BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55100.1
Length=2051
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485931 jgi|Araly1|485931|fgenesh2_kg.5__1923__AT3G55100.1 3016 0.0
> Ahg485931 jgi|Araly1|485931|fgenesh2_kg.5__1923__AT3G55100.1
Length=1997
Score = 3016 bits (1633), Expect = 0.0
Identities = 1881/2002 (94%), Gaps = 12/2002 (1%)
Strand=Plus/Plus
Query 1 ATGCTGCAAAGAGACGCCGTGATCGATGTTGATG-AATCTGAGATACCGCCCATTCCGTT 59
|||||||||||||||||||||||||||||||| | ||| |||||| | || | |||||||
Sbjct 1 ATGCTGCAAAGAGACGCCGTGATCGATGTTGACGCAAT-TGAGATGCAGCGCGTTCCGTT 59
Query 60 CGTCCTTGCTTTCAACGACCTCACCTATAACGTCACTCTTCAACAGCGTTTTGGTCTTCG 119
||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 60 TGTCCTCGCCTTCAACGACCTAACCTATAACGTCACTCTTCAACAACGTTTTGGTCTTCG 119
Query 120 TTTCGGACATAGCCCTGCTAAGATAAAGACACTGCTCAATGGTATCACTGGAGAGGCTAA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTTCGGACATAGCCCTGCTAAGATAAAGACACTGCTCAATGGTATCACTGGAGAGGCTAA 179
Query 180 AGAAGGAGAGATCCTAGCCATTCTTGGTGCAAGCGGAGCTGGAAAATCAACGCTTATTGA 239
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 CGAAGGAGAAATCCTAGCCATTCTTGGTGCAAGCGGAGCTGGAAAATCAACGCTTATCGA 239
Query 240 TGCATTAGCAGGACAAATAGCCGAAGGTAGCTTGAAAGGCACGGTAACTCTAAACGGAGA 299
||||||||||||||| || || ||||||||||||||||||||||| ||||||||||||||
Sbjct 240 TGCATTAGCAGGACAGATCGCGGAAGGTAGCTTGAAAGGCACGGTTACTCTAAACGGAGA 299
Query 300 AGCTTTGCAATCTCGTTTGTTGAGAGTCATATCAGCTTATGTAATGCAAGAAGATCTCCT 359
|||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 300 AGCTTTGCAATCTCGTGTGTTGAGAGTTATATCGGCTTATGTAATGCAAGAAGATCTACT 359
Query 360 TTTCCCTATGCTCACAGTCGAAGAAACTCTAATGTTCGCTGCCGAATTTAGGCTTCCGCG 419
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 TTTCCCTATGCTCACTGTCGAAGAAACCCTAATGTTCGCTGCCGAATTTAGGCTTCCGCG 419
Query 420 AAGCTTAAGCAAATCAAAGAAAAGAAACAGAGTAGAAACCCTAATAGATCAATTAGGGCT 479
|||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 420 AAGCTTTAGCAATTCAAAGAAAAGAAACAGAGTTGAAACCCTTATAGATCAATTAGGGCT 479
Query 480 CACAACTGTTAAAAACACTGTGATCGGAGATGAAGGCCATCGTGGTGTCTCCGGGGGAGA 539
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 CACAACTGTTAAAAACACAGTGATCGGAGATGAAGGCCATCGTGGTGTCTCCGGCGGAGA 539
Query 540 AAGAAGGCGTGTATCAATTGGGACCGATATTATTCACGATCCTAT-AGTCTTGTTCCTCG 598
|||||| |||||||||||||||||||| || |||||||||||||| | |||||||| |||
Sbjct 540 AAGAAGACGTGTATCAATTGGGACCGACATCATTCACGATCCTATCA-TCTTGTTCTTCG 598
Query 599 ACGAACCAACCTCAGGACTAGACTCAACTAGTGCCTTCATGGTGGTGCAAGTCTTGAAAA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ACGAACCAACCTCAGGACTAGACTCAACTAGTGCCTTCATGGTGGTGCAAGTCTTGAAAA 658
Query 659 AGATTGCACGTAGCGGCAGCATCGTAATTATGTCAATCCATCAGCCTAGTGGTCGGATTA 718
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 659 GGATTGCACGTAGTGGCAGCATCGTAATTATGTCAATTCATCAGCCTAGTGGTCGGATTA 718
Query 719 TGGAGTTTCTTGATCGTGTAATCGTCTTATCTTCTGGCCAGATTGTGTTTAGTGATTCTC 778
||||||||||||||| | | |||||||||||||||||||||| ||||||||||||||||
Sbjct 719 TGGAGTTTCTTGATCATATCATCGTCTTATCTTCTGGCCAGAGCGTGTTTAGTGATTCTC 778
Query 779 CTGCTACTCTCCCTTTGTTCTTCTCGGAATTTGGTAGTCCCATACCGGAAAAAGAGAACA 838
| |||||| |||||||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 779 CGGCTACTATCCCTTTGTTCTTCTCAGAATTTGGTAGTCCCATACCGGATAAAGAAAACA 838
Query 839 TTGCGGAATTCACACTTGACCTAATCAAAGATCTTGAAGGATC-TCCCGAAGGAACAAGA 897
|||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||
Sbjct 839 ATGCGGAATTCACACTTGACCTAATCAAAGAGCTTGAAGAATCCTCC-GAAGGAACAAGA 897
Query 898 GGTTTAGTCGAATTCAATCGAAA-TTGGCAACATAGGAAGCTAAGAGTTAGTCAAGAACC 956
|| |||||||||||||| | ||| ||||||||| | |||||| ||||||| ||||||||
Sbjct 898 GGGTTAGTCGAATTCAA-CAAAAATTGGCAACAAAAGAAGCTTAGAGTTAACCAAGAACC 956
Query 957 TCACCATAACTCATCATCTTTGGGAGAAGCCATCAATGCAAGCATTTCAAGAGGCAAACT 1016
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TCACCATAGCTCATCATCCTTGGGAGAAGCCATCAATGCAAGCATTTCAAGAGGCAAACT 1016
Query 1017 TGTCTCTACTTCATATAGATCTATTCCTTCATACGTAAATCCATGGTGGGTCGAAACCGT 1076
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 1017 TGTCACTACTTCATATAGCTCTATTCCTTCATACGTAAATCCATGGTGGGTCGAGACTGT 1076
Query 1077 AATCTTAGCTAAACGCTACATGATAAACTGGACCCGAACGCCCGAGCTTATCGGAACACG 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 AATCTTAGCTAAACGCTACATGATAAACTGGACCCGAACGCCCGAGCTTATCGGAACACG 1136
Query 1137 AGTTTTCATAGTCATGATGACCGGTTTTCTCTTGGCTACGGTTTACTGGAAAGTAGATGA 1196
||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1137 GGTTTTTATAGTCATGATGACCGGTTTTCTCTTGGCTACTGTTTACTGGAAAGTGGATGA 1196
Query 1197 CTCTCCTA-GAGGCGTCCAAGAAAGGTTAAGCTTCTTCTCCTTTGCAATGGCCACAATGT 1255
|||||| | ||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1197 CTCTCC-ACGAGGCGTCCAAGAGCGGTTAAGCTTCTTCTCATTTGCAATGGCCACAATGT 1255
Query 1256 TTTACAGTTGCGCGGATGGCTTACCCGCTTTTATCCAAGAAAGATACATTTTCTTAAGAG 1315
||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||| ||||
Sbjct 1256 TTTACAGTTGCGCCGATGGATTACCAGCTTTTATTCAAGAAAGATACATTTTCTTGAGAG 1315
Query 1316 AAACCGCGCATAACGCTTACCGAAGATCTTCCTACGTTATATCTCACTCTTTAGTAACTC 1375
|||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||
Sbjct 1316 AAACCGCGCATAACGCTTACCGAAGATCCTCCTACGTTATATCTCACTCTCTCGTAACTC 1375
Query 1376 TGCCTCATCTCTTCGCACTTTCCATAGGCTTTGCAGCGACCACGTTCTGGTTCGTTGGTC 1435
|||||||||||||||| |||||||| || |||||||| ||||| ||||||||||||||||
Sbjct 1376 TGCCTCATCTCTTCGCGCTTTCCATTGGATTTGCAGCCACCACATTCTGGTTCGTTGGTC 1435
Query 1436 TAAACGGTGGTCTGGCAGGTTTTATCTACTATCTTATGATCATCTTCGCGTCCTTCTGGT 1495
||||||| ||||| |||||||| |||||||||||| |||||||||||||||| |||||||
Sbjct 1436 TAAACGGCGGTCTCGCAGGTTTCATCTACTATCTTCTGATCATCTTCGCGTCGTTCTGGT 1495
Query 1496 CAGGATGCTCGTTT-GTTACATTTGTCTCCGGTGTGATTCCAAACGTGATGATGAGTTAC 1554
| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 CTGGATGCTC-TTTCGTTACATTTGTCTCCGGTGTGATTCCAAACGTGATGATGAGTTAT 1554
Query 1555 ATGGTCACCTTTGGCTATCTCTCATACTGCCTCCTCTTCAGCGGATTCTACGTCAACCGT 1614
||||| || |||||||| |||||||||||||| |||||||||||||||||| |||||||
Sbjct 1555 ATGGTTACATTTGGCTACCTCTCATACTGCCTTCTCTTCAGCGGATTCTACATCAACCGC 1614
Query 1615 GATCGAATCCATCTTTATTGGATATGGATTCATTACATTTCTCTGCTAAAGTATCCCTAC 1674
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1615 GATCGAATCCATCTTTATTGGATATGGATTCATTACATTTCTCTACTAAAGTATCCCTAC 1674
Query 1675 GAAGCTGTTCTGCACAACGAATTCGATGATCCCTCCCGTTGTTTCGTGAGAGGAAACCAA 1734
||||||||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 1675 GAAGCTGTTCTGCACAATGAATTTGATGATCCTTCCCGTTGTTTCGTAAGAGGAAACCAA 1734
Query 1735 GTGTTTGATAATACAATAATGGAAGGAGTATCTGAAACGACAAAGGCTAAGCTTCTGGAG 1794
|| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1735 GTTTTTGATAATACAATAATCGAAGGAGTGTCTGAAACGACAAAGGCTAAGCTTCTGGAG 1794
Query 1795 ACAATGAGCGGTTACTTGGGGATGGAGTTAACGGAATCAACGTGTTTGACGACGGGCTCT 1854
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1795 ACAATGAGCAGTTACTTGGGGATGGAGTTAACGGAATCAACGTGTTTGAGGACGGGCTCT 1854
Query 1855 GATTTGCTTAAGCAGCATGGAATTGAGCAGCTGGATAAATGGGGTTGCTTGTGGGTAACG 1914
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1855 GATTTGCTAAAGCAGCATGGAATTGAACAGCTGGATAAATGGGGTTGCTTGTGGGTAACG 1914
Query 1915 TTAGCTTGGGGATTCTTCTTTAGGATCTTGTTTTATTTTTCGTTGTTGCTTGGAAGCAAG 1974
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1915 TTAGCTTGGGGATTCTTCTTTAGGATCTTGTTTTATTTTTCTTTGTTGCTTGGAAGCAAG 1974
Query 1975 AATAAGAGGGCGTGAACGCCAT 1996
|||||||||||||||||| |||
Sbjct 1975 AATAAGAGGGCGTGAACGTCAT 1996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77132746125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5