BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55060.1
Length=3060
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485925 jgi|Araly1|485925|fgenesh2_kg.5__1917__AT3G55060.1 4734 0.0
Ahg482949 jgi|Araly1|482949|fgenesh2_kg.4__2009__AT2G39300.1 680 0.0
> Ahg485925 jgi|Araly1|485925|fgenesh2_kg.5__1917__AT3G55060.1
Length=3052
Score = 4734 bits (2563), Expect = 0.0
Identities = 2909/3073 (95%), Gaps = 36/3073 (1%)
Strand=Plus/Plus
Query 3 GACACTCTCACACTTCTTGCACTTCTCCCTTTAGATCAAATCCACGTTATCTAGCGCTGT 62
||||||||||||||||||| || ||||| ||||||||||||| |||||||||| ||||||
Sbjct 1 GACACTCTCACACTTCTTGTAC-TCTCCGTTTAGATCAAATCGACGTTATCTAACGCTGT 59
Query 63 TATTAAATCTGCGTTTCAGTTTCT-T-CTCCAT-TCGAATTTTCGATTTGCAAAATCGCT 119
|| ||||||||||||||| ||||| | || || ||| ||| |||||||||||||||||
Sbjct 60 TAATAAATCTGCGTTTCA-TTTCTCTGTTCTATCTCG--TTTCCGATTTGCAAAATCGCT 116
Query 120 GTTTTATGCTGCAGTTGTTATAGCA-C--CTTTTGATTGGAGAAAACAATGAAAAAGCTC 176
|||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||
Sbjct 117 GTTTTATGCTGCAGTTGTGGTAGCATCTTCTTTTGATTGGAGAAAACAATGAAAAAGCTC 176
Query 177 TTCTTTTTCAGATCTTCTGGTAATGGAAATGATAAACAAGTTAACTGCGAAAAAGAAGCG 236
|||||||| ||||||||||||||||||| ||||||||| ||| |||||||||||| ||||
Sbjct 177 TTCTTTTTTAGATCTTCTGGTAATGGAACTGATAAACAGGTTCACTGCGAAAAAGCAGCG 236
Query 237 GATAGTAAGATGAGAACCCAAGCTAGTAGTCAGGCTGAACAAGAGTTCGATAGTCCTAAG 296
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GATAGTAAGATGAAAACCCAAGCTAGTAGTCAGGCTGAACAAGAGTTCGATAGTCCTAAG 296
Query 297 TCACATGGTCAAGTTTCTGGTGGTCTAGCTCTTAGACGAAGCCTTTCATGGTCCTCTGCA 356
||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 297 TCACAGGGTCACGTTTCTGGTGGTCCAGCTCTTAGACGAAGCCTTTCATGGTCCTCGGCA 356
Query 357 GGTTTCCTTTTTGACAAGTTTGGAGAAACTTCCAAGAATGAACTAACAACTAGTGCTACT 416
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 357 GGTTTCCTTTTTGATAAGTTTGGAGAAACTTCCAAGAATGAACT---AACTAGTGCTACT 413
Query 417 AAAAGCAAGGATAGGCGGCGCAATCATTCATCTCGATGCTTTACTCCAGAAAGACAAGTT 476
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 414 AAAAGCCAGGATAGGCGGCGCAATCATTCATCTCGATGCTTCACTCCAGAAAGACAAGTT 473
Query 477 AGAGAAAGGCAGTGTAAAGCAGACAAGTTTCAGCATGATTCGTCTGGGAGTTCATCATCT 536
||||||||||||||| |||||||||||||||| |||||||| || |||||||||||||||
Sbjct 474 AGAGAAAGGCAGTGTGAAGCAGACAAGTTTCAACATGATTCATCCGGGAGTTCATCATCT 533
Query 537 TGTTCGAGTAATGTCTCTAGTAAAGTTCTGGACCGTTATATTGATGGAGAAGAGCATTTG 596
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TGTTCTAGTAATGTCTCTAGTAAAGTTCTGGACCGTTATATTGATGGAGAAGAGCATTTG 593
Query 597 GAACCGTGCAAGCAAAAGAGTAATTCTTCACACAGTGGTGTTTCTGAGAGTATAAATCGA 656
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 594 GAACCGTGCAAGCAAAAGAGTAATTCTTCACACAGTGGTGTTTCTGGGAGTATAAACCGA 653
Query 657 AGGAGGCTTCCACCCCGAGTTCAATGGACAGTCCCTACATCACCATCAGACACTTTCGAT 716
||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| | | ||
Sbjct 654 AGGAGGCTTCCACCCCGGGTTCAGTGGACAGTCCCGACATCACCATCAGACACCTCCAAT 713
Query 717 GAGAAACGAAAGTCCCAGTCATTTAGAGAAGCTAAAGGCACCCATTTACGTTACTCTTCT 776
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 714 GAGAAACGAAAGTCCCAGTCATTTAGAGAAGCTAAAGGCACCCGTTTACGTTTCTCTTCT 773
Query 777 GCTGATTGTGTGGATAATGGGTTGCGGCATGGATCGCCTCGTTCGGTTGCTAGAAATGTC 836
|||||||||||||| ||||||||| |||||||||||||||||||| |||| |||||||||
Sbjct 774 GCTGATTGTGTGGAAAATGGGTTGAGGCATGGATCGCCTCGTTCGCTTGCAAGAAATGTC 833
Query 837 ATTGAAAGACTCTCTCAGACTCATGGCAAGTCAAAGGGTTCAAACCACGAACCAATCACA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 834 ATTGAAAGACTCTCTCAGACTCATGGCAAGTCAAAGGGTTCAAACCACGAACCCATCACA 893
Query 897 ATTCAAGATGTCTATGGTGGATCCCTTAACAGAACTTTTGACTCGAGCTCAGATA-TCGC 955
||||||||||||||||||||||||||||| ||||||||||||||||||||||| | || |
Sbjct 894 ATTCAAGATGTCTATGGTGGATCCCTTAATAGAACTTTTGACTCGAGCTCAGACATTC-C 952
Query 956 CGCTAATGTTTCACTAGCTGAACATTATGAACCTGTTAACGAGTATTATACGCAGGACTA 1015
|||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct 953 CGCTAATGTTTCACTAGCTGAACACTATGAACCTGTGAACGAGTATTATGCGCAGGACTA 1012
Query 1016 TGGAGGGCACCAGCAAAATTGTATACG-GAGTAGGAACGTGTACAAGTGTATGGAAGACG 1074
||||||| ||||||||||||||||||| | ||| ||||||||| ||||||||||||||||
Sbjct 1013 TGGAGGGAACCAGCAAAATTGTATACGTG-GTAAGAACGTGTATAAGTGTATGGAAGACG 1071
Query 1075 ATCTTGACTCCGAGCTAGAAATGAAAATTAAAGAAGCTGAGAAGAGAGCTAAATTGTTTT 1134
|| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1072 ATATTGACTCCGAGCTAGAAATGAAAATTAAAGACGCTGAGAAGAGAGCAAAATTGTTTT 1131
Query 1135 CTGCAGAATTGGAGCAGCAGAGATGCCTTTCAGACTGTGACTTCGATGTTTCATCTTTGG 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 CTGCAGAATTGGAGCAGCAGAGATGCCTTTCAGACTGTGACTTCGATGTTTCATCTTTGG 1191
Query 1195 TTGGGGCAATTAGAAAACTGGAAGATGAGAGGCTCCACTTGGCATTTGAGAATGTAAATC 1254
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 TCGGGGCAATTAGAAAACTGGAAGATGAGAGGCTCCACTTGGCATTTGAGAATGTAAATC 1251
Query 1255 TCTTACGGTCCCAAATAGTTGAGAGGGCTTCTGCTAGGGAAGAAATCAGATGGTTGAAGT 1314
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1252 TCTTACGGTCCCAAATGGTTGAGAGGGCTTCTGCCAGGGAAGAAATCAGATGGTTGAAGT 1311
Query 1315 CAGATTGGGACTTGCATATACAGAGACTAGAAAAGGAGAAGAGCGAGCTGCAGGCTGGAT 1374
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1312 CAGATTGGGACTTGCATATACAGAGACTAGAAAAGGAGAAGAGCGAGTTGCAGGCTGGAT 1371
Query 1375 TGGAGAAAGAGCTTGATAGAAGATCAGGTGAGTGGACGTCAAAACTCGAAAAATTCCAGC 1434
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1372 TGGAGAAAGAGCTTGATAGAAGATCAGGTGAGTGGACGTCGAAGCTCGAAAAATTCCAGC 1431
Query 1435 TTGAAGAGAAGAAGCTCCGAGAGCGTGTAAGAGAGCTTGCTGAGCATAATGTCTCACTCC 1494
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1432 TTGAAGAGAAGAAACTCCGAGAGCGTGTCAGAGAGCTTGCTGAGCATAATGTCTCACTCC 1491
Query 1495 AGAGAGAACTATCTGCTTTCCACGAAAATGAGACAGAGAACAAAGACATGATAACACATT 1554
|||| |||||||| ||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 1492 AGAGGGAACTATCGGCTTTTCATGAGAATGAGACAGAGAACAAAGACATGATAACACATT 1551
Query 1555 TGGAGAGAAGAGTTGCTGAGCTGACCACAACAGCAGATAAATTGCATGAAGAGAACAATT 1614
||||| |||||||||||||||||||| | ||||||||| |||||||||||||||||| ||
Sbjct 1552 TGGAGGGAAGAGTTGCTGAGCTGACCGCGACAGCAGATGAATTGCATGAAGAGAACACTT 1611
Query 1615 ATGTTAAACAAACTCTCTCCAAGTTACAAGAGAGTTACGCAGGTGCTACAGAAGATCTTG 1674
|||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||
Sbjct 1612 ATGTTAAACAAACTCTCTCCCAGTTACAAGAGAGTTATGAAGGTGCTACAGAAGATCTTG 1671
Query 1675 ATTTCTTGAGAAGAAACTTTGAAGAGAAGGATCAAGAATGCAGGGAGTTGCACAAATCTG 1734
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 ATTTCCTAAGAAGAAACTTTGAAGAGAAGGATCAAGAATGCAGGGAGTTGCACAAATCTG 1731
Query 1735 TTACAAAGTTTTTCAGAACTTGCAAAGAACAAGGGAAGACAATTGAGGGACTTCGAGATG 1794
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1732 TTACAAAGTTTCTCAGAACTTGCAAAGAACAAGGGAAGACAATCGAGGGACTTCGAGATG 1791
Query 1795 GTGTTTCTGAGGAGGTTAAGAAGCAACCGTCAGAGAAATTAGACCAGTTGGTCAAGAAAT 1854
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 GTGTTTCCGAGGAGGGTAAGAAGCAACCGTCAGAGAAATTAGACCAGTTGGTCAAGAAAT 1851
Query 1855 TGCAGGTCGAGCAGGTAAGGTTGACAGGGATCGAGCTTTCACTTAGAAGGGAAGTAGAAT 1914
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 TGCAGGTCGAGCAGATAAGGTTGACAGGGATCGAGCTTTCACTTAGAAGGGAAGTAGAAT 1911
Query 1915 CAATGAAGCTTGAAACTGACTCTCTTCGCCATGAAAATATCTGTCTACTGAATCGATTGA 1974
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1912 CAATGAAGCTTGAAACTGACTCTCTTCGCCATGAGAATATCTGTCTACTGAATCGATTGA 1971
Query 1975 AAGGGAATGGTCAAGAAATAGACATTACAACCCTTAAGCTAGAGAATGAGTTGAAGATGC 2034
| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1972 AGGGGAATGGTCAAGAAATAGACATTACGACCCTTAAGCTAGAGAGTGAGTTGAAGATGC 2031
Query 2035 GTGTCTGCTACTTGCAAGAACAGGGACTGTCAATGTTAAATGAGAGCAGCCAGCTGTGTT 2094
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 2032 GTGTCTGCTACTTGCAAGACCAAGGACTGTCAATGTTAAATGAGAGCAGCCAGCTGTGTT 2091
Query 2095 ACAAGTTACTGAAGTTCATCAAAGGGAAATTAACTCAGCTTCCTGAAACCTATCAGGATA 2154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2092 ACAAGTTACTGAAGTTCATCAAAGGGAAATTAACTCAGCTTCCTGAAACCTATCAGGATA 2151
Query 2155 AGAATTCAGTGAAGGACGGATTAAGTGAGCAGTTTATGATTGAGTCTGAAATGAAAGTCC 2214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2152 AGAATTCAGTGAAGGACGGATTAAGTGAGCAGTTTATGATTGAGTCTGAAATGAAAGTCC 2211
Query 2215 ATGGGATAAGGCGCGGAACTGAAAACCTGAAGAGGAGTTTGCAAACGGTGACCAGTGTGG 2274
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2212 ATGGAATAAGGCGCGGAACTGAAATCCTGAAGAGGAGTTTGCAAACGGTGACCAGTGTGG 2271
Query 2275 TAGCTTCGAATTCAGAATCGTCTTCCTCAAATACTGGTAGGCCTAGGGAACAAAGAAACC 2334
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||
Sbjct 2272 TAGCTTCGAATTCAGAATCGTCTTCCTCAAGTACTGGTAGGCCTAGGAAACAAAGAGACC 2331
Query 2335 AATCAGTTGAAGAAAACTTGCGAGCAGAACTGAGTGCTGAGACCCTAATCACAAGTTTAG 2394
||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||
Sbjct 2332 AATCAGTTGAAGAAACCCTGCGAGCGGAACTGAGTGCTGAGACCCTAATCACAAGTTTAT 2391
Query 2395 TGCGGGAGAAACTGTATTCCAAGGAAAAGGAAATCGAACAGCTCCAAGCAGAACTAGCAG 2454
||||||||||||||||||| |||||| ||||||| |||||||||||||||||| ||||||
Sbjct 2392 TGCGGGAGAAACTGTATTCAAAGGAACAGGAAATTGAACAGCTCCAAGCAGAAGTAGCAG 2451
Query 2455 CAGCAGTACGAGGTAATGAGATTCTGAGATGTGAGGTCCAAAGCAGTTTAGACAACCTAT 2514
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2452 CAGCAGTACGAGGTAATGAGATTCTGAGAAGTGAGGTCCAAAGCAGTTTAGACAACCTAT 2511
Query 2515 CAGTTACAACCCACGAACTGAAAGACCTCAAGCATCAGATGTTGAAGAAGGAGGAAAGCA 2574
| ||||| ||||||||| | |||||| |||||||||||||||||||||||||||||||||
Sbjct 2512 CTGTTACGACCCACGAATTAAAAGACTTCAAGCATCAGATGTTGAAGAAGGAGGAAAGCA 2571
Query 2575 TAAGAC-GGCTCGAAAGCAATCTCCAGGAAGCGGCGAAAGAAATGGCGAGGCTGAACGCA 2633
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2572 TAA-ACCGGCTCGAAAGCAATCTCCAGGAAGCGGCGAAAGAAATGGCGAGGCTGAACGCG 2630
Query 2634 CTATTGTCAAAAGTGTCTAATGAAAGAGGCCAGATATGGAGTGAGTAT-AAACAATACGG 2692
||||||||||||||||||| ||| |||| | |||||||||| || | | ||||||| | |
Sbjct 2631 CTATTGTCAAAAGTGTCTAGTGAGAGAGACGAGATATGGAGAGATT-TGAAACAATGCTG 2689
Query 2693 TGAGAAAAACATGCTTTTGAACTCAGAGAACGAGACATTGAAAGGAATGGTAGAGAAATT 2752
||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||
Sbjct 2690 TGAGAAAAACATGCTTTTGAACTCAGAGAACCAGACATTGAAAGGGATGGTAGATAAATT 2749
Query 2753 GGAGGAGAAGGTATTAGAGAAAGAAGGAGAGATCACAATACTACAAGACACAATCGGAAG 2812
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2750 GGAGGAGAAGGTATTAGAGAAAGAAGGAGAGATCACAATACTACAAGATACAATCGGAAG 2809
Query 2813 CAAGCATCTGAATCTCCTCTCAAGTCCTGATTTCTTGGTATAAGGGTTTTTCTTTATCAT 2872
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2810 CAAGCATCTGAATCTCCTCTCAAGTCCTGATTTCTTGGTATAAGGGTCTTTCTTTATCAT 2869
Query 2873 TGTTTCTTAGACGATGGGTCA-TTCTTTGGGGCTTATAGA--TATGATTGtt-tcttctt 2928
| ||||||||| ||| |||| |||||||||| ||||||| ||||||| || |||||||
Sbjct 2870 TCTTTCTTAGATGATATGTCAATTCTTTGGGGATTATAGAGATATGATT-TTATCTTCTT 2928
Query 2929 ttatttttacttttcttcttttGGATTGCTTATCTCAAAGCTGGATTCTCTCTAGTTTCA 2988
|||||||| ||||| | |||||||||||||||||||||||||||||||||| |||||||
Sbjct 2929 TTATTTTT-CTTTT-T-CTTTTGGATTGCTTATCTCAAAGCTGGATTCTCT--AGTTTCA 2983
Query 2989 GATTTGTACTTAAAAATGGGCTTATAAACTTAGTGGTGAAGTTTATG-GTAAAGAAAGTT 3047
|||||||||||| ||| |||||||||||||| | |||||| |||||| | ||||||||||
Sbjct 2984 GATTTGTACTTACAAA-GGGCTTATAAACTT-G-GGTGAAATTTATGAG-AAAGAAAGTT 3039
Query 3048 TGTCATTTGACTC 3060
|||||||||||||
Sbjct 3040 TGTCATTTGACTC 3052
> Ahg482949 jgi|Araly1|482949|fgenesh2_kg.4__2009__AT2G39300.1
Length=2358
Score = 680 bits (368), Expect = 0.0
Identities = 848/1070 (79%), Gaps = 71/1070 (7%)
Strand=Plus/Plus
Query 1086 GAGCTAGAAATGAAAAT-TAAAGAAGCTGAGAAGAGAGCT-AAATTGTTTTCTGCAGAAT 1143
|||||||||| ||| || |||||||||||||||||||| | || ||| |||||| ||||
Sbjct 817 GAGCTAGAAA-GAAGATATAAAGAAGCTGAGAAGAGAG-TGAAGTTGCTTTCTGAAGAAC 874
Query 1144 TGGAGCAGCAG-AGATGCCTTTCAGACTGTGACTTCGATGTTTCATCTTTGGTTGGG-GC 1201
||||| | || || | |||||||||||||| |||||| |||||||||||| |||| |
Sbjct 875 TGGAGGAAAAGAAG-TTTCTTTCAGACTGTGATTTCGATATTTCATCTTTGG-TGGGAG- 931
Query 1202 A-ATTAGA-AAACTGGAAGATGAGAGGCTCCACTTGGCATTTG-AGAATGTAAATCTCTT 1258
| |||||| ||| ||||||| |||||| | |||||| |||| || | ||| ||| ||
Sbjct 932 ATATTAGACAAA-TGGAAGAAGAGAGGGTAGGCTTGGCTTTTGAAG-TTTTAAGTCTTTT 989
Query 1259 -ACGGTCCCAAATAGTTGAGAGGGCTTCTGCTAGGGAAGAAATCAGATGGTTGAAGTCA- 1316
| |||| ||||| | ||||||||||||| |||||||||| |||||| || | ||| |
Sbjct 990 GA-GGTCACAAATGGATGAGAGGGCTTCTACTAGGGAAGATATCAGACGGGTAAAG-AAT 1047
Query 1317 GATTGGGACTTGCATATACAGAGACTAGAAAAG-GAGAAGAGCGAGCTGCAGGCTGGA-T 1374
|||||||||||||||||| || |||||| |||| || ||||| ||| | || ||| || |
Sbjct 1048 GATTGGGACTTGCATATAAAGCGACTAG-AAAGAGACAAGAGTGAGTTACAAGCT-GAGT 1105
Query 1375 TGGAGAAAGAGCTTGATAGAAGATCAGGTGAGTGGACGTCAAA-ACTCGAAAAATTCCAG 1433
|||||||||||||||||||||| ||| |||||||||| | ||| | |||| | ||| ||
Sbjct 1106 TGGAGAAAGAGCTTGATAGAAGGTCAAGTGAGTGGACTTTAAAGA-TCGAGAGTTTCAAG 1164
Query 1434 CTTGAAGAGAAGAAGCTCCGAGAGCGTGTAAGAGAGCTTGCTGAGCATAATGTCTCACTC 1493
| || |||||| ||| | || ||||| |||||||||||||||||||||||||||||
Sbjct 1165 GTGGAGGAGAAGCGGCTGAGGGAACGTGTCAGAGAGCTTGCTGAGCATAATGTCTCACTG 1224
Query 1494 CAGAGAGAACTATCTG-C-TTTCCACGAAAATGAGACAGAGAACAAAGACATGATAACAC 1551
||||||||| |||| | | |||| | ||||| || || ||| | || ||||||| ||
Sbjct 1225 CAGAGAGAAATATC-GACGTTTC-ATGAAAAGGAAACTGAGCGTATCGATATGATAAGAC 1282
Query 1552 ATTTGGAGAGAAG-AGTTGCTGAGCTGACCACAACAGCAGAT-AAATTGCATGAAGAGAA 1609
||||||| |||| |||||| ||| | | |||||||||| ||| || ||||| ||
Sbjct 1283 ATTTGGAT-GAAGCAGTTGCGGAGTTAAGTGCAACAGCAGAGGAAAC-GCGCGAAGAAAA 1340
Query 1610 CAAT-TATGTTAAACAAA-CTCTCTCCAAGTTACAAGAGAGTTACGCAGGT-GCTACAGA 1666
| | ||| ||| |||| | ||||||||||||||||| |||||| | ||| | ||| ||
Sbjct 1341 CT-TGTATCTTATGCAAAAC-CTCTCCAAGTTACAAGAAAGTTACACTGGTAG-TACCGA 1397
Query 1667 AGATCTTGATTTCTTGAGAAGAAACTTTGAAGAGAAGGATCAAG-AATGCAGGGAGTTGC 1725
|||||||||| | | |||||||||||||||||||| ||| | | |||||| |||||| |
Sbjct 1398 TGATCTTGATTGCGTAAGAAGAAACTTTGAAGAGAAAGAT-ATGGAATGCAAGGAGTTAC 1456
Query 1726 ACAAATCTGTTACAAAGTTTT-TCAGAACTTGCAAAGAACAAGGGAAGACAATTGAGGGA 1784
||||||||||||||| | ||| | ||||| ||||||||||||| ||||||||| |||||
Sbjct 1457 ACAAATCTGTTACAA-GATTTCTAAGAACCTGCAAAGAACAAGAGAAGACAATCCAGGGA 1515
Query 1785 CTTCGAGATGGTGTT-TCTGAGGAGGTTAAGAAGCAACCG-TCAGAGAAATTAGACCAGT 1842
||| |||||||| || |||||||| |||||||||||||| | |||| | | | |
Sbjct 1516 CTTAGAGATGGT-TTCTCTGAGGAAATTAAGAAGCAACCGAT-AGAGCA-T--G-----T 1565
Query 1843 TGGTCAAGAAA-TTGCAGGTCGAGCAGGTAAGGTTGACAGG-GATCGAGCTT-TCACTTA 1899
|| |||||| || ||| | || || |||||||| ||| | | || || |||||||
Sbjct 1566 -GGACAAGAAGCTT-CAGATGGAACAAATAAGGTTGGTAGGAGTT-GAA-TTGTCACTTA 1621
Query 1900 GAAGGGAAGTAGAATCAATGAAGCTTGAAACTGACT-CTCTTCGCCATGAAAATATCTGT 1958
||| ||| ||||||||||||||||| ||| ||| | ||||| | | ||| |||| || |
Sbjct 1622 GAAAGGAGGTAGAATCAATGAAGCTCGAATTTGA-TGCTCTTTGTCGTGAGAATAACTCT 1680
Query 1959 CTACTGAATCGATTGAAAGGGAATGGTCAAGAAA-TAGACATTACAACCCTT-AAGCTAG 2016
|| ||||||||| | ||||| ||||| ||||| | ||||||| ||| || |||||||
Sbjct 1681 CTGCTGAATCGAGTAAAAGGAAATGGAGAAGAAGCTT-ACATTACGACC-TTCAAGCTAG 1738
Query 2017 AGAATGAGTTGAAGATGCGTGTCTGCTACTTGCAAGAACAGGG-ACTGTCAATGTTAAAT 2075
| |||||| ||||||||||||| ||| |||||||||| || || | | ||||||||||||
Sbjct 1739 ATAATGAGATGAAGATGCGTGTATGCCACTTGCAAGACCAAGGTA-TATCAATGTTAAAT 1797
Query 2076 GAGAGCAGC-CAGCTGTGTTACAAGTTACTGAAGTTCATCAAAGGGAAAT 2124
||||| | | ||||| ||||||||||| ||||| ||||||||| |||||
Sbjct 1798 GAGAGTA-CTCAGCTATGTTACAAGTTTCTGAAAATCATCAAAGAGAAAT 1846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115565803330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5