BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55030.1
Length=1231
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938432 jgi|Araly1|938432|scaffold_502623.1 1225 0.0
Ahg901854 jgi|Araly1|901854|Al_scaffold_0004_2504 608 3e-173
Ahg485066 jgi|Araly1|485066|fgenesh2_kg.5__1058__AT2G39290.1 472 4e-132
> Ahg938432 jgi|Araly1|938432|scaffold_502623.1
Length=743
Score = 1225 bits (663), Expect = 0.0
Identities = 718/744 (97%), Gaps = 5/744 (1%)
Strand=Plus/Plus
Query 81 GATCAGCTCTTGTGGAGGATATGGGTGAAGAAGACACCGCGACGGTGGATCAGAACAGTT 140
|||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||
Sbjct 1 GATCAGCTCTTGTGGAGGTTTTGGGTGAAGAAGACACCGTGACGGTGGATCAGAACAGTT 60
Query 141 TCGGTGGTGGCAAAGATTCA-TTGCTTCGTAATCGTCATTCGTCGCCATTGCCTTCACCG 199
|||||||||||||||||| | ||||| ||||||||||| |||||||||||||||||||||
Sbjct 61 TCGGTGGTGGCAAAGATT-ATTTGCTCCGTAATCGTCACTCGTCGCCATTGCCTTCACCG 119
Query 200 ACACAGCTTTCTTCTAAAGTGATTACATTGCCTACCGTATTAACCCTTGGCCGTGTAGCT 259
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 120 ACACAGCTATCTTCTAAAGTGATTACATTGCCTACCGTATTAACCCTAGGCCGTGTAGCT 179
Query 260 GCCGTTCCGATTCTCGTCGCCACCTTTTACGTTGATTGCTGGTGGGGAAGAACTGCTACG 319
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 180 GCCGTTCCGATTCTCGTCGCGACCTTTTACGTTGATTGCTGGTGGGGAAAAACTGCTACA 239
Query 320 ACAAGTATTTTCATTGCAGCAGCCATTACAGATTGGCTTGATGGATATATTGCACGGAAG 379
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 ACAAGTATTTTTATTGCAGCAGCCATCACAGATTGGCTTGATGGATATATTGCACGGAAG 299
Query 380 ATGAGATTGGGTTCTGAATTTGGTGCATTTTTGGATCCAGTGGCAGATAAGCTTATGGTA 439
|||||||| ||||||| ||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 300 ATGAGATTAGGTTCTGCATTTGGTGCTTTTTTGGATCCAGTGGCGGATAAGCTTATGGTA 359
Query 440 GCAGCTACATTGATATTGTTGTGCACTAAACCAATGGTCGCCGTTGTCTTAGGACCAGTT 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCAGCTACATTGATATTGTTGTGCACTAAACCAATGGTCGCCGTTGTCTTAGGACCAGTT 419
Query 500 CCATGGTTAGTGACAGTACCTTCAATCGCCATCATTGGTAGAGAGATTACTATGTCTGCA 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CCATGGTTAGTGACAGTACCTTCAATCGCCATCATTGGTAGAGAGATTACTATGTCTGCA 479
Query 560 GTAAGAGAATGGGCTGCATCTCAAAACGGCAAGCTTTCAGAGGCTGTTGCTGTAAATAGC 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTAAGAGAATGGGCTGCATCTCAAAACGGCAAGCTTTCAGAGGCTGTTGCTGTAAATAGC 539
Query 620 TTGGGAAAGTGGAAAACTGCAACGCAGATGATAGCGCTAACCATACTTCTTGCAAGCCGG 679
||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||
Sbjct 540 TTGGGAAAGTGGAAAACCGCAACGCAGATGATAGCGTTAACCTTACTTCTTGCAAGCCGG 599
Query 680 GATAGCAGTTTTGAGAGACTATTACCGTCGGGTATTGGGTTGCTCTATGTATCTGCAGGG 739
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 600 GATAGCAGTTTTGAGAGACTATTACCGTCGGGTATTTGGTTGCTCTATGTATCCGCAGGG 659
Query 740 CTCTCTATATGGTCTTTAGTTGTTTATATGAGGAAGATATGGAGAGTACTGCTAAAGAAG 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CTCTCTATATGGTCTTTAGTTGTTTATATGAGGAAGATATGGAGAGTACTGCTAAAGAAG 719
Query 800 TAGCAACAAAAAA---CTCTTTTT 820
||||||||||||| ||||||||
Sbjct 720 TAGCAACAAAAAAAAACTCTTTTT 743
> Ahg901854 jgi|Araly1|901854|Al_scaffold_0004_2504
Length=891
Score = 608 bits (329), Expect = 3e-173
Identities = 498/582 (86%), Gaps = 2/582 (0%)
Strand=Plus/Plus
Query 209 TCTTCTAAAGTGATTACATTGCCTACCGTATTAACCCTTGGCCGTGTAGCTGCCGTTCCG 268
||||| ||||| ||||||| || ||||||||||| ||||| ||||| || ||||| |||
Sbjct 301 TCTTCCAAAGTTCTTACATTACCCACCGTATTAACACTTGGTCGTGTCGCCGCCGTCCCG 360
Query 269 ATTCTCGTCGCCACCTTTTACGTTGATTGCTGGTGGGGAAGAACTGCTACGACAAGTATT 328
|||||||||| ||||||||||||||| | |||||||||| ||||||||| ||||| |||
Sbjct 361 CTTCTCGTCGCAACCTTTTACGTTGATAGTTGGTGGGGAACAACTGCTACAACAAGCATT 420
Query 329 TTCATTGCAGCAGCCATTACAGATTGGCTTGATGGATATATTGCACGGAAGATGAGATTG 388
||||||||||||||||||||||| |||||||| || ||| |||| || |||||||| ||
Sbjct 421 TTCATTGCAGCAGCCATTACAGACTGGCTTGACGGCTATCTTGCCCGCAAGATGAGGTTA 480
Query 389 GGTTCTGAATTTGGTGCATTTTTGGATCCAGTGGCAGATAAGCTTATGGTAGCAGCTACA 448
||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 481 GGTTCTGCGTTTGGTGCCTTTTTGGATCCAGTTGCAGATAAGCTTATGGTCGCAGCTACA 540
Query 449 TTGATATTGTTGTGCACTAAACCAATGGTCGCCGTTGTCTTAGGACCAGTTCCATGGTTA 508
||||| || |||| || ||||| || | | | || |||||||||||||||||||||
Sbjct 541 TTGATCTTACTGTGTACAAAACCTATCGAAGTTGCTGAATTAGGACCAGTTCCATGGTTA 600
Query 509 GTGACAGTACCTTCAATCGCCATCATTGGTAGAGAGATTACTATGTCTGCAGTAAGAGAA 568
|||| |||||||| || || |||||||||||||||||||||||||| ||||||||||||
Sbjct 601 TTGACCGTACCTTCTATTGCAATCATTGGTAGAGAGATTACTATGTCAGCAGTAAGAGAA 660
Query 569 TGGGCTGCATCTCAAAACGGCAAGCTTTCAGAGGCTGTTGCTGTAAATAGCTTGGGAAAG 628
||||||||||||||||| || ||||||| |||||| ||||||||||||| |||||| |||
Sbjct 661 TGGGCTGCATCTCAAAATGGAAAGCTTTTAGAGGCAGTTGCTGTAAATAACTTGGGCAAG 720
Query 629 TGGAAAACTGCAACGCAGATGATAGCGCTAACCATACTTCTTGCAAGCCGGGATAGCAGT 688
|||||||| || |||||||||| ||| ||||||||||||||||||||||| ||||||| |
Sbjct 721 TGGAAAACCGCCACGCAGATGACAGCACTAACCATACTTCTTGCAAGCCGAGATAGCAAT 780
Query 689 TTTGAGA-GACTATTACCGTCGGGTATTGGGTTGCTCTATGTATCTGCAGGGCTCTCTAT 747
||| || | || || | || ||| ||| ||||| |||||||| ||||| || || |
Sbjct 781 GTTG-GATGGCTCGTAGCTTCAGGTGCTGGCTTGCTTTATGTATCAGCAGGACTATCGGT 839
Query 748 ATGGTCTTTAGTTGTTTATATGAGGAAGATATGGAGAGTACT 789
|||||||||| |||||||||||||||||||||| ||||||
Sbjct 840 TTGGTCTTTAGCCGTTTATATGAGGAAGATATGGAAAGTACT 881
> Ahg485066 jgi|Araly1|485066|fgenesh2_kg.5__1058__AT2G39290.1
Length=1221
Score = 472 bits (255), Expect = 4e-132
Identities = 499/612 (82%), Gaps = 35/612 (6%)
Strand=Plus/Plus
Query 209 TCTTCTAAAGTGATTACATTGCCTACCGTATTAACCCTTGGCCGTGTAGCTGCCGTTCCG 268
||||| ||||| ||||||| || ||||||||||| |||||||||||||| |||| |||
Sbjct 321 TCTTCCAAAGTTCTTACATTACCCACCGTATTAACACTTGGCCGTGTAGCAGCCG-TCCC 379
Query 269 A-TTCTCGTCGCCACCTTTTACGTTGATTGCTGGTGGGGAAGAACTGCTACGACAAGTAT 327
| |||||||||| |||||||| |||||| | |||||||||| ||||||||| ||||| ||
Sbjct 380 ACTTCTCGTCGCAACCTTTTATGTTGATAGTTGGTGGGGAACAACTGCTACAACAAGCAT 439
Query 328 TTTCATTGCAGCAGCCATTACAGATTGGCTTGATGGATATATTGCACGGAAGATGAGATT 387
|||||||||||||||||||||||| |||||||| || ||| |||| || |||||||| ||
Sbjct 440 TTTCATTGCAGCAGCCATTACAGACTGGCTTGACGGCTATCTTGCCCGCAAGATGAGGTT 499
Query 388 GGGTTCTGAATTTGGTGCATTTTTGGATCCAG-TG--G--CA-G-A-TAAG---C----- 431
||||||| |||||||| ||||||||||||| || | | | | |||| |
Sbjct 500 AGGTTCTGCGTTTGGTGCCTTTTTGGATCCAGTTGCAGATAAGGTACTAAGCTTCATTTA 559
Query 432 -T-TA-TGG-----TAG--C-AGCTACATTGATATTGTTGTGCACTAAACCAATGGTCGC 480
| || ||| || | | |||||||||| || |||| || ||||| || | |
Sbjct 560 TTATAGTGGAAAAAGAGATCTATCTACATTGATCTTACTGTGTACAAAACCTATCGACAT 619
Query 481 CGTTGTCTTAGGACCAGTTCCATGGTTAGTGACAGTACCTTCAATCGCCATCATTGGTAG 540
| || ||||||||||||||||||||| |||| |||||||| || || |||||||||||
Sbjct 620 TGCTGAATTAGGACCAGTTCCATGGTTATTGACCGTACCTTCTATTGCAATCATTGGTAG 679
Query 541 AGAGATTACTATGTCTGCAGTAAGAGAATGGGCTGCATCTCAAAACGGCAAGCT-TTCAG 599
|||||||||||||| ||||||||||||||||||||||||||||| || ||||| || ||
Sbjct 680 GGAGATTACTATGTCAGCAGTAAGAGAATGGGCTGCATCTCAAAATGGGAAGCTGTT-AG 738
Query 600 AGGCTGTTGCTGTAAATAGCTTGGGAAAGTGGAAAACTGCAACGCAGATGATAGCGCTAA 659
|||| ||||||||||||| |||||| ||||||||||| || |||||||||| ||| ||||
Sbjct 739 AGGCAGTTGCTGTAAATAACTTGGGCAAGTGGAAAACCGCCACGCAGATGACAGCACTAA 798
Query 660 CCATACTTCTTGCAAGCCGGGATAGCAGTTTTGAGA-GACTATTACCGTCGGGTATTGGG 718
||||||||||||||||||||||||||| | ||| || | || || | || ||| |||
Sbjct 799 CCATACTTCTTGCAAGCCGGGATAGCAATGTTG-GATGGCTCGTAGCTTCAGGTGCTGGC 857
Query 719 TTGCTCTATGTATCTGCAGGGCTCTCTA-TATGGTCTTTAGTTGTTTATATGAGGAAGAT 777
||||| |||||||| ||||| || || | | |||||||||| |||||||||||||||||
Sbjct 858 TTGCTTTATGTATCAGCAGGACTATC-AGTTTGGTCTTTAGCCGTTTATATGAGGAAGAT 916
Query 778 ATGGAGAGTACT 789
||||| ||||||
Sbjct 917 ATGGAAAGTACT 928
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45976237902
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5