BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55090.1
Length=2211
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938438 jgi|Araly1|938438|scaffold_502629.1 3465 0.0
Ahg482955 jgi|Araly1|482955|fgenesh2_kg.4__2015__AT2G39350.1 1607 0.0
Ahg485729 jgi|Araly1|485729|fgenesh2_kg.5__1721__AT3G53510.1 263 4e-69
> Ahg938438 jgi|Araly1|938438|scaffold_502629.1
Length=2252
Score = 3465 bits (1876), Expect = 0.0
Identities = 2100/2211 (95%), Gaps = 4/2211 (0%)
Strand=Plus/Plus
Query 1 ATGTCTCGCATACTAGTAGAAGATGATAATGCAACACCGTTTCATTCCATGGAGATTATT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGTCTCGCATACTAGTAGAAGATGATAATGCAACACCGTTTCATTCCATGGAGATTATT 80
Query 61 AGCTCATCTTTGACTTTAGGCCAACTTCTCAAGAACGTTAGCGACGTTCGTAAGGTTGAA 120
||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 81 AGCTCGTCGTTGACTTTAGGTCAACTTCTCAAGAACGTTAGCGACGTTCGAAAGGTACAA 140
Query 121 GTTGGTGACGAAACTCCTGTTCATGAATTCTTTGACAGGGATGGTTCTTCACTTGACGGA 180
|| |||||||| |||||||||||||| ||||||||| | || ||||| ||||||||||||
Sbjct 141 GTCGGTGACGAGACTCCTGTTCATGAGTTCTTTGACCGAGACGGTTCATCACTTGACGGA 200
Query 181 GATAATGATCATCTTATGCGTCCTGTTCCTTTCGTTCTATCTTTCAACAACCTTACTTAC 240
||| |||||||||| |||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 201 GATGATGATCATCTCATGCGTCCTGTTCCCTTCGTTCTATCTTTCAACAATCTCACTTAC 260
Query 241 AACGTCTCTGTTCGCCGGAAACTTGACTTTCACGACCTGGTTCCATGGAGGAGGACATCT 300
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 261 AACGTCTCTGTTCGCCGGAAACTTGAGTTTCACGACCTGGTTCCATGGAGGAGGTCATCT 320
Query 301 TTCTCCAAGACCAAGACTCTTCTAGACAATATCTCCGGTGAGACTCGTGACGGAGAGATT 360
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 321 TTCTCCAAGACCAAGACACTTCTAGACAATATCTCCGGTGAGACACGTGACGGAGAGATT 380
Query 361 CTTGCCGTTCTTGGAGCTAGCGGGTCAGGTAAATCCACTTTGATCGACGCTTTAGCGAAT 420
||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 381 CTTGCCGTTCTTGGAGCTAGCGGGTCAGGTAAATCCACTCTCATTGACGCTTTAGCGAAT 440
Query 421 CGGATCGCTAAAGGAAGCTTGAAGGGCACGGTAACGCTTAACGGAGAAGCTCTTCAATCT 480
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 441 CGGATCGCTAAAGGAAGCTTGAAAGGCACGGTAACTCTTAACGGAGAAGCTCTTCAATCT 500
Query 481 CGGATGCTGAAAGTTATCTCAGCTTATGTAATGCAAGACGATCTTCTCTTCCCGATGCTT 540
|||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 501 CGGATGCTCAAGGTTATATCAGCGTATGTAATGCAAGACGATCTTCTCTTCCCGATGCTT 560
Query 541 ACTGTGGAAGAAACCTTAATGTTTGCAGCTGAGTTTCGATTACCAAGAAGCTTACCTAAA 600
|| || |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 561 ACAGTAGAAGAAACCTTAATGTTTGCAGCTGAGTTTCGCTTACCAAGAAGCTTGCCTAAA 620
Query 601 TCCAAGAAGAAGCTTCGAGTTCAAGCCCTAATCGACCAGTTAGGGATAAGAAACGCTGCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 TCCAAGAAGAAGCTTCGAGTTCAAGCCCTAATCGACCAGTTAGGGATAAGAAACGCTGCT 680
Query 661 AAAACAATCATTGGAGACGAAGGACACCGTGGAATCTCCGGTGGAGAAAGAAGGCGAGTT 720
||||||||||| ||||| ||||| |||||||||||||| ||||||||| ||||||||||
Sbjct 681 AAAACAATCATCGGAGATGAAGGGCACCGTGGAATCTCTGGTGGAGAACGAAGGCGAGTC 740
Query 721 TCGATCGGAATCGATATCATCCACGACCCGATTGTTCTCTTCCTCGACGAACCTACTTCT 780
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TCAATCGGAATCGACATCATCCACGACCCGATTGTTCTCTTCCTCGACGAACCTACTTCT 800
Query 781 GGTTTAGATTCCACAAGTGCTTTCATGGTGGTTAAAGTATTGAAGAGAATCGCAGAGAGT 840
|||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 801 GGTTTAGATTCCACAAGTGCATTCATGGTGGTTAAAGTGTTGAAGAGAATAGCAGAGAGT 860
Query 841 GGCAGTATCATTATAATGTCAATACATCAGCCAAGTCACAGAGTTCTCAGTTTACTTGAT 900
||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 861 GGCAGTATCGTAATAATGTCAATACATCAGCCAAGTCACAGAGTTCTCAGTTTGCTTGAT 920
Query 901 CGTCTTATCTTCTTGTCACGTGGACACACCGTCTTTAGTGGTTCTCCGGCGAGTCTACCG 960
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 921 CGTCTTATCTTCTTGTCACGTGGTCACACCGTCTTCAGTGGTTCCCCGGCGAGTCTACCG 980
Query 961 AGCTTTTTCGCCGGGTTCGGTAATCCGATACCGGAAAACGAGAATCAAACGGAGTTTGCA 1020
| |||||||||||| || || ||||||||||| |||||||||||||||||||||||||||
Sbjct 981 ACCTTTTTCGCCGGATTTGGCAATCCGATACCAGAAAACGAGAATCAAACGGAGTTTGCA 1040
Query 1021 CTCGATCTAATCAGAGAACTCGAAGGATCAGCTGGAGGAACAAGAGGATTAGTTGAATTC 1080
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1041 CTCGATCTCATCAGAGAACTCGAAGGATCGGCTGGAGGAACCAGAGGATTAGTTGAATTC 1100
Query 1081 AACAAGAAATGGCAAGAGATGAAGAAACAGAGCAATCCTCAAACCCTAACTCCGCCGGCT 1140
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1101 AACAAGAAATGGCAAGAGATGAAAAAACAGAGCAATCCTCAAACCCTAACTCCGCCGGCT 1160
Query 1141 TCTCCAAACCCAAATTTAACCTTGAAAGAAGCGATTTCCGCCAGCATAAGCAGAGGAAAA 1200
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||
Sbjct 1161 TCTCCAAACCCAAATTTAACCCTGAAAGAGGCGATTTCCGCCAGCATAAGCAGAGGTAAA 1220
Query 1201 CTAGTCTCCGGTGGCGGCGGTGGTTCCTCCGTCATAAACCACGGTGGCGGAACCTTAGCC 1260
||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1221 CTAGTCTCCGGCGGCGGCGCTGGTTCCTCCGTTATAAACCACGGTGGCGGAACCTTAGCC 1280
Query 1261 GTCCCTGCATTCGCGAATCCGTTCTGGATCGAAATCAAAACTCTCACC-AGACGCTCAAT 1319
||||| ||||||||||||||||||||||| |||||||||||||||||| | |||||||||
Sbjct 1281 GTCCCCGCATTCGCGAATCCGTTCTGGATGGAAATCAAAACTCTCACCCA-ACGCTCAAT 1339
Query 1320 CCTCAACTCCCGACGACAACCGGAGCTACTCGGAATGCGATTAGCCACCGTAATCGTCAC 1379
||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1340 CCTCAACTCCCGAAGACAACCTGAACTACTCGGAATGCGATTAGCCACCGTAATCGTCAC 1399
Query 1380 CGGATTCATCTTAGCCACCGTATTCTGGCGATTGGATAATTCACCAAAAGGAGTTCAAGA 1439
||| ||||||||||||||||| || |||||||| || |||||||||||||| || |||||
Sbjct 1400 CGGTTTCATCTTAGCCACCGTGTTTTGGCGATTAGACAATTCACCAAAAGGCGTACAAGA 1459
Query 1440 GCGGTTAGGGTTCTTCGCATTCGCAATGTCAACAATGTTCTACACTTGCGCCGATGCTCT 1499
|||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1460 GCGGCTAGGGTTCTTCGCCTTCGCGATGTCAACAATGTTCTACACTTGCGCCGATGCTCT 1519
Query 1500 TCCCGTGTTCCTCCAGGAACGTTACATCTTCATGAGAGAAACAGCTTACAACGCTTACCG 1559
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1520 TCCCGTATTTCTCCAGGAACGTTACATCTTCATGAGAGAAACAGCTTACAACGCATACCG 1579
Query 1560 GAGATCCTCCTACGTTCTCTCTCACGCCATTGTTACCTTCCCTTCGCTCATCTTCCTCTC 1619
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1580 GAGATCCTCCTACGTTCTCTCTCACGCCATTGTTACCTTCCCTTCCCTCATCTTCCTCTC 1639
Query 1620 TTTAGCTTTCGCAGTGACGACGTTTTGGGCTGTTGGGCTTGAAGGAGG-CCTAATGGGCT 1678
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1640 TTTAGCTTTCGCAGTGACGACGTTTTGGGCTGTTGGGCTTGAAGGAGGTCC-AATGGGCT 1698
Query 1679 TTTTATTCTACTGCTTAATCATCTTAGCCTCTTTCTGGTCCGGAAGCTCCTTCGTGACTT 1738
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1699 TTTTGTTCTATTGCTTAATCATCTTAGCCTCTTTCTGGTCCGGAAGCTCCTTCGTGACCT 1758
Query 1739 TCTTATCCGGCGTCGTTCCACATGTGATGTTAGGCTACACGATCGTTGTTGCTATTTTAG 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1759 TCTTATCCGGCGTCGTTCCACATGTGATGTTAGGCTACACGATCGTTGTTGCTATTTTAG 1818
Query 1799 CTTACTTCTTGCTTTTCAGTGGCTTCTTCATCAACAGAGATCGAATCCCTCAGTATTGGA 1858
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1819 CTTACTTTTTGCTTTTCAGTGGCTTCTTCATCAACAGAGATCGAATCCCTAAGTATTGGA 1878
Query 1859 TTTGGTTTCATTATCTTTCTCTGGTTAAGTATCCATACGAGGCGGTTCTTCAGAACGAGT 1918
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1879 TTTGGTTTCATTATCTTTCTCTGGTTAAGTATCCGTACGAGGCGGTTCTTCAGAACGAAT 1938
Query 1919 TCTCGGATCCTACAGAATGTTTTGTGAGAGGTGTTCAGCTTTTCGACAACTCGCCTTTGG 1978
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1939 TCTCGGATCCTACGGAATGTTTTGTGAGAGGTGTTCAGCTTTTCGACAACTCGCCTTTGG 1998
Query 1979 GAGAATTGACGTATGGGATGAAGCTGAGGCTTTTGGATTCTGTGAGCCGGTCGATAGGTA 2038
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1999 GAGAATTGACGTATGGAATGAAGCTGAGGCTTTTGGATTCTGTGAGCCGATCGATTGGGA 2058
Query 2039 TGAGGATATCGAGCTCTACGTGTTTAACGACGGGTGCTGATGTTCTGAAGCAGCAAGGAG 2098
|||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 2059 TGAGGATATCTAGCTCTACGTGTTTAACGACGGGTGCTGATATTTTGAAGCAGCAAGGAG 2118
Query 2099 TGACACAGCTTAGTAAATGGAACTGCTTGCTTATCACGGTAGGTTTCGGATTCCTATTTA 2158
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2119 TGACGCAGCTTAGTAAATGGAATTGCTTGCTTATCACGGTAGGTTTCGGATTCCTTTTTA 2178
Query 2159 GGATTTTGTTTTACTTGTGTTTGTTGCTTGGGAGCAAAAACAAGAGGAGGT 2209
|| |||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 2179 GGGTTTTGTTTTACTTGTGTTTGTTACTTGGGAGCAAGAACAAGAGGAGGT 2229
> Ahg482955 jgi|Araly1|482955|fgenesh2_kg.4__2015__AT2G39350.1
Length=2439
Score = 1607 bits (870), Expect = 0.0
Identities = 1577/1915 (82%), Gaps = 62/1915 (3%)
Strand=Plus/Plus
Query 331 ATCTCCGGTGAGACTCGTGACGGAGAGATTC-TTGCCGTTCTTGGAGCTAGCGGGTCAGG 389
||||| || |||||||| || ||||||| || | || ||||| ||||||||||| || ||
Sbjct 474 ATCTCTGGCGAGACTCGAGATGGAGAGA-TCATGGCGGTTCTCGGAGCTAGCGGTTCGGG 532
Query 390 TAAATCCACTTTGATCGACGCTTTAGCGAATCGGATCGCTAAAGGAAGCTTGAAGGGCAC 449
||||| || ||||||| || |||||||||||||| ||||||||||||||||| || ||
Sbjct 533 GAAATCAACACTGATCGATGCATTAGCGAATCGGATTGCTAAAGGAAGCTTGAAAGGAAC 592
Query 450 GGT-AACGCTTAACGGAGAAGCTCTTCAATCTCGGATGCTGAAAGTTATCTCAGCTTATG 508
|| || ||| ||||||||| | ||||| ||||| ||||| ||||| || ||||| || |
Sbjct 593 AGTGAA-GCTAAACGGAGAAACACTTCACTCTCGAATGCTCAAAGTCATATCAGCCTACG 651
Query 509 TAATGCAAGACGATCTTCTCTTCCCGATGCTTACTGTGGAAGAAAC-CTTAATGTTTGCA 567
|||||||||| |||||||||||||| |||||||| || |||||||| | ||||||| ||
Sbjct 652 TAATGCAAGATGATCTTCTCTTCCCTATGCTTACCGTTGAAGAAACAC-TAATGTTCGCT 710
Query 568 GCTGAGTTTCGAT-TACCAAGAAGCTTACCTAAATCCAAGAAGAAGCTTCGAGTTCAAGC 626
||||||||||| | | || ||||| ||||||||||| |||||||||||||| || |||||
Sbjct 711 GCTGAGTTTCG-TCTTCCGAGAAGTTTACCTAAATCTAAGAAGAAGCTTCGTGTGCAAGC 769
Query 627 CCTAATCGACCAGTTAGGGATAAGAAACGCTGCTAAAACAATCATTGGAGACGAAGGACA 686
| || || |||||||| || ||||||||||||||||| || || ||||||||||| ||
Sbjct 770 TTTGATTGATCAGTTAGGTATTAGAAACGCTGCTAAAACTATTATCGGAGACGAAGGTCA 829
Query 687 CCGTGGAATCTCCGGTGGAGAAAGAAGGCGAGTTTCGATCGGAATCGATATCATCCACGA 746
||| |||||||||||||| || ||||| ||||||||||||||||| ||||| || |||||
Sbjct 830 CCGAGGAATCTCCGGTGGTGAGAGAAGACGAGTTTCGATCGGAATTGATATAATTCACGA 889
Query 747 CCCGATTGTTCTCTTCCTCGACGAACCTACTTCTGGTTTAGATTCCACAAGTGCTTTCAT 806
|| ||| ||||||||||||| ||||| || |||||||| ||||| || |||||||||||
Sbjct 890 TCCAATTCTTCTCTTCCTCGATGAACCAACCTCTGGTTTGGATTCAACGAGTGCTTTCAT 949
Query 807 GGTGGTTAAAGTATTGAAGAGAATCGCAGAGAGTGGCAGTATCATTATAATGTCAATACA 866
|||||||||||| |||||||| || || |||||||||||||| |||| ||||| || ||
Sbjct 950 GGTGGTTAAAGTGTTGAAGAGGATTGCTCAGAGTGGCAGTATCGTTATTATGTCGATTCA 1009
Query 867 TCAGCCAAGTCA-CAGAGTTCTCAGTTTACTTGATC-GTCTTATCTTCTTGTCACGTGGA 924
||| || ||||| | |||||||| |||| ||||| | || | ||||||||||| |||||
Sbjct 1010 TCAACCGAGTCATC-GAGTTCTCGGTTTGCTTGACCGGT-TAATCTTCTTGTCTCGTGGC 1067
Query 925 CACACCGTCTTTAGTGGTTCTCCGGCGAGTCTACCGAGCTTTTTCGCCGGGTTCGGTAA- 983
|||||||| | ||||| |||||||||||||| || | |||||| ||| ||||| ||
Sbjct 1068 CACACCGTGTACAGTGGATCTCCGGCGAGTCTTCCCCGTTTTTTCACCGAATTCGG-AAG 1126
Query 984 TCCGATACCGGAAAACGAGAATCAAACGGAGTTTGCACTCGATCTAATCAGAGAACTCGA 1043
|||||| ||||| |||||||||| ||||||||| || || ||||| ||| | || || ||
Sbjct 1127 TCCGATTCCGGAGAACGAGAATCGAACGGAGTTCGCGCTTGATCTCATCCGTGAGCTTGA 1186
Query 1044 AGGATCAGCTGGAGGAACAAGAGGATTAGTTGAATTCAACAAGAAATGGCAAGAGATGAA 1103
|||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1187 AGGATCCGCCGGAGGAACAAGAGGATTAGTCGAATTCAACAAAAAATGGCAAGAGATGAA 1246
Query 1104 GAAACAGAGCAATCC-TCAA--ACC-CTAACTCCGCCGGCTTCTCCAAACCCAAATTTAA 1159
|||||| | ||| || |||| ||| | ||||| || | || || |||||||| |||
Sbjct 1247 GAAACATAACAA-CCGTCAACCACCATTGACTCCTCCTTCATCACCGTACCCAAATCTAA 1305
Query 1160 C-CTTGAAAGAAGCGATTTCCGCCAGCATAAGCAGAGGAAAACTAGTCTCCGGTGGCG-- 1216
| | | |||||||| || ||||||| || ||| ||||||| | || ||||| || |
Sbjct 1306 CAC-TAAAAGAAGCAATCGCCGCCAGTATCAGCCGAGGAAAGTTGGTTTCCGGCGGTGAA 1364
Query 1217 GCGGTGGTTC-CTCCGTCATA-AACCA-CGGTGGCGGAACCT-TAGCCGTCCCTGCATTC 1272
| || | || | || | | ||||| | | || || ||||||| |||||||||
Sbjct 1365 TCCGTCGCTCACGGCG-GA-ACAACCACCAACACCACAA-CTCTAGCCGTACCTGCATTC 1421
Query 1273 GCGAATCCGTTCTGGATCGAAATCAAAACTCTCACCAGACGCTCAATCCTCAACTCCCGA 1332
|||||||| | ||||||||||||||||||||| | | ||||||||| ||||| || ||
Sbjct 1422 GCGAATCCAATGTGGATCGAAATCAAAACTCTCTCGAAACGCTCAATGCTCAATTCGAGA 1481
Query 1333 CGACAACCGGAGCTACTCGGAATGC-GATTAGCCACCGTAATCGTCACCGGATTCATCTT 1391
||||||| ||| || ||||||| | || | ||| |||| | |||||||||||||| |
Sbjct 1482 AGACAACCAGAGATATTCGGAAT-CAGAATCGCCTCCGTTGTTATCACCGGATTCATCCT 1540
Query 1392 AGCCACCGTATTCTGGCGATTGGATAATTCACCAAAAGGAGTTCAAGAGCGGTTAGGGTT 1451
|||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1541 CGCCACCGTGTTCTGGCGATTAGACAATTCACCAAAAGGAGTTCAAGAGCGGTTAGGGTT 1600
Query 1452 CTTCGCATTCGCAATGTCAACAATGTTCTACACTTGCGCCGATGCTCTT-CCCGTGTTCC 1510
|||||| ||||| |||||||||||||||||||||||||||||||| || || || || |
Sbjct 1601 CTTCGCCTTCGCGATGTCAACAATGTTCTACACTTGCGCCGATGC-ATTACCAGTTTTTC 1659
Query 1511 TCCAGGAACGTTACATCTTCATGAGAGAAACAGCTTACAACGCTTACCGGAGATCCTCCT 1570
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1660 TCCAGGAACGTTACATCTTCATGAGAGAAACTGCTTACAACGCTTACCGGAGATCCTCCT 1719
Query 1571 ACGTTCTCTCTCACGCCATTGT-TACCTTCCCTTCGCTCATCTTCCTCTCTTTAGCTTTC 1629
||||||||||||||||||| || | | ||||| ||||| ||||||||||| |||||||
Sbjct 1720 ACGTTCTCTCTCACGCCATCGTCT-CTTTCCCGTCGCTTATCTTCCTCTCCGTAGCTTTT 1778
Query 1630 GCAGTGACGACGTTTTGGGCTGTTGGGCTT-GAAGGAGGCCTAATGGGCTTTTTATTCTA 1688
|||| |||||||| |||||| || |||||| || ||||||| ||||||| |||| |||||
Sbjct 1779 GCAGCGACGACGTATTGGGCAGT-GGGCTTAGATGGAGGCCCAATGGGCCTTTTGTTCTA 1837
Query 1689 CTGCTTAATCATCTTAGCCTCTTTCTGGTCCGGAAGCTCCTTCGTGAC-TTTCTTATCCG 1747
||| || ||||| |||||||| |||||||| ||||||||||| || || ||||| ||| |
Sbjct 1838 CTGTTTGATCATTTTAGCCTCCTTCTGGTCAGGAAGCTCCTTTGTCACGTTTCT-ATCAG 1896
Query 1748 GCGTCGTTCC-ACATGTGATGTTAGGCTACACGATCGTTGTTGCTATTTTAGCTTACTTC 1806
| || ||||| | ||||||||| || ||||| ||||| |||||||||||||||||||||
Sbjct 1897 GTGTGGTTCCTAG-TGTGATGTTGGGTTACACAATCGTCGTTGCTATTTTAGCTTACTTC 1955
Query 1807 TTGCTT-TTCAGTGGCTTCTTCATCAACAGAGATCGAATCCCTCAGTATTGGATTTGGTT 1865
||| || |||||||| ||||||||||||||| | |||||||| | || |||||||||||
Sbjct 1956 TTG-TTGTTCAGTGGATTCTTCATCAACAGAAACCGAATCCCGGATTACTGGATTTGGTT 2014
Query 1866 TCATTATCTT-TC-TCTGGTTAAGTATCCATACGAGGCGGTTCTT-CAGAACGAGTTCTC 1922
|||||| | | || | |||| || || || ||||| || ||| || ||||||||||||||
Sbjct 2015 TCATTA-CATGTCAT-TGGTGAAATACCCCTACGAAGCAGTT-TTACAGAACGAGTTCTC 2071
Query 1923 GGATCCTACAGAA-TGTTTTGTGAGAGGTGTTCAGCTTTTCGACAACTCGCCTTT-GGGA 1980
||| | || || |||||||||||||| |||||| ||||||||||| | || || |||
Sbjct 2072 TGATGCGACC-AAGTGTTTTGTGAGAGGAGTTCAGATTTTCGACAACACTCCGTTAGGG- 2129
Query 1981 GAATTGAC--GTATGGGATGAAGCTGAGGCTT-TTGGATTCTGTGAGCCGGTCGATAGGT 2037
||||| || | | | ||||||||||||||| |||| | | |||||| |||| | |||
Sbjct 2130 GAATT-ACCAGAA-GTGATGAAGCTGAGGCTGCTTGG-TACAGTGAGCAAGTCGCTCGGT 2186
Query 2038 ATGAGGATATCGAGCTCTACGTGTTTAACGACGGGTGCTGATGTTCTGAAGCAGCAAGGA 2097
||| |||||| ||||| ||||||||||| || ||| | ||| |||||| | ||||||||
Sbjct 2187 GTGACGATATCTAGCTCGACGTGTTTAACTACTGGTTCGGATATTCTGACGAAGCAAGGA 2246
Query 2098 GTGACACAGCTTAGTAAATGGAACTGCTTGCTT-ATCACGGTAGGTTTCGGATTCCTATT 2156
||| ||||| ||||||||||| |||||| || ||||| || | ||| || ||| | ||
Sbjct 2247 GTGGTTCAGCTGAGTAAATGGAATTGCTTG-TTCATCACAGTTGCTTTTGGGTTCTTTTT 2305
Query 2157 TAGGATTTTGTTTTACTTGTGTTTGTTGCTTGGGAGCAAAAACAAGAGGAGGTGA 2211
|||||||||||| ||||| |||||| ||||| ||||| |||||| ||||||||
Sbjct 2306 TAGGATTTTGTTCTACTTCACTTTGTTACTTGGAAGCAAGAACAAGCGGAGGTGA 2360
> Ahg485729 jgi|Araly1|485729|fgenesh2_kg.5__1721__AT3G53510.1
Length=2610
Score = 263 bits (142), Expect = 4e-69
Identities = 466/622 (75%), Gaps = 24/622 (4%)
Strand=Plus/Plus
Query 1311 ACGCTCAATCCTCAACTCCCGACGACAACCGGAGCTACTCGGAATGCGATTAGCCA-CCG 1369
||| || || || ||||| || ||||||| |||||| |||||||||| | | | | |
Sbjct 1641 ACGATCTATACTAAACTCAAGAAGACAACCAGAGCTATTCGGAATGCGCCTCG-GAGCTG 1699
Query 1370 TAATCGTCACCGGATTCATCTTAGCCACCGTATTCTGGCGATTGGATAATTCACCAAAAG 1429
| | ||||||||| ||||| ||||||| |||||||| | | || |||||||||| ||
Sbjct 1700 TTCTAGTCACCGGAATCATCCTAGCCACAATATTCTGGAAACTAGACAATTCACCAAGAG 1759
Query 1430 G-AGTTCAAGAGCGGTTAGGGTTCTTCGCATTCGCAATGTCAACAATGTTCTACACTTGC 1488
| | | ||||| || |||||||||||||||||||||||||| |||| |||||||| ||
Sbjct 1760 GTA-TACAAGAACGTTTAGGGTTCTTCGCATTCGCAATGTCCACAACATTCTACACCTGT 1818
Query 1489 GCCGATGCTCTTCCCGTGTTCCTCCAGGAACGTTACATCTTCATGAGAGAAACAGCTTAC 1548
|| || || | || || || || || ||||| ||||| |||||||||||||||||||||
Sbjct 1819 GCAGAAGCAATACCAGTCTTTCTACAAGAACGCTACATATTCATGAGAGAAACAGCTTAC 1878
Query 1549 AACGCTTACCGGAGATCCTCCTACGTTCTCTCTCACGCCATTGT-TACCTTCCCTTCGCT 1607
|||||||||||| |||| || ||||| ||| ||||| | || | | | ||||| | ||
Sbjct 1879 AACGCTTACCGGCGATCATCATACGTCCTCGCTCACACAATAATCT-CAATCCCTGCTCT 1937
Query 1608 CATCTTCCTCTCTTTAGCTTTCGCAGTGACGACGTTTTGGGCTGTTGGGCTTGAAGGAGG 1667
|| || | || || ||||| | || || || ||||| || || || | |||||
Sbjct 1938 AATAATCTTATCCGCCGCCTTCGCCGCCACAACATTCTGGGCCGTAGGACTCGCCGGAGG 1997
Query 1668 C-CT-AATGGGCTTTTTATTCTACTGCTT-A-A-TCATCTTAGCCTCTTTCTGGTCCGGA 1722
| | || || ||| | |||| || ||| | | || || ||| | ||| || |||||
Sbjct 1998 CTCCGAA-GG-CTTCCTCTTCTTCTTCTTCACAATCCTCACAGCGT-TTTG-GG-CCGGA 2052
Query 1723 AGCTCCTTCGTGACTTTCTTATCCGGCGTCGT-TCCACATGTGATGTTAGGCTACACGAT 1781
|||||||||||||| |||||||||||||| || || ||| |||||| | || | |||| |
Sbjct 2053 AGCTCCTTCGTGACATTCTTATCCGGCGTAGTCTC-ACACGTGATGATCGGATTCACGGT 2111
Query 1782 CGTTGTTGCTATTTTAGCTTACTTCTTGCTTTTCAGTGGCTTCTTCATCAACAGAGATCG 1841
||||| || || | || || ||| | || ||| || ||||||||| |||||||||
Sbjct 2112 GGTTGTAGCAATCCTCGCATATTTCCTCCTCTTCTCCGGATTCTTCATCTCCAGAGATCG 2171
Query 1842 AATCCCTCAGTAT--TGGATTTGGTTTCATTATCTTTCTCTGGTTAAGTATCCATACGA- 1898
|||||| ||| | ||||| ||||| ||||| || || || || || || || |||||
Sbjct 2172 AATCCC--AGTCTACTGGATCTGGTTCCATTACCTCTCCCTAGTGAAATACCCTTACGAA 2229
Query 1899 GGCGGTTCTTCAGAACGAGTTC 1920
|| | |||| |||||||| |||
Sbjct 2230 GGTG-TTCTACAGAACGAATTC 2250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83227185325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5