BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55080.1
Length=1536
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324038 jgi|Araly1|324038|fgenesh1_pm.C_scaffold_5001582 2012 0.0
> Ahg324038 jgi|Araly1|324038|fgenesh1_pm.C_scaffold_5001582
Length=1422
Score = 2012 bits (1089), Expect = 0.0
Identities = 1316/1426 (92%), Gaps = 14/1426 (1%)
Strand=Plus/Plus
Query 68 ATGCTATTCTGCATTTCGACAGTGAAGCTTTTCGGGTTTCAACAAAGGCGCAATGTTAGC 127
|||||| |||||||| |||| |||||||| ||||||||||| ||| |||||||| |||||
Sbjct 1 ATGCTACTCTGCATTCCGACGGTGAAGCTGTTCGGGTTTCAGCAACGGCGCAATTTTAGC 60
Query 128 TCTTTAGCCAAGCGTTTCAGTCTCGCCGGGAAACT-AACGTTAGAGCTCCAAACTCAGGC 186
|| ||||| ||||||||||||||| ||||||| | | | ||||||| ||||||||||||
Sbjct 61 TCCTTAGCGAAGCGTTTCAGTCTCATCGGGAAA-TCACCTTTAGAGCCCCAAACTCAGGC 119
Query 187 TTCGTTGGACAATAACTTCTTACCCTGGTTAGAGCGAATTGCTGGAGCAAAGATAACTAA 246
|| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 120 CTCTTTGGACAAGGACTTCTTACCCTGGTTAGAACGAATTGCTGGAGCAAAGATAACTAA 179
Query 247 TACTCTTTCGATTGGGAAATCCACCTATGGCAGGTCACTGTTCGCCTCCAAAGTTATCTA 306
|| |||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||| |
Sbjct 180 CACGCTTTCGATTGGGAAATCCACATATGGCAGGTCACTGTTTGCCTCAAAATTTATCCA 239
Query 307 TGCTGGTGACTGCATGTTGAAAGTCCCTTTTAATGCGCAAATAACTCCAGATGAGCT-CC 365
||| || || ||||||||||||||||||||||||||||||||||||| ||||||| | ||
Sbjct 240 TGCCGGAGAATGCATGTTGAAAGTCCCTTTTAATGCGCAAATAACTCGAGATGAGTTGCC 299
Query 366 CCTCGGATATTAGAGTTTTATTGAGCAATGAAGTTGGGAATATCGGAATGCTTGCTGCTG 425
|| ||||||||||||||| ||||| | |||||||||||||||| |||| |||||||||||
Sbjct 300 CC-CGGATATTAGAGTTTCATTGACCGATGAAGTTGGGAATATTGGAAAGCTTGCTGCTG 358
Query 426 TTCTAATAAGAGAGAAGAAAATGGGTCAAAAGTCTCGATGGGTCCCTTATATCAGCCGAC 485
||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 359 TTCTATTAAGAGAGAAGAAAACGGGTCAAAAGTCTCGATGGCTCCCTTATATCAGCCGAC 418
Query 486 TTCCTCAACCTGCAGAGATGCATAGCTCGATATTTTGGGGTGAAGATGAGCTCAGCATGA 545
|||||||||||||||||||||| ||| | ||||||||||||||||||||| |||||||||
Sbjct 419 TTCCTCAACCTGCAGAGATGCACAGCACAATATTTTGGGGTGAAGATGAGTTCAGCATGA 478
Query 546 TTCGTTGTAGTGCAGTTCACCAGGAAACAGTAAAACAAAAAGCTCAGATAGAAAAGGACT 605
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 479 TTCGTTGTAGTGCAGTTCACAAGGAAACAGTAAAACAAAAAGCTCAGATAGAAAAGGAAT 538
Query 606 TTTCATTTGTAGCGCAGGCATTCAAACAACATTGTCCCATAGTAACTGAACGCCCAGATT 665
| ||||||||||| |||||||| |||||||||| | |||| || | |||||||||| |||
Sbjct 539 TCTCATTTGTAGCACAGGCATTTAAACAACATTATACCATGGTGATTGAACGCCCATATT 598
Query 666 TGGAAGATTTCATGTATGCATATGCTTTAGTGGGATCTCGTGCGTGGGAAAACTCAAAAC 725
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 599 TGGAAGACTTCATGTATGCATATGCTTTAGTGGGATCTCGTGCGTGGGAAACCTCAAAAG 658
Query 726 GCATATCACTGATTCCGTTTGCAGACTTCATGAACCATGATGGGCTTTCTGCATCAATCG 785
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GCATATCTCTGATTCCGTTTGCAGACTTCATGAACCATGATGGGCTTTCTGCATCAATCG 718
Query 786 TTTTGAGGGATGAAGACAATCAACTATCAGAGGTCACTGCAGATCGCAACTACAGTCCTG 845
||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 719 TTTTGAGCGATGAAGACAATCAACTATCAGAGGTCACAGCAGATCGTAACTACAGTCCCG 778
Query 846 GTGATGAGGTATTCATCAAGTATGGGGAATTCTCAAATGCTACACTCATGTTAGATTTTG 905
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTGATGAGGTGTTCATTAAGTATGGGGAATTCTCAAATGCTACACTCATGTTAGATTTTG 838
Query 906 GATTTACCTTTCCTTACAACATTCATGACGAGGTTCAAATCCAAATGGATGTACCGAATG 965
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GATTTACCCTTCCTTACAACATTCATGACGAGGTTCAAATCCAAATGGATGTACCGAATG 898
Query 966 ATGATCCTCTTCGCAACATGAAGCTGGGACTTCTCCAGACACATCACACTCGAACTGTCA 1025
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATGATCCTCTTCACGACATGAAGCTGGGACTTCTCCAGACACATCACACTCGAACTGTCA 958
Query 1026 AAGATATCAATATCTTTCACTCTTCTTGTGATACTTTCACAATCAAGGAAGTGAAATCTG 1085
||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 959 AAGATATCAATATATTTCACTCGTCTTGTGATACTTTCACGATCAAGGAAGTGAAATCTA 1018
Query 1086 CTAT-AGGGAAAGGAAAAGGCATTCCACAATCTCTCCGTGCATTTGCTCGTGTTCTCTGT 1144
|| | ||| ||||| | ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CT-TCAGGAAAAGGGAGAGGAATTCCACAATCTCTCCGTGCATTTGCTCGTGTTCTCTGT 1077
Query 1145 TGTATCATTCCCCAAGAGCTAAATGATTTGTCAAAAGAAGCTGCACAAAATGATGGCCGA 1204
|||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TGTACCATTCCTCAAGAGCTGAATGATTTGTCAAAAGAAGCTGCACAAAATGATGGCCGA 1137
Query 1205 CTAGCTCGGCTTCCTTTTAAAGACGGGAACAGAGAGTTGGAGGCACATAAGATCCTCTTG 1264
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||
Sbjct 1138 CTAGCTCGGCTTCCTTTTAAAGACAGGAGTAGAGAGTTGGAGGCACATAAGATCCTTTTG 1197
Query 1265 TCTCACATCAACAGATTGATTGAGGATCATAGTGTTTGCATCAAGGAAATGGAAGAAT-- 1322
||||| ||||||||||| |||||||||||||||| ||||||||||||| |||||||||
Sbjct 1198 TCTCATATCAACAGATTAATTGAGGATCATAGTGCTTGCATCAAGGAACTGGAAGAATCT 1257
Query 1323 ----GCTATTTTGTATCACAAAGATTTGCTGTTAGAAGGCAGATGGCAAGAGATCTCCTA 1378
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1258 AAATGCTATTTTGTATCACAAAGATTTGCTGTTAGAAGGAAGATGGCAAGAGATCTCCTA 1317
Query 1379 TACGGTGAGCTTCGTGTACTGAGATCTGCAGCTGAATGGCTCAATCATTATTGCACAACC 1438
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TCCGGTGAGCTTCGTGTTCTGAGATCTGCAGCTGAATGGCTCAATCATTATTGCACAACC 1377
Query 1439 TTGCTTTCAGAGACAAT-GTAATCGATTTTACAGTCTCTACGATAG 1483
||| |||||| ||| | | || || ||||||||||||||| ||||
Sbjct 1378 TTGTTTTCAGTGACT-TCGAAACCGGTTTTACAGTCTCTACAATAG 1422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57516269950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5