT 801
Query 885 TGATTTAGGCTTTGG-ATAAA 904
||||||||||||||| |||||
Sbjct 802 TGATTTAGGCTTTGGGATAAA 822
> Ahg938429 jgi|Araly1|938429|scaffold_502620.1
Length=811
Score = 950 bits (514), Expect = 0.0
Identities = 709/802 (88%), Gaps = 17/802 (2%)
Strand=Plus/Plus
Query 105 ATGGACGATTATACAAGAGAGATGATGGATCTCAAGACTTTGGTCACTCGAACCCTAGAG 164
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 21 ATGGACGATTATACAAGAGAGATGATGGATCTCAAGACCTTAGTCACTCGAACCCTAGAG 80
Query 165 AAGAAAGGTGTCCTCGCTAAGATCCGGGCTGAGCTCCGTGCAAGTGTGTTTGAAGCAATT 224
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 81 AAGAAAGGTGTTCTCGCTAAGATCCGGGCTGAGCTCCGTGCGAGTGTGTTTGAGGCAATT 140
Query 225 GAAGAAGAGGATAGAGTGATAGAGAACAATGAAGGACCGCCTCCAGCTCTGTTGGGAAGC 284
||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||
Sbjct 141 GAAGAAGAGGATAGAGTGATAGAGAACAACGAAGGACTTCCTCCAGCTTTGTTGGGAAGC 200
Query 285 TGTAATGATCGTGCAAGGAAGCTTCATGCTTCTCCTTCAGGAAGGTTACTATCTGCGTTG 344
|||||||| ||||||||| |||||||||||||||||||||| ||||| |||||||| |||
Sbjct 201 TGTAATGAGCGTGCAAGGCAGCTTCATGCTTCTCCTTCAGGCAGGTTGCTATCTGCATTG 260
Query 345 ATTTGTGAATACTTGGACTGGGCACAACTTAATCACACGCTCATAGTTTATCAACCTGAA 404
||||||||||| ||||||||||| ||||| ||||||||||||| |||||||||||| |||
Sbjct 261 ATTTGTGAATATTTGGACTGGGCGCAACTCAATCACACGCTCAAAGTTTATCAACCAGAA 320
Query 405 AGCAATTTGCCAAAAGATTCGTGGAAGTCTGAGTTACGCGACTTTAATAGCAACAATGGT 464
|||||||| |||||||||| |||||||||||| |||| ||||||| || |||| |||||
Sbjct 321 TGCAATTTGGCAAAAGATTCTTGGAAGTCTGAGGTACGTGACTTTAGTATCAACTATGGT 380
Query 465 TTTGAGCTCAATAGAAATGGAGATAGTGGACCACTCCTTCTCGATGTTCTTGAAGGGTTC 524
| ||||||||| ||||||||||||| | |||| || ||||| |||||||||||||| |||
Sbjct 381 TATGAGCTCAACAGAAATGGAGATAATAGACCGCTTCTTCTAGATGTTCTTGAAGGATTC 440
Query 525 TTGAAGTTTGA-GAGCATGACGCAGGGCATGGGTAGTAGTTCAAGGAGAGATTCAGAAAC 583
||||||||||| || ||||||||||| ||||||| |||||||||||||||| ||||||||
Sbjct 441 TTGAAGTTTGAGGA-CATGACGCAGGTCATGGGTGGTAGTTCAAGGAGAGAGTCAGAAAC 499
Query 584 AGAGTCGTCATCAAGCCTTGAGTCCAGAAATCCTCCTCGCAGATCATCTGCTTCTGATAG 643
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 500 GGAGTCGTCATCAAGCCTTGACACCAGAAATCCTCCTCGCAGATCATCTGCTTCTGATAG 559
Query 644 CTTACCTCCTCAACGAAGGCCGGTTTCTGCATCTCAAGCATCGGATAGAAGAGCCGGGTT 703
|||||||||||||||| |||||||||||||||||||| |||| | | ||||||
Sbjct 560 CTTACCTCCTCAACGACGGCCGGTTTCTGCATCTCAATCATC--A--G--GAGCCG---- 609
Query 704 GTCTACATCTGGGTACAGAAAAGATGAATTCAACTGGAGACAAGGTAACC-AAGATACAC 762
|||| || |||||||||||||| ||| ||| |||||| | | | | |||||| |
Sbjct 610 --CTACCTCAGGGTACAGAAAAGACGAAAACAATTGGAGATATGACA-CTGAAGATATGC 666
Query 763 ATGAAGAGGTAACAAGAGCTTCAGCGGCGCTGGAAAATCTACAGCTTGATAGGAAAACTC 822
||||| || | ||||||||| | || ||||||||||| ||||| || ||||||||||
Sbjct 667 CGGAAGAAGTGATGAGAGCTTCAACAGCACTGGAAAATCTTCAGCTCGACAGGAAAACTC 726
Query 823 GGAACTTAACATCGTCTTGGAGGAATGTGAGGGATGGAACAAATGAAGAAGAAGGGAGAG 882
||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 727 GGAACCTAACATCGTCTTGGAGGAATGTGAAGGATGGAACAAGTGAAGAAGAAGGGAAAG 786
Query 883 ATTGATTTAGGCTTTGGATAAA 904
|||||| | || ||| | ||||
Sbjct 787 ATTGATAT-GGATTTCGTTAAA 807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40944012858
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5