BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55020.1
Length=2941
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324032 jgi|Araly1|324032|fgenesh1_pm.C_scaffold_5001576 3663 0.0
Ahg482947 jgi|Araly1|482947|fgenesh2_kg.4__2007__AT2G39280.1 1934 0.0
Ahg897524 jgi|Araly1|897524|Al_scaffold_0005_1490 1546 0.0
> Ahg324032 jgi|Araly1|324032|fgenesh1_pm.C_scaffold_5001576
Length=2478
Score = 3663 bits (1983), Expect = 0.0
Identities = 2171/2259 (96%), Gaps = 23/2259 (1%)
Strand=Plus/Plus
Query 199 ATGAGGAGCGTTGCCGCCGCCGCCgctgctgctgctgctgctTCTAAGCCTTC-TAATCC 257
|||||||||||| || |||||||| ||||||||||||||||||||||| || ||||||
Sbjct 1 ATGAGGAGCGTT-TCG--GCCGCCGCCGCTGCTGCTGCTGCTTCTAAGCC-TCTTAATCC 56
Query 258 TCTCGTCGCCTTTGAGCACAAGAGGGATGCATACGGATTTCCTGTCAGACCTCAACATGT 317
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 57 TCTCGTCGCCTTCGAGCACAAGAGGGATGCATATGGATTTCCTGTCAGACCTCAACATGT 116
Query 318 GCAGAGATACAGAGAATATGCTGATATTTACAAGGAAGAAGAAGAAGAAAGGTCGGACAG 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 GCAGAGATACAGAGAATATGCTGATATTTACAAGGAAGAAGAAGAAGAAAGGTCGGACAG 176
Query 378 GTGGAGCAGTTTCTTGGAAGATCATGTTGAATCGACTGAGTTACCTACAAACGGATCTTC 437
||||| ||||||||||| ||||||||| |||||||||||||||||| |||||||||| ||
Sbjct 177 GTGGAACAGTTTCTTGGTAGATCATGTCGAATCGACTGAGTTACCTGCAAACGGATCATC 236
Query 438 TGAAAATATTCACGCACCGTTTAGTGAAAGTGAGAAGGAAAAAGAAAAAGAATTAAACAA 497
|||||||| || ||||| | ||||||||||||||||||||||||||| |||||||||||
Sbjct 237 TGAAAATAGCCATGCACCATCTAGTGAAAGTGAGAAGGAAAAAGAAAAGGAATTAAACAA 296
Query 498 GGGGCCTGGTGAAGATCTGCATACTGACAAGTTAGGTTCTGATGTAACTCCTGATAATGC 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GGGGCCTGGTGAAGATCTGCATACTGACAAGTTAGGTTCTGATGTAACTCCTGATAATGC 356
Query 558 CAGTGAAGAAGAAGGACACCCCGATGCAGAGAAGAATGTTCACAGAGTGCAATTATGGAC 617
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 AAGTGAAGAAGAAGGACACCCCGATGCAGAGAAGAATGTTCACAGAGTGCAATTATGGAC 416
Query 618 TGAGATCAGACCGTCTTTACGATCAATTGAAGACTTGATGAGCATCCGTGTCAAGAAGAA 677
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TGAGATCAGACCATCTTTACGATCAATTGAAGACTTGATGAGCATCCGTGTCAAGAAGAA 476
Query 678 GGGGGATTTATCAAAAAGCGAGCAAGAGGCTCCGAAGGTGAAGAT-TTCACCTTCATTTG 736
||| ||||||||||||| |||||||||||||| ||| ||||| || | |||||||||| |
Sbjct 477 GGGAGATTTATCAAAAATCGAGCAAGAGGCTCTGAAAGTGAA-ATCTCCACCTTCATTCG 535
Query 737 ATGATGCCAAATCTTCCAAGGGAGCATCTGATATTGATTCTGAAGACGAGTTCTATGATG 796
|||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 536 ATGATGCCAAATCTGCCAAGGGAGCATCTGAGAATGATTCTGAAGACGAGTTCTATGATG 595
Query 797 TTGAGAGGTCCGATGTTCAGGATGGTTCTTCTTCAGATGGTACAGGTGTCTCTGGTATCC 856
|||||||||| ||||||||||||||||| ||||||||||||||| |||||||||| || |
Sbjct 596 TTGAGAGGTCGGATGTTCAGGATGGTTCGTCTTCAGATGGTACAAGTGTCTCTGGCATTC 655
Query 857 CTGTTGCTGCTGATGCAAGTCCACTGTCTACATGTCCTTGGAAGGAAGAACTTGAAGTGC 916
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CTGTTGCTCCTGATGCAAGTCCACTGTCTACATGTCCTTGGAAGGAAGAACTTGAAGTGC 715
Query 917 TGATTCGCGGCGGTGTACCTATGGCTCTGAGGGGAGAGTTATGGCAAGCATTCGTGGGCG 976
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 716 TGATTCGCGGCGGTGTACCTATGGCTCTGAGGGGGGAGTTATGGCAAGCATTTGTGGGTG 775
Query 977 TGAGGAAACGACGATGCAAGGATTATTATCAAAACCTTCTTGCAGCAGATGGTTCTGTAA 1036
||||||||||||| |||||||||||||| |||||||||||||| |||||| |||||||||
Sbjct 776 TGAGGAAACGACGCTGCAAGGATTATTACCAAAACCTTCTTGCTGCAGATAGTTCTGTAA 835
Query 1037 ACACCATAGAGCAAGAGGATATGCAGCATGTTGATGATAAAGGTTCAAGTACAGAATCTA 1096
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 836 ACACCATAGAGCAAGAGGATATGCAGCATGTTGATGATAAAGGTTCAATTACAGAATCTA 895
Query 1097 TTGCTGTTGTGGAAAAATGGAAAGGACAGATAGAAAAGGACTTACCTCGGACATTTCCTG 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TTGCTGTTGTGGAAAAATGGAAAGGACAGATAGAAAAGGACTTACCTCGGACATTTCCTG 955
Query 1157 GTCATCCTGCTCTAGATGATGATGGTAGAAATGCTCTACGGCGTTTGCTTACTGCTTATG 1216
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GTCATCCTGCTCTGGATGATGATGGTAGAAATGCTCTACGGCGTTTGCTTACTGCTTATG 1015
Query 1217 CTAGGCATAATCCTTCTGTAGGATACTGTCAGGCTATGAATTTCTTTGCTGCGCTTTTAT 1276
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CTAGGCATAATCCTTCTGTTGGATACTGTCAGGCTATGAATTTCTTTGCTGCGCTTTTAT 1075
Query 1277 TGCTTTTGATGCCAGAAGAAAATGCCTTTTGGGCACTGATAGGACTCATTGATGACTACT 1336
||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||
Sbjct 1076 TGCTTTTGATGCCAGAAGAAAATGCCTTTTGGGCACTTACAGGACTTATTGATGACTACT 1135
Query 1337 TCAATGGTTATTATTCAGAAGAAATGATAGAGTCTCAGGTTGATCAACTAGTTCTGGAGG 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 TCAATGGTTATTATTCAGAAGAAATGATAGAGTCTCAGGTTGATCAACTAGTTCTGGAGG 1195
Query 1397 AGTTAGTTCGAGAAAGATTTCCTAAATTGGTTCATCATCTGGATTATCTTGGAGTGCAAG 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 AGTTAGTTCGAGAAAGATTTCCTAAATTGGTTCATCATCTGGATTATCTTGGAGTGCAAG 1255
Query 1457 TGGCTTGGGTTACAGGGCCATGGTTTCTTTCCATCTTCATGAATATGCTTCCATGGGAAA 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TGGCTTGGGTTACAGGGCCATGGTTTCTTTCCATCTTCATGAATATGCTTCCATGGGAAA 1315
Query 1517 GTGTTCTTAGAGTCTGGGATGTGCTTCTCTTTGAAGGAACTCGTGTTATGCTTTTCAGAA 1576
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1316 GTGTTCTTAGAGTCTGGGATGTGCTTCTCTTTGAGGGAACTCGTGTTATGCTTTTCAGAA 1375
Query 1577 CAGCACTCGCATTGATGGAACTATATGGTCCTGCATTAGTTACTACGAAGGATGCTGGAG 1636
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 CTGCACTCGCATTGATGGAACTATATGGTCCTGCATTAGTTACTACGAAGGATGCTGGAG 1435
Query 1637 ACGCTGTTACTTTGCTACAATCACTGACTGGATCAACATTTGATAGCAGCCAGCTAGTTT 1696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 ACGCTGTTACTTTGCTACAATCACTGACTGGATCAACATTTGATAGCAGCCAGCTAGTTT 1495
Query 1697 TAACTGCTTGCATGGGTTACCAAAATGTACATGAAATTAGATTGCAAGAATTGCGAAGCA 1756
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1496 TAACTGCTTGCATGGGTTACCAAAATGTACACGAAATTAGATTGCAGGAATTGCGAAGCA 1555
Query 1757 AGCATAGGCCAGCTGTGATCGCTGCACTTGAGGAAAGGTCAAAGGGGCTTCAAGCGTGGA 1816
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 1556 AGCATAGGCCAGCTGTGATAGCTGCACTTGAAGAAAGATCAAAGGGGCTTCAAGCTTGGA 1615
Query 1817 GAGATTCTAAGGGACTTGCCTCCAAATTATATAATTTTAAGCAAGACCCAAAATCTGTTT 1876
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 GGGATTCTAAGGGCCTTGCCTCCAAATTATATAATTTTAAGCAAGACCCAAAATCTGTTC 1675
Query 1877 TGGTGGATAGCAAAGCCTCATTGTCAAATGGGAGTTTGTCTCGATCTGAGTCAGGATCAA 1936
|||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 TGGTGGATGGAAAAGTCTCATTGTCAAATGGGAGTTTGTCTCGATCTGAGTCAGGATCAA 1735
Query 1937 GTAATGCAGATGAAGTGTTGGTTAGCCTAACTGGGGATGGGGAGGTAGATTCTGTTCAAG 1996
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 GTAATGCTGATGAAGTGTTGGTTAGCCTAACTGGGGATGGGGAGGTAGATTCTGTTCAAG 1795
Query 1997 ATCTTCAAGCGCAGGTTCTGTGGTTGAAGGCTGAACTCTGCAAGTTGCTTGAGGAGAAAC 2056
||||||||||||||| ||| || || || |||||||||||||||||||||
Sbjct 1796 ATCTTCAAGCGCAGG--CTG------AA--CT---CT--GCAAGTTGCTTGAGGAGAAAC 1840
Query 2057 GATCAGCTCTACTTAGAGCTGAAGAATTGGAGATTGCTCTCATGGAGATAGTAAAGGAAG 2116
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1841 GATCAGCTCTACTTAGAGCTGAAGAGTTGGAGATTGCTCTCATGGAGATAGTAAAGGAAG 1900
Query 2117 ACAATCGGCGTCAATTGAGTGCCAAGGTCGAACAGTTAGAGCAAGAAATGGCCGAAGTTC 2176
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1901 ACAATCGGCGTCAATTGAGTGCCAAGGTCGAACAGTTAGAGCAAGAGATGGCCGAAGTTC 1960
Query 2177 AGAGACTCCTCTCTGATAAGCAGGAACAAGAAGGTGCAATGCTACAGGTCTTGATGCGGG 2236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1961 AGAGACTCCTCTCTGATAAGCAGGAACAAGAAGGTGCAATGCTACAGGTCTTGATGCGGG 2020
Query 2237 TGGAGCAAGAACAGAAGGTAACAGAAGATGCACGAATATTTGCTGAGCAGGATGCAGAAG 2296
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2021 TGGAGCAAGAACAGAAGGTAACAGAAGATGCACGAAGATTTGCTGAGCAGGATGCAGAAG 2080
Query 2297 CGCAGAGATATGCTGCTCAAGTCTTGCAGGAAAAATACGAGGAAGCTGTTGCTGCACTGG 2356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2081 CGCAGAGATATGCTGCTCAAGTCTTGCAGGAAAAATACGAGGAAGCTGTTGCTGCACTGG 2140
Query 2357 CTGAAATGGAGAAGAGAGCAGTGATGGCAGAGTCCATGCTCGAGGCAACTTTGCAGTATC 2416
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2141 CTGAAATGGAGAAGAGAGCAGTGATGGCAGAGTCCATGCTCGAGGCGACTTTGCAGTATC 2200
Query 2417 AATCTGGCCAACTCAAAGCACAACCTTCACCACGAACCT 2455
||||||| ||||||||||||||||||||||||| |||||
Sbjct 2201 AATCTGGGCAACTCAAAGCACAACCTTCACCAC-AACCT 2238
Score = 291 bits (157), Expect = 3e-77
Identities = 178/188 (95%), Gaps = 1/188 (1%)
Strand=Plus/Plus
Query 2445 ACCACGAACCTCCTCCAAGCAGGATCAGTTTGCTAGCACGGCCATTTGGACTAGGGTGGC 2504
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2292 ACCA-GAACCTCCTCCAAGCAGGATCAGTTTGCTAGCACGGCCATTTGGACTAGGGTGGC 2350
Query 2505 GCGACAAGAACAAGAACACAACACCTGAAAAATCTCCGGAGCATGTTAATGACGAGAAGC 2564
| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 2351 GAGACAAGAACAAGAACACAACACCTGAAAAAACTACGGAGCATGTTAATGACGAGAAGC 2410
Query 2565 AATCATCAACAGAGGCAAAAGAGACTAACTCTGAACCAACGGAAACTAAGGTCCAAGACA 2624
|||||||||||||| |||||||||||||||||||||||| || ||||||||||||||
Sbjct 2411 CATCATCAACAGAGGGAAAAGAGACTAACTCTGAACCAACAGACGGTAAGGTCCAAGACA 2470
Query 2625 TTTCCTAG 2632
||||||||
Sbjct 2471 TTTCCTAG 2478
> Ahg482947 jgi|Araly1|482947|fgenesh2_kg.4__2007__AT2G39280.1
Length=2512
Score = 1934 bits (1047), Expect = 0.0
Identities = 1836/2213 (83%), Gaps = 70/2213 (3%)
Strand=Plus/Plus
Query 270 TGAGCACAAGAGGGATGCATACGGATTTCCTGTCAGACCTCAACATGTGCAGAGATACAG 329
||| ||||| ||||||||||| |||||| |||| || ||||| |||||||| |||||| |
Sbjct 27 TGACCACAAAAGGGATGCATATGGATTTTCTGTGAGGCCTCAGCATGTGCAAAGATACCG 86
Query 330 AGAATATGCTGATATTTACAAGGAAGAAGAAGAAGAAAGGTCGGACAGGTGGAGCAGTTT 389
|||||||| |||||| |||||||| || ||||| || ||||| | |||||||| || |||
Sbjct 87 AGAATATGTTGATATCTACAAGGAGGAGGAAGAGGAGAGGTCAGCCAGGTGGAACAATTT 146
Query 390 CTTGGAAGATCATGTTGAATCGACTGAGTTACCTACAAACGGATCTTCTGAAAATATTCA 449
| |||||| ||||| |||| ||| | | | || |||| |||||||||| |||
Sbjct 147 CCTGGAAGTTCATGCAGAAT---CTG-G---CGT--GAATAGATCGTCTGAAAATAATCA 197
Query 450 CGCACCGT-TTAGTGAAAGTGAGAAGGAAAAAGAAAAAGAATTAAACAAGGG-GCCTG-- 505
| | | | | ||| ||||| ||| |||||||| | |||| ||||||||| | |||
Sbjct 198 TGTA-CATCCAATTGAGAGTGACAAGAAAAAAGAAGAGGAATCAAACAAGGGTG-CTGAA 255
Query 506 -GTGAAGATCT-GCATACTGACAAGTTAGGTTCTGATGTAACTCCTGATAATGCCAGTGA 563
| ||||||| | | ||||| ||| | |||||||| ||||||||| ||||| || ||
Sbjct 256 AGAAAAGATCTAG-AAACTGAAAAGCCAAGTTCTGATTTAACTCCTGGGAATGCGAGAGA 314
Query 564 AGAAGAAGGA-CACCCCGATGCAGAGAAGAATGTTCACAGAGTGCAATTATGGACTGAGA 622
||||| | | ||| | ||||| ||||||||| |||| | | || |||||| ||||||
Sbjct 315 GGAAGATGAAGTTCCCAG-TGCAGCGAAGAATGTGCACAAATTTCAGTTATGGGCTGAGA 373
Query 623 TCAGACCGTCT-TTACGATCAATTGAAGACTTGATGAGCATCCGTGTCAAGAA-GAAGGG 680
||||||| ||| || | | ||||||| ||||||||||| ||||||||| || ||||||
Sbjct 374 TCAGACCATCTCTT-CAAGCAATTGAGGACTTGATGAGTGCCCGTGTCAA-AATGAAGGG 431
Query 681 GGATT-TATCAAAAAGCGAGCAAGAGGCTCCGAAGGTGAAGATT--TCACCTTCATTTGA 737
||||| | |||| |||||||||| || | ||| || | ||| | ||| ||| |||
Sbjct 432 GGATTCCA-CAAATGGCGAGCAAGAAGCGCAGAAATTG-A-ATTCCTTACCCTCAACTGA 488
Query 738 TGATG-CCAAATCTTCCAAGGGAGCATCTGATATTGATTCTGAAGACGAGTTCTATGATG 796
||| | |||||||||| ||||| | ||||| | ||||||||||||||||||||||||||
Sbjct 489 TGA-GACCAAATCTTCAAAGGGTGTGTCTGAGAATGATTCTGAAGACGAGTTCTATGATG 547
Query 797 TTGAGAGGTCCGAT---GTTCAGGATGGTTCTTCTTCAGATGGTACAGGTGTCTCTGGTA 853
| ||||| || ||| |||||||||| ||||||||||||| || ||||||| | |
Sbjct 548 TGGAGAGATCAGATCCAATTCAGGATGG---TTCTTCAGATGGTGCAAGTGTCTCCAGCA 604
Query 854 TCCCTGTTGCTGCTGATGCAA-GTC-C-ACTGTCTACATGTCCTTGGAAGGAAGAACTTG 910
| ||| ||||||||| |||| || | | | ||| |||| || ||||| || |||||||
Sbjct 605 TGTCTGCTGCTGCTGACGCAACTTCTCTAGTATCTGCATGCCCCTGGAAAGACGAACTTG 664
Query 911 AAGTGC-TGATTCGCGGCGGTGTACCTATGGCTCTGAGGGGAGAGTTATGGCAAGCATTC 969
|||| | || ||| || || | |||||||||||||||||| ||| | |||||||||||
Sbjct 665 AAGTTCTTG-TTCATGGTGGGGCACCTATGGCTCTGAGGGGTGAGCTCTGGCAAGCATTT 723
Query 970 GTGGGCGTGAGGAAACGAC-GATGCAAGGATTATTATCAAAACCTTCTTGCAGCAGATGG 1028
| ||| || | |||||| | | | |||| ||||||| ||||| || || || || ||| |
Sbjct 724 GCGGGAGTCAAGAAACGTCGGGT-CAAGAATTATTACCAAAATCTGCTAGCTGCTGATAG 782
Query 1029 TTCT-GTAAAC-ACCATAGAGCAAGAGGATATGCAGCATGTTGATGATAAAGGTTCAAGT 1086
||| | |||| | ||||||||| ||| | |||||||||| ||||| ||||||||||||
Sbjct 783 -TCTAGGAAACGA-CATAGAGCAGGAGCACATGCAGCATGCAGATGAGAAAGGTTCAAGT 840
Query 1087 ACAGAATCTATTGCTGTTGTGGAAAAATGGAAAGGACAGATAGAAAAGGACTTACCTCGG 1146
||||| | | ||||| ||| |||||||||||||||||||||||||||| ||||| |||
Sbjct 841 ACAGACCCCCTCGCTGTCGTGCAAAAATGGAAAGGACAGATAGAAAAGGATTTACCCCGG 900
Query 1147 ACATTTCCTGGTCATCCTGCTCTAGATGATGATGGT-AGAAATGCTCTACGGCGTTTGCT 1205
|||||||| ||||||||||| |||||||||||| | ||| ||||||| ||||| |||||
Sbjct 901 ACATTTCCAGGTCATCCTGCCCTAGATGATGAT-TTCAGAGATGCTCTGCGGCGATTGCT 959
Query 1206 TACTGCTTATGCTAGGCATAATCCTTCTGTAGGATACTGTCAGGCTATGAATTTCTTTGC 1265
||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||
Sbjct 960 AACTGCATATGCTAGGCATAATCCCTCTGTTGGATACTGTCAGGCAATGAATTTCTTCGC 1019
Query 1266 TGCGCTTTTATTGCTTTTGATGCCAGAAGAAAATGCCTTTTGGGCACTGATAGGACTCAT 1325
||| |||||||| ||| ||||||| ||||| ||||| |||||| | || |||||| ||||
Sbjct 1020 TGCACTTTTATTACTTCTGATGCCCGAAGAGAATGCTTTTTGGTCGCTTATAGGAATCAT 1079
Query 1326 TGATGACTACTTCAATGGTTATTATTCAGAAGAAATGATAGAGTCTCAGGTTGATCAACT 1385
||||||||||||| ||| ||||||||||||||| ||||| ||||| |||||||| ||||
Sbjct 1080 TGATGACTACTTCCATGATTATTATTCAGAAGAGATGATCGAGTCCCAGGTTGACCAACA 1139
Query 1386 AGTTCTGGAGGAGTTAG-TTCGAGAAAGATTTCCTAAATTGGTTCATCATCTGGATTATC 1444
||||||||||||||| | ||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 1140 AGTTCTGGAGGAGTT-GCTTCGAGAGAGATTTCCAAAATTGGTTCATCATCTAGATTATC 1198
Query 1445 TTGGAGTGCAAGTGGCTTGGGTTACAGGGCCATGGTTTCTTTCCATCTTCATGAATATGC 1504
||||||| || |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1199 TTGGAGTCCAGGTGGCTTGTGTTACAGGGCCATGGTTTCTTTCCATCTTCATTAATATGC 1258
Query 1505 TTCCATGGGAAAGTGTTCTTAGAGTCTGGGATGTGCTTCTCTTTGAAGGAACTCGTGTTA 1564
||||||||||||||||||| ||||| |||||||||||||| |||||||||| ||||||||
Sbjct 1259 TTCCATGGGAAAGTGTTCTCAGAGTGTGGGATGTGCTTCTATTTGAAGGAAATCGTGTTA 1318
Query 1565 TGCTTTTCAGAACAGCACTCGCATTGATGGAACTATATGGTCCTGCATTAGTTACTACGA 1624
||||||||||||||||||| |||||||||||| | |||||||||||||| ||||| || |
Sbjct 1319 TGCTTTTCAGAACAGCACTTGCATTGATGGAATTTTATGGTCCTGCATTGGTTACAACCA 1378
Query 1625 AGGATGCTGGAGACGCTGTTACTTTGCTACAATCACTGACTGGATCAACATTTGATAGCA 1684
|||| |||| || ||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1379 AGGACACTGGCGATGCTGTTACTTTGCTACAATCAATGACTGGTTCAACATTTGATAGCA 1438
Query 1685 GCCAGCTAGTTTTAACTGCTTGCATGGGTTACCAAAATGTACATGAAATTAGATTGCAAG 1744
||||||| ||||| |||||||||||||||||||| | ||||||||||| ||||||||| |
Sbjct 1439 GCCAGCTCGTTTTCACTGCTTGCATGGGTTACCAGAGTGTACATGAAAGTAGATTGCAGG 1498
Query 1745 AATTGCGAAGCAAGCATAGGCCAGCTGTGATCGCTGCACTTGAGGAAAGGTCAAAGGGGC 1804
|||| ||||||| || |||||||| || || |||||| |||||||||| | ||||||||
Sbjct 1499 AATTAAGAAGCAAACACAGGCCAGCAGTAATAGCTGCATTTGAGGAAAGATTAAAGGGGC 1558
Query 1805 TTCAAGCGTGGAGAGATTCTAAGGGACTTGCCTCCAAATTATATAATTTTAAGCAAGACC 1864
||||||| ||||| ||||| || || | ||| |||||||| |||||| |||||||||||
Sbjct 1559 TTCAAGCTTGGAGGGATTCAAAAGGCCCTGCGACCAAATTACATAATTCTAAGCAAGACC 1618
Query 1865 CAAAATCTGTTTTGGTGGATAGCAAAGCCTCATTGTCAAATGGGAGTTTGTCTCGATCTG 1924
|||| |||||||| | |||||||||||||| |||||||||||||| ||||| ||||
Sbjct 1619 CAAATTCTGTTTTAGC---TAGCAAAGCCTCATCATCAAATGGGAGTTTATCTCGTTCTG 1675
Query 1925 AGTCAGGATCAAGTAATGCAGATGAAGTGTTGGTTAGCCTAACTGGGGATGGGGAGGTAG 1984
| || ||||| ||| ||||||| || || || ||||||| ||||||||||| ||| |||
Sbjct 1676 AATCGGGATCCAGTTATGCAGACGACGTCTTTATTAGCCTGACTGGGGATGGTGAGATAG 1735
Query 1985 ATTCTGTTCAAGATCTTCAAGCG-CAGGTTCTGTGGTTGAAGGCTGAACTCTGCAAGTTG 2043
||| | ||||||||| ||||| | |||||||| |||||||||| |||| || |||||||
Sbjct 1736 ATTGTTTTCAAGATCATCAAG-GACAGGTTCTCTGGTTGAAGGGTGAATTCCACAAGTTG 1794
Query 2044 CTTGAGGAGAAACGATCAGCTCTACTTAGAGCTGAAGAATTGGAGATTGCTCTCATGGAG 2103
|||||||||||| |||| ||| |||| ||||||||||| |||||||| ||||||||||||
Sbjct 1795 CTTGAGGAGAAAAGATCCGCTTTACTAAGAGCTGAAGAGTTGGAGATAGCTCTCATGGAG 1854
Query 2104 ATAGT-AAAGGAAGACAATCGGCGTCAATTGA-GTGCCAAGGTCGAACAGTTAGAGCAAG 2161
|| || ||| |||| ||||| |||||| ||| | || ||| | || ||||||||| |||
Sbjct 1855 ATGGTCAAAC-AAGATAATCGACGTCAACTGAAG-GCTAAGATTGAGCAGTTAGAGAAAG 1912
Query 2162 AAATGGCCGAAG-TTCAGA-GACTCCTCTCTGATAAGCAGG-AACAAGAAGGTGCAATGC 2218
| || | || | ||| || |||| | ||||||||| ||| ||||||||||||| |||
Sbjct 1913 AGGTGACAGA-GCTTC-GAAGACTTGTTTCTGATAAG-AGGGAACAAGAAGGTGCTATGA 1969
Query 2219 TACAGGTCTTGATGCGGGTGGAGCAAGAACAGAAGGTAACAGAAGATGCACGAATATTTG 2278
||||| ||||||||||| ||||||||||||| || ||||||||||||||||| | | |||
Sbjct 1970 TACAGATCTTGATGCGGATGGAGCAAGAACATAAAGTAACAGAAGATGCACGGAGACTTG 2029
Query 2279 CTGAGCAGGATGCAGAAGCGCAGAGATATGCTGCTCAAGT-CTTGCAGGAAAAATACGAG 2337
||||||||||||||| ||| ||||||||||||||| |||| ||| |||||||| || ||
Sbjct 2030 CTGAGCAGGATGCAGCAGCACAGAGATATGCTGCTGAAGTACTT-CAGGAAAAGTATGAA 2088
Query 2338 GAAGCTGTTGCTGCACTGGCTGAAATGGAGAAGAGAGCAGTGATGGCAGAGTCCATGCTC 2397
||||||||||| || || ||||| |||||| |||| ||||| ||||||||||||||| |
Sbjct 2089 GAAGCTGTTGCAGCGCTCGCTGAGATGGAGGAGAGGGCAGTAATGGCAGAGTCCATGTTG 2148
Query 2398 GAGGCAACTTTGCAGTATCAATCTGGCCAACTCAAAGCACAACCTTCACCACG 2450
||||| |||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 2149 GAGGCGACTTTGCAGTATCAATCTGGCCAAGTTAAAGCACAACCTTCACCACG 2201
> Ahg897524 jgi|Araly1|897524|Al_scaffold_0005_1490
Length=2259
Score = 1546 bits (837), Expect = 0.0
Identities = 1464/1763 (83%), Gaps = 57/1763 (3%)
Strand=Plus/Plus
Query 270 TGAGCACAAGAGGGATGCATACGGATTTCCTGTCAGACCTCAACATGTGCAGAGATACAG 329
||| ||||| ||||||||||| |||||| |||| || ||||| |||||||| |||||| |
Sbjct 27 TGACCACAAAAGGGATGCATATGGATTTTCTGTGAGGCCTCAGCATGTGCAAAGATACCG 86
Query 330 AGAATATGCTGATATTTACAAGGAAGAAGAAGAAGAAAGGTCGGACAGGTGGAGCAGTTT 389
|||||||| | |||| |||||||| |||||||| || ||||||| |||||||| || |||
Sbjct 87 AGAATATGTTAATATCTACAAGGAGGAAGAAGAGGAGAGGTCGGCCAGGTGGAACAATTT 146
Query 390 CTTGGAAGATCATGTTGAATCGACT-GAGTTACCTACAAACGGATCTTCTGAAAATATTC 448
| |||||||||||| |||| || | | | | | || ||||| |||||||||| ||
Sbjct 147 CCTGGAAGATCATGCAGAAT---CTGGCG-T--GT-CGAATGGATCGTCTGAAAATAATC 199
Query 449 ACGCACCGT-TTAGTGAAAGTGAGAAGGAAAA-AGAAAAAGAATTAAACAAGGG-GCCTG 505
| | | | ||||||||||| || ||||| |||| | |||| ||||||||| | |||
Sbjct 200 ATG-TCAATCCAAGTGAAAGTGACAA-GAAAATAGAAGAGGAATCAAACAAGGGTG-CTG 256
Query 506 ---GTGAAGATCTGCATACTGACAAGTTAGGTTCTGATGTAACTCCTGATAATGCCAGTG 562
| |||||||| ||||||| ||| |||||||||| ||| ||||| ||||| || |
Sbjct 257 AAAGAAAAGATCTGAATACTGAAAAGCCAGGTTCTGATTTAAATCCTGGGAATGCGAGAG 316
Query 563 AAGAAGAAGGA-CACCCCGATGCAGAGAAGAATGTTCACAGAGTGCAATTATGGACTGAG 621
| |||| | || ||| |||||||||| ||||| |||| ||| | || ||| |||||
Sbjct 317 AGGAAG-ATGAGGTTCCCAATGCAGAGAAAAATGTGCACAAAGTTCTGTTGTGGGCTGAG 375
Query 622 ATCAGACCGTCT-TTACGATCAATTGAAGACTTGATGAGCATCCGTGTCAAGAA-GAAGG 679
|||||||| ||| || | | ||||||| ||||||||||| |||||||||| || ||||
Sbjct 376 ATCAGACCATCTCTT-CAAGCAATTGAGGACTTGATGAGTGTCCGTGTCAA-AATAAAGG 433
Query 680 GGGATT-TATCAAAAAGCGAGCAAGAGGCTCCGAAGGTGAAGATT--TCACCTTCAT-TT 735
|||||| | |||| |||||||||| |||| ||| || | ||| | ||| || | |
Sbjct 434 GGGATTCCA-CAAATGGCGAGCAAGAAGCTCAGAAATTG-A-ATTCCTTACCCTC-TACT 489
Query 736 GATGATG-CCAAATCTTCCAAGGGAGCATCTGATATTGATTCTGAAGACGAGTTCTATGA 794
||||| | |||||||||| ||||||| ||||| | |||||||||||| |||||||||||
Sbjct 490 GATGA-GACCAAATCTTCAAAGGGAGTGTCTGAGAATGATTCTGAAGATGAGTTCTATGA 548
Query 795 TGTTGAGAGGTCCGAT---GTTCAGGATGGTTCTTCTTCAGATGGTACAGGTGTCTCTGG 851
||| || || || ||| |||||||||| |||||||||| ||||| ||||||| |
Sbjct 549 TGTGGAAAGATCAGATCCAATTCAGGATGG---TTCTTCAGATAGTACAAGTGTCTCCAG 605
Query 852 TATCCCTGTTGCTGCTGATGCAA-GT-CC-ACTGTCTACATGTCCTTGGAAGGAAGAACT 908
|| ||| |||||||||||||| | || | | ||| |||| || |||||||| |||||
Sbjct 606 CATGTCTGCTGCTGCTGATGCAACTTCCCTAATATCTGCATGCCCCTGGAAGGACGAACT 665
Query 909 TGAAGTGC-TGATTCGCGGCGGTGTACCTATGGCTCTGAGGGGAGAGTTATGGCAAGCAT 967
|||||| | || ||| ||||| | |||||||||||||||||| ||| | ||||||||||
Sbjct 666 TGAAGTTCTTG-TTCATGGCGGGGCACCTATGGCTCTGAGGGGTGAGCTCTGGCAAGCAT 724
Query 968 TCGTGGGCGTGAGGAAACGAC-GATGCAAGGATTATTATCAAAACCTTCTTGCAGCAGAT 1026
| | ||| || | |||||| | | | |||| ||||||| ||||| || || || || |||
Sbjct 725 TTGCGGGAGTCAAGAAACGTCGGGT-CAAGAATTATTACCAAAATCTGCTAGCTGCTGAT 783
Query 1027 GGTTCT-GTAAAC-ACCATAGAGCAAGAGGATATGCAGCATGTTGATGATAAAGGTTCAA 1084
| ||| | |||| | ||||||||| ||| | |||||||||| ||||| ||||||||||
Sbjct 784 AG-TCTAGGAAACGA-CATAGAGCAGGAGCACATGCAGCATGCAGATGAGAAAGGTTCAA 841
Query 1085 GTACAGAATCTATTGCTGTTGTGGAAAAATGGAAAGGACAGATAGAAAAGGACTTACCTC 1144
||||||| | || |||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 842 GTACAGACCCCATCGCTGTTGTAGAAAAATGGAAAGGACAGATAGAAAAGGATTTACCCC 901
Query 1145 GGACATTTCCTGGTCATCCTGCTCTAGATGATGATGGT-AGAAATGCTCTACGGCGTTTG 1203
|||||||||| ||||||||||| |||||||||||| | ||||||||||| ||||| |||
Sbjct 902 GGACATTTCCAGGTCATCCTGCCCTAGATGATGAT-TTCAGAAATGCTCTGCGGCGATTG 960
Query 1204 CTTACTGCTTATGCTAGGCATAATCCTTCTGTAGGATACTGTCAGGCTATGAATTTCTTT 1263
|| ||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 961 CTAACTGCCTATGCTAGGCATAATCCCTCTGTTGGATACTGTCAGGCAATGAATTTCTTC 1020
Query 1264 GCTGCGCTTTTATTGCTTTTGATGCCAGAAGAAAATGCCTTTTGGGCACTGATAGGACTC 1323
||||| |||||||| ||| ||||||| |||||||||||||||||| | || |||||| ||
Sbjct 1021 GCTGCACTTTTATTACTTCTGATGCCCGAAGAAAATGCCTTTTGGTCGCTTATAGGAATC 1080
Query 1324 ATTGATGACTACTTCAATGGTTATTATTCAGAAGAAATGATAGAGTCTCAGGTTGATCAA 1383
||||||||||||||| ||| ||||||||||||||| ||||| || || |||||||| |||
Sbjct 1081 ATTGATGACTACTTCCATGATTATTATTCAGAAGAGATGATCGAATCCCAGGTTGACCAA 1140
Query 1384 CTAGTTCTGGAGGAGTTAG-TTCGAGAAAGATTTCCTAAATTGGTTCATCATCTGGATTA 1442
| ||||||||||||||| | ||||||| ||||||||||||||||||||||||| ||||
Sbjct 1141 CGAGTTCTGGAGGAGTT-GCTTCGAGAGCGATTTCCTAAATTGGTTCATCATCTAGATTT 1199
Query 1443 TCTTGGAGTGCAAGTGGCTTGGGTTACAGGGCCATGGTTTCTTTCCATCTTCATGAATAT 1502
||||||||| || |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1200 TCTTGGAGTCCAGGTGGCTTGTGTTACAGGGCCATGGTTTCTTTCCATCTTCATTAATAT 1259
Query 1503 GCTTCCATGGGAAAGTGTTCTTAGAGTCTGGGATGTGCTTCTCTTTGAAGGAACTCGTGT 1562
||||||||||||||||||||| ||||| |||||||||||||| |||||||||| ||||||
Sbjct 1260 GCTTCCATGGGAAAGTGTTCTCAGAGTGTGGGATGTGCTTCTATTTGAAGGAAATCGTGT 1319
Query 1563 TATGCTTTTCAGAACAGCACTCGCATTGATGGAACTATATGGTCCTGCATTAGTTACTAC 1622
|||||||||||||||||||||||||||| ||||| | || ||||||||||| ||||| ||
Sbjct 1320 TATGCTTTTCAGAACAGCACTCGCATTGGTGGAATTTTACGGTCCTGCATTGGTTACAAC 1379
Query 1623 GAAGGATGCTGGAGACGCTGTTACTTTGCTACAATCACTGACTGGATCAACATTTGATAG 1682
||||| ||||||| |||||||||||| |||| ||| ||||||| ||||||||||||||
Sbjct 1380 CAAGGACACTGGAGATGCTGTTACTTTGTTACAGTCAATGACTGGTTCAACATTTGATAG 1439
Query 1683 CAGCCAGCTAGTTTTAACTGCTTGCATGGGTTACCAAAATGTACATGAAATTAGATTGCA 1742
||||||||| ||||| |||||||||||||| ||||||| ||||||||||| |||||||||
Sbjct 1440 CAGCCAGCTCGTTTTCACTGCTTGCATGGGGTACCAAAGTGTACATGAAAGTAGATTGCA 1499
Query 1743 AGAATTGCGAAGCAAGCATAGGCCAGCTGTGATCGCTGCACTTGAGGAAAGGTCAAAGGG 1802
||| | ||||||| || |||||||| || || |||||| |||||||||| | ||||||
Sbjct 1500 GGAACTAAGAAGCAAACACAGGCCAGCAGTAATAGCTGCATTTGAGGAAAGATTAAAGGG 1559
Query 1803 GCTTCAAGCGTGGAGAGATTCTAAGGGACTTGCCTCCAAATTATATAATTTTAAGCAAGA 1862
||||||||| ||||| ||||| || || | ||| |||||||| |||||| |||||||||
Sbjct 1560 GCTTCAAGCTTGGAGGGATTCAAAAGGCCCTGCGACCAAATTACATAATTCTAAGCAAGA 1619
Query 1863 CCCAAAATCTGTTTTGGTGGATAGCAAAGCCTCATTGTCAAATGGGAGTTTGTCTCGATC 1922
|||||| |||||||| | |||||||||||||| ||||||||||||||| ||||| ||
Sbjct 1620 CCCAAATTCTGTTTTAGC---TAGCAAAGCCTCATCGTCAAATGGGAGTTTATCTCGTTC 1676
Query 1923 TGAGTCAGGATCAAGTAATGCAGATGAAGTGTTGGTTAGCCTAACTGGGGATGGGGAGGT 1982
||| |||||||| ||| ||||||| || || || ||||||| ||||||||||| ||| |
Sbjct 1677 TGAATCAGGATCCAGTTATGCAGACGACGTCTTTATTAGCCTGACTGGGGATGGTGAGAT 1736
Query 1983 AGATTCTGTTCAAGATCTTCAAG 2005
||||| | |||||||||||||||
Sbjct 1737 AGATTGTTTTCAAGATCTTCAAG 1759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111033064175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5