BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55040.1
Length=1100
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938433 jgi|Araly1|938433|scaffold_502624.1 1386 0.0
> Ahg938433 jgi|Araly1|938433|scaffold_502624.1
Length=927
Score = 1386 bits (750), Expect = 0.0
Identities = 874/932 (94%), Gaps = 16/932 (2%)
Strand=Plus/Plus
Query 22 GAAAGTGAAAGCTGTGAGGTATGAGTGTGGGACTGAAAGTTAGCGCGTTCTTACATCCAA 81
|||||||||||||||||||||||||||||||||||||| |||||| || |||| |||||
Sbjct 1 GAAAGTGAAAGCTGTGAGGTATGAGTGTGGGACTGAAAATTAGCGTGTGCTTATATCCAT 60
Query 82 CGCTTGCGTTATCCTCGAGAGATGtctct-ctctcttcctcatcatcttctctctatctT 140
|||||||||||||| | |||||| ||||| ||| ||||||||||| ||||||||||||
Sbjct 61 CGCTTGCGTTATCCGCTAGAGATTTCTCTCCTC-CTTCCTCATCA---TCTCTCTATCTT 116
Query 141 GATCGGAAAATTCTCCGACCAGGCTCCGGGAGACGGTGGTGTAAATCC---------CGA 191
|||||||||||||||||||||||||||||||| || ||||| |||||| ||
Sbjct 117 GATCGGAAAATTCTCCGACCAGGCTCCGGGAGGCGATGGTGCAAATCCAGTGGGAAACGT 176
Query 192 AGAACCGAACCAATATTGGCTGTTGTAGAGTCAAGTCGAGTACCGGAGCTTGATTCTTCT 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 AGAACCGAACCAATATTGGCTGTTGTAGAGTCAAGTCGAGTACCGGAGCTTGATTCTTCT 236
Query 252 TCAGAACCAGTTCAAGTATTCGATGGATCAACAAGGTTGTACATATCTTACACTTGCCCA 311
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TCAGAACCAGTTCAAGTGTTCGATGGATCAACAAGGTTGTACATATCTTACACTTGCCCA 296
Query 312 TTTGCTCAGCGTGCGTGGATTGCTCGCAACTACAAGGGTCTGCAAAACAAGATAGAACTT 371
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTTGCTCAGCGTGCGTGGATTGCTCGCAACTACAAGGGTCTGCAAAACAAGATAGAACTC 356
Query 372 GTACCGATCGATCTTAAAAACAGGCCTGCTTGGTATAAGGAGAAAGTTTACTCGGCTAAC 431
|||||||| |||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 357 GTACCGATTGATCTTAAAAACAGGCCTGCTTGGTATAAGGAGAAAGTTTACGCAGCCAAC 416
Query 432 AAGGTGCCTGCATTAGAGCACAATAACCGAGTATTGGGAGAGAGCCTTGATCTGATTAAG 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AAGGTGCCTGCATTAGAGCACAATAACCGAGTATTGGGAGAGAGCCTTGATCTGATTAAG 476
Query 492 TACATTGACACTAATTTTGAAGGGCCTTCGCTTACACCCGATGGTTTAGAGAAGCAAGTT 551
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 477 TACATTGACACTAATTTTGAAGGGCCTTCACTTACACCTGATGGTTTAGAGAAGCAAGCA 536
Query 552 GTAGCTGATGAGTTACTCTCTTACACTGACTCCTTCTCCAAGGCTGTAAGATCCACATTA 611
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 537 GTAGCTGATGAGTTACTCTCCTACACTGACTCCTTCTCCAAGGCTGTGAGATCCACATTA 596
Query 612 AACGGCACTGACACTAATGCAGCAGATGTTGCATTTGATTACATCGAGCAGGCTCTT-TC 670
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 597 AACGGCACTGACAGTAATGCAGCAGATGCTGCATTTGATTACATCGAGCAGGCTCTGATC 656
Query 671 CAAATTCAATGAAGGGCCTTTCTTTCTTGGTCAATTTAGTTTGGTTGATGTTGCATATGC 730
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 657 -AAATTCAATGAAGGGCCTTTCTTCCTTGGCCAATTTAGTTTGGTTGATGTTGCATATGC 715
Query 731 TCCTTTCATAGAGAGATTTCGGCTTATCTTAAGTGATGTGATGAACGTCGATATTACATC 790
||| |||||||||||||||| ||||||||||||||| ||||| || || ||||| | |||
Sbjct 716 TCCATTCATAGAGAGATTTCAGCTTATCTTAAGTGACGTGATAAATGTGGATATCAAATC 775
Query 791 TGGTCGGCCTAACCTTGCCCTTTGGATTCAGGAGATGAACAAAATCGAAGCTTACACCGA 850
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 776 TGGTCGGCCTAACCTTGCCCTTTGGATTCAGGAGATGAACAAGATCGAAGCTTACACCGA 835
Query 851 AACCCGTCAAGATCCACAAGAGCTTGTTGAAAGATACAAGAGACGAGTCCAAGCAGAAGC 910
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 836 AACCCGTCAAGATCCACAAGAGCTAGTTGAAAGATACAAGAGACGAGTCCAAGCAGAAGC 895
Query 911 ACGTCTCTAACCAGATGGTTCTCCGGATATCT 942
||||||||||||||||||| ||||||| |||
Sbjct 896 GCGTCTCTAACCAGATGGTTATCCGGATTTCT 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40982135775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5