BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55050.1
Length=1650
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938434 jgi|Araly1|938434|scaffold_502625.1 1975 0.0
> Ahg938434 jgi|Araly1|938434|scaffold_502625.1
Length=1197
Score = 1975 bits (1069), Expect = 0.0
Identities = 1158/1201 (96%), Gaps = 5/1201 (0%)
Strand=Plus/Plus
Query 294 TTTGGTTGAGACATGTGAATTATGGTATCTACAACATTTAGGAGAATTGTATCGCCTTGT 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTGGTTGAGACATGTGAATTATGGTATCTACAACATTTAGGAGAATTGTATCGCCTTGT 60
Query 354 TGGAGACCTTTTGGTATTGGAGAAGATTCTAGTCCTGGTAGTGATGATACGAATGGCCGT 413
||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||
Sbjct 61 TGGAGACCTTTTGGTATTGGAGAAGATTCGAGTCCTGGTAGTGATGATGCTAATGGCCGT 120
Query 414 CTCGATGGTCTCTTGTGGTACAAAGATTCTGGGAACCACATCACTGGAGAGTTTTCTATG 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCGATGGTCTCTTGTGGTACAAAGATTCTGGGAACCACATCACTGGAGAGTTTTCTATG 180
Query 474 GCAGTCGTTCAAGCTAACAACCTTCTTGAAGATCATAGCCAGTTAGAATCTGGTCCTATT 533
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GCAGTGGTTCAAGCTAACAACCTTCTTGAAGATCATAGCCAGTTAGAATCTGGTCCCATT 240
Query 534 AGTTTGCATGAGTCTGGACCTGAGGCAACTTTTGTTGGTGTTTATGATGGTCATGGAGGT 593
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGTTTGCATGATTCTGGACCTGAGGCAACTTTTGTTGGTGTTTATGATGGTCATGGAGGT 300
Query 594 CCCGAGGCTGCTCGGTTTGTAAACGATAGGCTCTTTTATAACATCAAGAGGTACACATCA 653
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 301 CCCGAGGCAGCTCGGTTTGTAAACGATAGACTCTTTTATAACATCAAGAGGTATACATCA 360
Query 654 GAACAGCGAGGGATGTCGCCTGATGTTATCACCAGAGGGTTTGTAGCAACAGAGGAGGAG 713
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAACAGCGAGGGATCTCACCCGATGTTATCACCAGAGGGTTTGTAGCAACAGAGGAGGAG 420
Query 714 TTTCTCGGTTTAGTGCAGGAGCAATGGAAGACCAAGCCACAGATTGCTTCTGTGGGAGCt 773
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 421 TTTCTCGGTTTAGTGCAGGAGCAATGGAAGAACAAGCCGCAGATTGCTTCTGTGGGAGCT 480
Query 774 tgttgtttggttggtattgtttgtaatggattgttgtatgttgCAAACGCAGGAGATTCT 833
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGTTGTTTGGTGGGTATTGTTTGTAATGGATTGTTGTATGTTGCAAACGCAGGAGATTCC 540
Query 834 CGGGTTGTGTTAGGGAAAGTCGCAAATCCGTTTAAAGAGTTGAAAGCTGTTCAGTTATCA 893
||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||
Sbjct 541 CGGGTTGTGTTAGGGAAAGTCGCGAATCCGTTTAAAGAGTTGAAGGCTGTTCAGCTATCG 600
Query 894 ACAGAGCATAATGCAAGTATCGAATCTGTGAGAGAGGAGTTACGTTTGTTGCATCCTGAT 953
||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 601 TCAGAGCATAATGCTAGTATTGAATCTGTGAGAGAGGAGTTACGTTTGTTGCACCCTGAT 660
Query 954 GATCCGAATATCGTGGTCTTGAAACACAAAGTTTGGCGTGTTAAAGGGATTATACAGGTC 1013
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 661 GATCCGAATATCGTGGTCTTGAAACACAAAGTTTGGCGTGTTAAAGGAATTATACAGGTT 720
Query 1014 TCAAGATCCATTGGTGACGCATACCTTAAAAGAGCGGAGTTTAATCAAGAACCGCTACTA 1073
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 721 TCGAGATCCATTGGTGACGCATACCTTAAAAGAGCGGAGTTTAATCAAGAACCGCTATTG 780
Query 1074 CCTAAGTTTAGGGTTCCAGAACGTTTTGAAAAGCCGATCATGAGAGCGGAACCGACTATA 1133
||||||||||| ||||||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct 781 CCTAAGTTTAGAGTTCCAGAACGTTTTGAGAGGCCGATCATGAGAGCCGAACCGACTATA 840
Query 1134 ACAGTTCATAAGATTCATCCGGAAGATCAGTTTCTTATATTTGCCTCGGATGGTTTATGG 1193
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ACAGTTCATAAGATTCACCCGGAAGATCAGTTTCTTATATTTGCCTCGGATGGTTTATGG 900
Query 1194 GAGCATCTAAGCAACCAGGAAGCTGTTGATATTGTCAATTCTTGTCCACGCAATGGTGTG 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GAGCATCTAAGCAACCAGGAAGCTGTTGATATTGTCAATTCTTGTCCACGCAATGGTGTG 960
Query 1254 GCTCGGAAGTTAGTGAAAGCTGCATTACAAGAAGCAGCAAAGAAGAGAGAGATGAGGTAT 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GCTCGGAAGTTAGTGAAAGCTGCATTACAAGAAGCAGCAAAGAAGAGAGAGATGAGGTAT 1020
Query 1314 TCTGATTTGGAGAAGATAGAACGTGGCATTCGGCGACACTTTCACGACGATATTACCGTT 1373
|| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1021 TCGGATTTGGAGAAGATAGAACGTGGCATCCGGCGACACTTTCACGACGATATAACCGTT 1080
Query 1374 ATTGTTGTCTTCCTCCACGCTACAAACTTCGCTACTCGAACTCCGATCTCTGTCAAAGGA 1433
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1081 ATTGTTGTCTTCCTCCACGCTACAAACTTCGCCACTCGAACTCCGATCTCTGTCAAAGGA 1140
Query 1434 GGTGGTCTCCTCTCAGCCCATAAT-CCCGTTTTATAGATCAttttttttCTCCTTATTTG 1492
|||||||||||||||||||||||| ||| ||||||||||||||||||| | | |||||||
Sbjct 1141 GGTGGTCTCCTCTCAGCCCATAATGCCC-TTTTATAGATCATTTTTTT-C-C-TTATTTG 1196
Query 1493 A 1493
|
Sbjct 1197 A 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61858557880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5