BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55070.1
Length=1601
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485927 jgi|Araly1|485927|fgenesh2_kg.5__1919__AT3G55070.1 2588 0.0
> Ahg485927 jgi|Araly1|485927|fgenesh2_kg.5__1919__AT3G55070.1
Length=1601
Score = 2588 bits (1401), Expect = 0.0
Identities = 1538/1604 (96%), Gaps = 10/1604 (1%)
Strand=Plus/Plus
Query 5 ATCAATCAATCAAGATCACCACCACAAGGCAAAATCTAAACTCTCTCTGCAAAATTTCTG 64
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct 1 ATCAATCAATCAAGATCACCACCACAAGGCAAAATCTAAACTCTCTCTGCGAACTTTGTG 60
Query 65 CTAACTTCTTCCTCCCATTTTCTTGCCATGGAAATCGATTCCGCCACCAACGGAAACTCT 124
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTAACTTCTTTC-CCCATTTTCTTGCCATGGAAATCGATTCCGCCACCAACGGAAACTCT 119
Query 125 GACACCGTCATGACGGAATCCGCCGCTACGATCACTCCGTCGCCGGTCGTCGTCTCGTCT 184
||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 120 GACGCCGTCATGACGGAATCCACCGCTACGATCACTCCGTCGCCGGTCGTCGTCCCGTCT 179
Query 185 TCGAGATCGAATCAATTTACGGAATCTCTCAAGCTTGAGCACCAGCTCCTCCGCGTTCCT 244
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 180 TCGAGATCGAATCAATTTACTGAATCGCTCAAGCTTGAGCACCAGCTCCTCCGCGTACCT 239
Query 245 TTCGAGCATTACAAGAAGACGATCCGTACCAATCACCGTTCTTTCGAGAAAGAGGTCTCA 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 240 TTCGAGCATTACAAGAAGACGATCCGTACCAATCACCGTTCTTTCGAGAAAGAGGTATCA 299
Query 305 ACCATTGTTAACGGCGTCGGAGAATTGGCTGATTCCGATTGGTCTAAAGACGATACCGTT 364
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 300 ACTGTTGTTAACGGCGTCGGAGAATTGGCTGATTCCGATTGGTCTAAAGACGCCACCGTT 359
Query 365 TCGCGTCTTACTTGCCTTGTTACTCGATTACAAGGCCTCAAACGAAAGTTGGAAGAAGGG 424
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCGCGTCTTACTAGCCTTGTTACTCGATTACAAGGCCTCAAACGAAAGTTGGAAGAAGGG 419
Query 425 AGCAATGTGGAGAATTTGCAAGCCCAGAGATGTCGTGCTCGCATCGATCATTTGGATTCA 484
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGCAATGTGGAGAATTTACAAGCCCAGAGATGTCGTGCTCGCATCGATCATTTGGATTCA 479
Query 485 GTAGATGTGGAAAATATTACTGAATGGAATAATACCAAACTGAAACGGATTCTTGTAGAC 544
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 480 GTAGATGTGGAAAATATTACTGAATGGAACAATACAAAACTGAAACGGATTCTTGTGGAC 539
Query 545 TACATGCTGCGGATGTCATATTTCGAGACTGCTACAAAGCTTTCGGAAAGCAGCAATATT 604
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 540 TATATGCTGCGGATGTCATATTTCGAGACTGCTACAAAGCTTTCAGAAAGCAGCAATATT 599
Query 605 ATGGACCTTGTCGACATTGACATATTTCGAGAAGCTAAGAAGGTGATTGATGCCCTTAAA 664
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 600 TTGGACCTTGTCGACATTGACATATTTCGAGAAGCTAAGAAGGTGATTGACGCCCTTAAA 659
Query 665 AATAGGGAGGTAGCTTCTGCATTGACATGGTGTGCTGATAACAAAACGCGGTTGAAAAAG 724
|||| ||||||||||||||||||| |||||||||||||||| ||||| ||| ||||||||
Sbjct 660 AATAAGGAGGTAGCTTCTGCATTGGCATGGTGTGCTGATAATAAAACCCGGCTGAAAAAG 719
Query 725 TCAAAGAGCAAATTTGAGTTCCAACTAAGGCTGCAAGAATTCATCGAGTTGGTACGAGTT 784
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 720 TCAAAGAGCAAATTTGAGTTCCAGCTAAGGCTGCAAGAATTCATTGAGTTGGTACGGGTT 779
Query 785 GATACAGCTGAGAGCTACAAAAAAGCAATCCAGTATGCTCGAAAGCATCTGGCATCATGG 844
||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 780 GATACAGCTGACAGCTACCAAAAAGCAATCCAGTATGCTCGAAAGCATCTAGCATCATGG 839
Query 845 GGAACAACCCATATGAAAGAATTGCAGCATGTTCTGGCCACTTTGGCTTTTAAAAGTACC 904
||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 840 GGAGCAACCCATATGAATGAATTGCAGCATGTCCTGGCCACTTTGGCTTTTAAAAGTACT 899
Query 905 ACAGAATGCTCAAAATATAAGGTTTTGTTTGAACTACGACAGTGGGATGTTTTAGTTGAT 964
|||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 900 ACAGAATGCTTAAAATATAAGGTTTTGTTTGAACCACAACAGTGGGATGTTTTAGTTGAT 959
Query 965 CAGTTTAAACAAGAATTTTGCAAGTTATATGGCATGACGATGGAACCCTTATTGAACATC 1024
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 960 CAGTTTAAACAAGAATTTTGCAAGTTATATGGCATGACAATGGAACCCTTATTGAACATC 1019
Query 1025 TACTTACAGGCAGGCTTGTCTGCGCTGAAAACTCCATATGGTTTAGAAGAAGGTTGTACC 1084
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1020 TACTTACAAGCAGGCTTGTCTGCGCTGAAAACTCCATATGGTTTTGAAGAAGGTTGTACC 1079
Query 1085 AAAGAGGACCCTCTCTCACAAGAGAACTTTCGGAAGCTAGCTTTGCCTTTACCGTTCTCC 1144
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1080 AAAGAGGACCCGCTCTCACAAGAGAACTTCCGGAAGCTAGCTTTGCCTTTACCGTTCTCC 1139
Query 1145 AAGCAGCACCATTCAAAGCTTGTTTGCTATATTTCTAAGGAGCTAATGGACACAGAGAAC 1204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AAGCAGCACCATTCAAAGCTTGTTTGCTATATTTCTAAGGAGCTAATGGACACAGAGAAC 1199
Query 1205 CCACCACAGGTGCTGCCCAATGGCTACGTCTACAGCACCAAGGCTCTCAAGGAAATGGCG 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CCACCACAGGTGCTGCCCAATGGCTACGTCTACAGCACCAAGGCTCTCAAGGAAATGGCG 1259
Query 1265 GAAAAGAATGGAGGTAA-AATAACATGTCCAAGGACAGGGCTTGTCTGCAACTACACGGA 1323
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GAAAAGAATGGAGG-AATAATAACATGTCCAAGGACAGGGCTTGTCTGCAACTACACGGA 1318
Query 1324 GTTAGTTAAGGCATATATATCATGAACCCATATGCTCATAATCCTCACTTTGGTCACCTT 1383
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1319 GTTAGTTAAGGCATATATATCATGAACCCACATGCTCATAATCCTCACTTTGGTCGCCTT 1378
Query 1384 TTCAATGGATGACTGGGAGGACAGTATTAAGGCCAAAGAAACTGAAATTTCCAACTTTCT 1443
||||| |||||||||||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct 1379 TTCAACGGATGACTGGGAAGTCAGTATTAAGGCCAAAGAAACTGAAAATTCCAACTTTCT 1438
Query 1444 CCATTACT---CTTTGTGAATATGCACTTGCAGATAAAACTTTGCATCACTT--TAGAAA 1498
|||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1439 CCATTACTAGTCTTTGTGAATATGCACTTACAGATAAAACTTTGCATCACTTAGTAGAAA 1498
Query 1499 CAGCTCGTTCCTTTGTATATCAAGCCATTTCTTCATTTCAGTCTTATGACAATTTTCTAG 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 CAGCTCGTTCCTTTGTATATCAAGCCATTTCTTCATTTCAGTCTTATGACAATTTTCTAG 1558
Query 1559 TCAACATGGTTTTAG-TGGAAACATGTTTGGCTGCTTTGCTCTG 1601
||||||||||||||| || || |||||||| |||||||||||||
Sbjct 1559 TCAACATGGTTTTAGGTG-AAGCATGTTTGCCTGCTTTGCTCTG 1601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59992135875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5