BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55005.1
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938429 jgi|Araly1|938429|scaffold_502620.1 1286 0.0
Ahg938428 jgi|Araly1|938428|scaffold_502619.1 961 0.0
> Ahg938429 jgi|Araly1|938429|scaffold_502620.1
Length=811
Score = 1286 bits (696), Expect = 0.0
Identities = 772/809 (95%), Gaps = 3/809 (0%)
Strand=Plus/Plus
Query 161 TTGGCGGTAAGAACAATGGACGATTATACAAGAGAGATGATGGATCTCAAGACCTTAGTC 220
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 TTGGCGGTGAGATCAATGGACGATTATACAAGAGAGATGATGGATCTCAAGACCTTAGTC 65
Query 221 ACTCGAACCCTAGAGAAGAAAGGTGTTCTCGCTAAGATCCGGGCTGAACTCCGTGCAAGT 280
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 66 ACTCGAACCCTAGAGAAGAAAGGTGTTCTCGCTAAGATCCGGGCTGAGCTCCGTGCGAGT 125
Query 281 GTGTTTGAGGCAATCGAAGAAGAGGATAGAGTGATAGAGAACAATGAAGGACTGCCTCCA 340
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 126 GTGTTTGAGGCAATTGAAGAAGAGGATAGAGTGATAGAGAACAACGAAGGACTTCCTCCA 185
Query 341 GCTTTGTTGGGAAGCTGCAATGATCGTGCAAGGCAGCTTCATGCTTCTCCTTCAGGCAGG 400
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 186 GCTTTGTTGGGAAGCTGTAATGAGCGTGCAAGGCAGCTTCATGCTTCTCCTTCAGGCAGG 245
Query 401 TTGCTATCTGCATTGATTTGTGAATATTTGGACTGGGCGCAATTAAATCACACGCTTAAA 460
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct 246 TTGCTATCTGCATTGATTTGTGAATATTTGGACTGGGCGCAACTCAATCACACGCTCAAA 305
Query 461 GTTTATCAACCAGAATGCAATTCGGCAAAAGATTCTTGGAAGTCTGAGATACGTGACTTT 520
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 306 GTTTATCAACCAGAATGCAATTTGGCAAAAGATTCTTGGAAGTCTGAGGTACGTGACTTT 365
Query 521 AGTATCAACAATGGTTATGAGCTCAACAGAAATGAAGATAGTAGACCGCTTCTTCTGGAT 580
||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||| |||
Sbjct 366 AGTATCAACTATGGTTATGAGCTCAACAGAAATGGAGATAATAGACCGCTTCTTCTAGAT 425
Query 581 GTTCTTGAAGGATTCTTGAAGTTCGAGAACATGACGCAGGTCATGGGTGGTAGTTCAAGG 640
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 426 GTTCTTGAAGGATTCTTGAAGTTTGAGGACATGACGCAGGTCATGGGTGGTAGTTCAAGG 485
Query 641 AGAGAGTCAGAAACCGAGTCGTCATTAAGCCTTGACACCAGAAATCCTCCTCGCAGATCA 700
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 486 AGAGAGTCAGAAACGGAGTCGTCATCAAGCCTTGACACCAGAAATCCTCCTCGCAGATCA 545
Query 701 TCTGCTTCTGATAGCTTACCTCATCAACGACGGTCGGTTTCTGCATCTCAAGCATCGGGA 760
|||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| |||
Sbjct 546 TCTGCTTCTGATAGCTTACCTCCTCAACGACGGCCGGTTTCTGCATCTCAATCATCAGGA 605
Query 761 GCCGCTACCTCAGGGTACAGAAAAGACGAGAGCAATTGGAGATATGACACTGAAGATATG 820
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 606 GCCGCTACCTCAGGGTACAGAAAAGACGAAAACAATTGGAGATATGACACTGAAGATATG 665
Query 821 CCGGAAGAAGTCATGAGAGCCTCAACAGCACTTGAAAATCTTCAGCTAGACAGGAAAACT 880
||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 666 CCGGAAGAAGTGATGAGAGCTTCAACAGCACTGGAAAATCTTCAGCTCGACAGGAAAACT 725
Query 881 CGGAACCTAACATCGTCTTGGAGGAATGTGAAGGATGGAACAAGTGAAGAAGAAGAAGGG 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 726 CGGAACCTAACATCGTCTTGGAGGAATGTGAAGGATGGAACAAGTGAAGAAGAAG--GG- 782
Query 941 AAAGATTGATAAGGCTTTCGTTAAAATCC 969
||||||||||| || ||||||||||||||
Sbjct 783 AAAGATTGATATGGATTTCGTTAAAATCC 811
> Ahg938428 jgi|Araly1|938428|scaffold_502619.1
Length=824
Score = 961 bits (520), Expect = 0.0
Identities = 713/804 (89%), Gaps = 22/804 (3%)
Strand=Plus/Plus
Query 171 GAACAATGGACGATTATACAAGAGAGATGATGGATCTCAAGACCTTAGTCACTCGAACCC 230
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 17 GAACAATGGACGATTATACAAGAGAGATGATGGATCTCAAGACTTTGGTCACTCGAACCC 76
Query 231 TAGAGAAGAAAGGTGTTCTCGCTAAGATCCGGGCTGAACTCCGTGCAAGTGTGTTTGAGG 290
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 77 TAGAGAAGAAAGGTGTTCTCGCTAAGATCCGGGCTGAGCTCCGTGCAAGTGTGTTTGAGG 136
Query 291 CAATCGAAGAAGAGGATAGAGTGATAGAGAACAATGAAGGACTGCCTCCAGCTTTGTTGG 350
|||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 137 CAATTGAAGAAGAGGATAGAGTGATAGATAACAACGAAGGACTTCCTCCAGCTTTGTTGG 196
Query 351 GAAGCTGCAATGATCGTGCAAGGCAGCTTCATGCTTCTCCTTCAGGCAGGTTGCTATCTG 410
||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 197 GAAGCTGCAATGAGCGTGCAAGGAAGCTTCATGCTTCTCCTTCAGGCAGGTTACTATCTG 256
Query 411 CATTGATTTGTGAATATTTGGACTGGGCGCAATTAAATCACACGCTTAAAGTTTATCAAC 470
| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 257 CGTTGATTTGTGAATATTTGGACTGGGCGCAACTAAATCACACGCTCAAAGTTTATCAAC 316
Query 471 CAGAATGCAATTCGGCAAAAGATTCTTGGAAGTCTGAGATACGTGACTTTAGTATCAACA 530
| ||| |||||| | |||||||||| |||||||||||| |||| ||||||| || |||||
Sbjct 317 CTGAAAGCAATTTGCCAAAAGATTCGTGGAAGTCTGAGTTACGCGACTTTAATAGCAACA 376
Query 531 ATGGTTATGAGCTCAACAGAAATGAAGATAGTAGACCGCTTCTTCTGGATGTTCTTGAAG 590
|||||| ||||||||||||||||| ||||||| ||||||| ||||| |||||||||||||
Sbjct 377 ATGGTTTTGAGCTCAACAGAAATGGAGATAGTGGACCGCTCCTTCTCGATGTTCTTGAAG 436
Query 591 GATTCTTGAAGTTCGAGAACATGACGCAGGTCATGGGTGGTAGTTCAAGGAGAGAGTCAG 650
||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| ||||
Sbjct 437 GATTCTTGAAGTTTGAGAGCATGACGCAGGGCATGGGTGGTAGTTCAAGGAGAGATTCAG 496
Query 651 AAACCGAGTCGTCATTAAGCCTTGACACCAGAAATCCTCCTCGCAGATCATCTGCTTCTG 710
|||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 497 AAACAGAGTCGTCATCAAGCCTTGAGTCCAGAAATCCTCCTCGCAGATCATCTGCTTCTG 556
Query 711 ATAGCTTACCTCATCAACG-ACGGTCGGTTTCTGCATCTCAAGCATCGG---GA-G--CC 763
|||||||||||| |||||| | || |||||||||||||||||||||||| || | ||
Sbjct 557 ATAGCTTACCTCCTCAACGGA-GGCCGGTTTCTGCATCTCAAGCATCGGATAGAAGAGCC 615
Query 764 G------CTACCTCAGGGTACAGAAAAGACGAGAGCAATTGGAGATATGACACTGAAGAT 817
| |||| || |||||||||||||| || |||||||||| | | | | |||||
Sbjct 616 GGGTTGTCTACATCTGGGTACAGAAAAGATGACTTCAATTGGAGACAAGGTAATCAAGAT 675
Query 818 ATGCCG--GAAGAAGTCATGAGAGCCTCAACAGCACTTGAAAATCTTCAGCTAGACAGGA 875
|| ||||| || | |||||| || | || || |||||||||||||| || ||||
Sbjct 676 --GCAAATGAAGAGGTAACGAGAGCTTCGGCTGCGCTGGAAAATCTTCAGCTTGATAGGA 733
Query 876 AAACTCGGAACCTAACATCGTCTTGGAGGAATGTGAAGGATGGAACAAGTGAAGAAGAAG 935
||||||||||| | |||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 734 AAACTCGGAACTTGACATCGTCTTGGAGGAATGTGAGGGATGGAACAAATGAAGAAGAAG 793
Query 936 A-AGGGAAAGATTGATAAGGCTTT 958
||||| |||| || ||||||
Sbjct 794 GGAGGGATTGATT--TA-GGCTTT 814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42430806621
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5