BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55110.1
Length=2533
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485932 jgi|Araly1|485932|fgenesh2_kg.5__1924__AT3G55110.1 3740 0.0
Ahg938442 jgi|Araly1|938442|scaffold_502633.1 1818 0.0
Ahg488177 jgi|Araly1|488177|fgenesh2_kg.6__1311__AT5G13580.1 348 1e-94
> Ahg485932 jgi|Araly1|485932|fgenesh2_kg.5__1924__AT3G55110.1
Length=2493
Score = 3740 bits (2025), Expect = 0.0
Identities = 2332/2480 (94%), Gaps = 21/2480 (1%)
Strand=Plus/Plus
Query 55 TGGCTTCTAAAAGAAGATAACTAAAAATTTAAC----AAGGTTTATACTACTATGATACT 110
||||| || ||||||||||||| ||| |||||| |||| || | | || ||| ||||
Sbjct 28 TGGCTCCTGAAAGAAGATAACTGAAATTTTAACAAGTAAGGGTT-T-CCAC-ATG-TACT 83
Query 111 ACACTGTTAGCAGTTAGCTTCATCTTC-AG-CCACGCCGTTAAACTTCCATCAACCAAAA 168
|||||| | |||||||||||||| || || |||||||||| || ||||||||||
Sbjct 84 ACACTG-T-----TTAGCTTCATCTTCAAGAATACACCGTTAAACTGCCGTCAACCAAAA 137
Query 169 ATAGTTAACTAAATCGTTGAAGATGCCACGTGTTTCGGCGGAAATTTTAGATATTTCTCA 228
| |||||||| ||||||| ||||||||||||||||||||||||||||||||| | ||||
Sbjct 138 AGAGTTAACTTAATCGTTAAAGATGCCACGTGTTTCGGCGGAAATTTTAGATCTCTCTCT 197
Query 229 CACCGGCGGCAACGAGTCACCGACGCTTGGCGAACTCCTGAAAGATTTCAACGACAGTGG 288
||||||||||||| | ||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 198 CACCGGCGGCAACCAATCACCGACGCTTGCCGAACTGCTGAAAGATTTCAACGACAGTGG 257
Query 289 CCGGAAAAAATATCCCGGCGAAAATGCTCCGACTCAACACATATTGGATCTCGCTCCCGC 348
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 258 CCGGAAAAAATATCCCGGCGAAAATGCTCCGACTCATCACATCTTGGATCTCGCTCCCGC 317
Query 349 GGCTGAAACACGATCTGTGCCGTTTCTCTTATCCTTCAACAATCTCAGTTACAATGTTGT 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 318 GGCTGAAACACGATCTGTGCCGTTTCTCTTATCCTTCAACAATCTCAGTTACAATGTCGT 377
Query 409 ACTTCGCCGGCGGTTTGATTTCTCCCGGCGAAAGACCGCTTCGGTGAAGACTTTACTCGA 468
|||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 378 ACTTCGCCGGTGGTTTGATTTCTCCCGACGAAAGACCGCTTCCGTGAAGACTTTACTCGA 437
Query 469 TGATATTACAGGCGAGGCTCGTGACGGAGAAATCCTCGCCGTTCTTGGTGGAAGCGGAGC 528
|||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 438 TGATATTACAGGTGAGGCTTGTGACGGAGAAATCCTCGCCGTTCTGGGTGGAAGCGGAGC 497
Query 529 CGGAAAATCCACGTTGATAGACGCATTAGCCGGAAGAGTGGCGGAGGATAGCTTGAAAGG 588
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 498 TGGAAAATCCACTTTGATAGACGCATTAGCCGGAAGAGTGGCGGAGGATAGCCTGAGAGG 557
Query 589 CACGGTAACTCTAAACGGAGAAAAAGTTTTGCAATCTCGATTGTTGAAAGTGATATCGGC 648
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 558 CACGGTAACTCTAAACGGAGAGAAAGTTTTGCAATCTCGATTGTTGAAAGTGATCTCGGC 617
Query 649 GTATGTGATGCAAGACGATCTTCTTTTTCCGATGCTCACCGTTAAAGAAACCCTAATGTT 708
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 618 GTATGTGATGCAAGACGATCTTCTTTTTCCGATGCTCACCGTCAAAGAAACCCTAATGTT 677
Query 709 CGCTTCCGAGTTTCGTCTCCCGAGAAGTTTGCCTAAATCGAAGAAGATGGAGCGTGTTGA 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 CGCTTCCGAGTTTCGTCTCCCGAGAAGTTTGCCTAAATCGAAGAAGATGGAGCGTGTTGA 737
Query 769 AACCCTAATTGACCAACTAGGGCTTAGAAACGCGGCGGATACGGTAATCGGAGATGAAGG 828
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 AACCCTAATTGATCAATTAGGGCTTAGAAACGCGGCGGATACGGTAATCGGAGATGAAGG 797
Query 829 ACATCGTGGAGTATCTGGCGGAGAGCGACGGCGCGTGTCAATCGGAATTGATATTATACA 888
||| |||||||| |||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 798 ACACCGTGGAGTCTCTGGCGGAGAGCGACGGCGCGTGTCAATCGGGATTGATATCATCCA 857
Query 889 CGATCCTATCCTCCTCTTCCTCGACGAACCAACGTCAGGGTTAGACTCCACCAATGCGTT 948
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 858 CGATCCTATCCTCCTCTTCCTCGACGAACCAACGTCGGGGTTAGACTCCACCAATGCGTT 917
Query 949 TATGGTGGTGCAGGTTTTGAAACGAATTGCTCAGAGTGGCAGTGTCGTAATTATGTCGAT 1008
|||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||
Sbjct 918 TATGGTGGTGCAGGTTTTGAAACGAATTGCGCAGAGTGGCAGTATTGTAATTATGTCGAT 977
Query 1009 CCATCAACCTAGTGCACGTATCATTGGTTTGCTTGATCGGCTTATCATCTTATCTCACGG 1068
|||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 978 TCATCAACCTAGTGCTCGTATCATTGATTTGCTTGATCGGCTTATTATCTTATCTCACGG 1037
Query 1069 GAAGAGTGTGTTCAATGGATCTCCGGTTAGTCTTCCTTCGTTCTTCTCCAGCTTTGGCCG 1128
||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||| ||
Sbjct 1038 GAAGAGTGTGTTCAATGGATCACCGGCTAGTCTTCCTTCGTTCTTCTCCAACTTTGGTCG 1097
Query 1129 TCCCATTCCAGAGAAAGAAAACATCACAGAGTTCGCACTTGATGTCATTCGAGAGCTTGA 1188
||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 1098 TCCCATTCCGGAGAAAGAGAACATCACAGAGTTCGCACTTGATGTAATTCGAGAACTTGA 1157
Query 1189 AGGATCCTCTGAAGGAACCAGAGATTTAGTAGAATTCAACGAAAAGTGGCAACAGAACCA 1248
|||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1158 AGGATCCTCTGAAGGAACAAGAGGTTTAGTAGAGTTCAACGAAAAGTGGCAACAGAACCA 1217
Query 1249 AACTGCTAGAGCCACAACACAAAGTCGCGTATCTCTAAAAGAAGCCATCGCTGCAAGTGT 1308
| ||||| ||||||||||||||||| |||||||||| |||||||||||| ||||||||||
Sbjct 1218 ATCTGCTCGAGCCACAACACAAAGTGGCGTATCTCTTAAAGAAGCCATCACTGCAAGTGT 1277
Query 1309 TTCTAGAGGGAAACTAGTCTCTGGCTCATCTGGAGCCAATCCTATATCAATGGAAACAGT 1368
||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||
Sbjct 1278 TTCTAGAGGGAAACTAGTCTCAGGCTCATCTGGAGCCAATCCTGTTTCAATGGAAACAGT 1337
Query 1369 ATCTTCATACGCAAACCCGCCATTGGCGGAAACGTTTATCTTAGCTAAACGGTACATAAA 1428
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1338 ATCTTCATACGCAAACCCGCCATTGGCGGAAACATTTATCTTAGCCAAACGGTACATAAG 1397
Query 1429 AAACTGGATCCGCACGCCTGAGCTCATAGGAATGCGGATTGGTACTGTCATGGTGACTGG 1488
|||||||||||||||||| ||||| |||||||||||||| | ||||||||||||||| ||
Sbjct 1398 AAACTGGATCCGCACGCCGGAGCTTATAGGAATGCGGATCGCTACTGTCATGGTGACCGG 1457
Query 1489 TCTTCTCTTAGCTACTGTATATTGGAGGCTTGACAACACTCCAAGAGGTGCACAAGAGAG 1548
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 TCTTCTCTTAGCCACTATATATTGGAGGCTTGACAACACTCCAAGAGGTGCACAAGAGAG 1517
Query 1549 AATGGGCTTCTTTGCGTTCGGTATGTCCACAATGTTCTATTGTTGTGCAGACAACATCCC 1608
|||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 1518 AATGGGCTTCTTCGCGTTCGGTATGTCCACCATGTTCTACTGTTGTGCGGACAACATCCC 1577
Query 1609 TGTTTTTATCCAAGAACGATACATTTTCTTGAGAGAGACAACGCACAACGCATACAGAAC 1668
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1578 TGTTTTTATCCAAGAACGATACATTTTCTTGAGAGAGACAACGCACAATGCATACAGAAC 1637
Query 1669 ATCTTCATATGTTATATCTCACGCTCTTGTGTCTCTGCCTCAGCTACTTGCTCTCTCCAT 1728
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1638 ATCTTCATATGTCATATCTCACGCCCTTGTGTCCCTGCCTCAGCTACTTGCTCTCTCCAT 1697
Query 1729 TGCATTTGCCGCAACTACATTTTGGACCGTTGGTTTGAGCGGCGGGTTAGAGAGTTTCTT 1788
||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1698 TGCATTTGCTGCAACGACATTTTGGACTGTTGGTTTGAGCGGCGGGTTAGAGAGTTTCTA 1757
Query 1789 TTACTACTGCCTCATAATATACGCAGCCTTTTGGTCTGGATCCTCCATTGTTACTTTCAT 1848
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1758 CTACTACTGCCTCATAATCTACGCAGCCTTTTGGTCTGGTTCCTCCATTGTTACTTTCAT 1817
Query 1849 TTCCGGT-TTAATTCCGAATGTCATGATGAGTTACATGGTCACTATTGCCTATCTTTCCT 1907
|||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1818 ATCCGGTCTTA-TTCCGAATGTCATGATGAGTTACATGGCCACTATTGCCTATCTTTCCT 1876
Query 1908 ATTGTCTACTGCTGGGTGGATTCTACATCAACCGGGATCGGATACCGTTGTACTGGATAT 1967
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1877 ATTGTTTACTGCTGGGTGGATTCTACATCAACCGGGATCGGATACCGTTGTACTGGATAT 1936
Query 1968 GGTTTCATTACATTTCGCTTCTGAAGTATCCCTACGAGGCTGTTCTAATCAATGAGTTTG 2027
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1937 GGTTTCATTACATTTCGCTTCTCAAGTATCCCTACGAGGCTGTCCTAATCAATGAGTTTG 1996
Query 2028 ATGACCCGTCACGTTGTTTTGTAAAGGGAGTTCAAGTATTTGATGGTACGCTTTTGGCGG 2087
|||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1997 ATGACCCGTCTCGTTGTTTTGTTAAGGGAGTCCAAGTATTTGATGGTACGCTTTTGGCGG 2056
Query 2088 AAGTGTCCCATGTGATGAAGGTTAAGCTCCTAGATACACTGAGTGGCTCTTTAGGAACGA 2147
|||| ||||| |||||||||||||||| || |||||||||||| ||||||||||||| |
Sbjct 2057 AAGTCCCCCATATGATGAAGGTTAAGCTTCTCGATACACTGAGTAGCTCTTTAGGAACCA 2116
Query 2148 AGATAACAGAGTCCACATGCTTGAGAACAGGACCTGACTTACTTATGCAGCAAGGTATAA 2207
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2117 AGATAACAGAGTCCACATGCTTGAGAACAGGGCCTGACTTACTTATGCAGCAAGGTATAA 2176
Query 2208 CTCAATTGAGCAAGTGGGATTGCTTATGGATTACGTTAGCTTGGGGTCTCTTCTTTAGGA 2267
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 2177 CTCAATTGAGCAAGTGGGACTGCTTGTGGATTACGTTAGCTTGGGGTCTCTTCTTTAGGA 2236
Query 2268 TCTTGTTTTACTTGTCCTTGCTGTTCGGGAGTAAGAATAAGAGGACGTGAAGGTAGTCTA 2327
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2237 TCTTGTTTTACTTTTCCTTGCTGTTCGGGAGTAAGAATAAGAGGACGTGAAGGTAGTCCA 2296
Query 2328 CAAGCACAAAAACATACAACAAACGCATATAATATACGTTGTTGTAGTTTTCTAATCAAG 2387
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2297 CAAGCACAAAAACATACAACAAACGCATATAATATACGTTGTTGTAGTTTTGTAATCAAG 2356
Query 2388 TTGTAACATTTTTAATTTTGTGTCATCATGGGAATATTGTAAAAGGATTTTTTCTTAAAA 2447
||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2357 TTGTAACATCTATAATTTTGTATCATCATGGGAATATTGTAAAAGGATTTTTTCTTAAAA 2416
Query 2448 TCCTTAGTATCATAATAATTACTCGAGTACACGATTAGATTTCAACATATGATTCAGTTG 2507
||| |||||||||||| | |||| |||| |||||||||||||||||||||| |||||||
Sbjct 2417 TCCATAGTATCATAAT--T-ACTCTAGTATACGATTAGATTTCAACATATGACTCAGTTG 2473
Query 2508 AAGTTACTTAatatatatat 2527
|||||| ||||| || ||||
Sbjct 2474 AAGTTATTTAATGTAAATAT 2493
> Ahg938442 jgi|Araly1|938442|scaffold_502633.1
Length=2231
Score = 1818 bits (984), Expect = 0.0
Identities = 1681/2007 (84%), Gaps = 90/2007 (4%)
Strand=Plus/Plus
Query 375 TCTTATCCTTCAACAATC-TCAGTTACAATGTTGTACTTCGCCGGCGGTTTGATTTCTCC 433
||||| |||| ||||||| | | ||| ||||| |||| || || || ||||||||||||
Sbjct 238 TCTTAGCCTTTAACAATCTTGA-ATACGATGTTATACTACGACGTCGTTTTGATTTCTCC 296
Query 434 CGGCG-A-AAG-ACCGCTTCGGTGAAGACTTTACTCGATGATATTACAGGCGAGGCTCGT 490
||||| | ||| ||||||| ||||||||| |||||| || | || | ||||||||| ||
Sbjct 297 CGGCGAAGAAGCTCCGCTTCAGTGAAGACTCTACTCGGTGGTGTTTCCGGCGAGGCTTGT 356
Query 491 GACGGAGAAATCCTCGCCGTTCTTGGTGGAAGCGGAGCCGGAAAATCCACGTTGATAGAC 550
||||| || ||||||||||||||||||| ||| ||||| || ||||| |||||||| ||
Sbjct 357 GACGGCGATATCCTCGCCGTTCTTGGTGCAAGTGGAGCAGGGAAATCAACGTTGATCGAT 416
Query 551 GCATTAGCCGGAAGAGTGGCGGA-GGATAGCTTGAAAGGCACGGTAACTCTAAACGGAGA 609
|||||||| || ||||| ||||| ||| ||||||| ||||||||||||||||||||||||
Sbjct 417 GCATTAGCGGGGAGAGTTGCGGAGGGA-AGCTTGAGAGGCACGGTAACTCTAAACGGAGA 475
Query 610 AAAAGTTTTGCAATCTCGATTGTTGAAAGTGATATCGGCGTATGTGATGCAAGACGATCT 669
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 476 GAAAGTTTTGCAATCTCGATTGTTGAAAGTGATCTCGGCGTATGTGATGCAAGACGATCT 535
Query 670 TCTTTTTCCGATGCTCACCGTTAAAGAAACCCTAATGTTCGCTTCCGAGTTTCGTCTCCC 729
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 536 TCTTTTCCCGATGCTCACCGTGAAAGAAACCCTAATGTTCGCTTCCGAGTTTCGTCTCCC 595
Query 730 GAGAAGTTTGCCTAAATCGAAGAAGATGGAGCGTGTTGAAACCCTAATTGACCAACTAGG 789
|||||||||| |||| |||||||||||||||||||||| | |||| ||||| ||| ||||
Sbjct 596 GAGAAGTTTGTCTAAGTCGAAGAAGATGGAGCGTGTTGCAGCCCTCATTGATCAATTAGG 655
Query 790 GCTTA-GAAACGCGGCGGATACGGTAATCGGAGATGAAGGACATCGTGGAGTATCTGGCG 848
| ||| ||||||||||| | |||||||||||||| |||||||| |||||||| ||||| |
Sbjct 656 G-TTAAGAAACGCGGCGAACACGGTAATCGGAGACGAAGGACACCGTGGAGTCTCTGGAG 714
Query 849 GAGAGCGACGGCGCGTGTCAATCGGAATTGATATTATACACGATCCTATCCTCCTCTTCC 908
||||| ||||||| || ||||| ||||| |||||||| |||||||||||| |||| || |
Sbjct 715 GAGAGAGACGGCGTGTTTCAATAGGAATCGATATTATCCACGATCCTATCGTCCTGTTTC 774
Query 909 TCGACGAACCAACGTCAGGG-TTAGACTCCACCAATGCGTTTATGGTGGTGCAGGTTTTG 967
| |||||||||||||| ||| || || ||||| || ||||||||||||||||| ||||||
Sbjct 775 TTGACGAACCAACGTC-GGGATTGGATTCCACTAACGCGTTTATGGTGGTGCAAGTTTTG 833
Query 968 AAACGAATTGCTCAGAGTGGCAGTGTCGTAATTATGTCGATCCATCAACCTAGTGCACGT 1027
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 834 AAACGAATTGCTCAAAGTGGCAGTATCGTAATTATGTCGATCCATCAACCTAGTGCTCGA 893
Query 1028 ATCATTGGT-TTGCTTGATCGGCTTATCATCTTATCTCACGGGAAGAGTGTGTTCAATGG 1086
|| | ||| |||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 894 AT-AGTGGAGTTGCTTGATCGGCTTATCATCTTATCTCGTGGCAAAAGTGTGTTCAATGG 952
Query 1087 ATCTCCGGTTAGTCTTCCTTCG--TTCTTCTCC-AGCTTTGGCCGTCCCATTCCAGAGAA 1143
|||||||| ||||||||| || ||||||||| | ||| || || || || || |||||
Sbjct 953 ATCTCCGGCTAGTCTTCC--CGGATTCTTCTCCGA-CTTCGGTCGACCGATCCCGGAGAA 1009
Query 1144 AGAAAACATCACAGAGTTCGCACTTGATGTCA-TTCGAGAGCTTGAAGGATCCTCTGAAG 1202
||| |||||||||||||||||||||||| | | |||||||||| ||||||||| | |||
Sbjct 1010 AGAGAACATCACAGAGTTCGCACTTGATTT-AGTTCGAGAGCTCGAAGGATCCAATCAAG 1068
Query 1203 GAACCAGAGATTTAGTAGAATTCAACGAAAAGTGGCAACAGAACCAA-A-CTG-CT-AG- 1257
|||| | || ||||||||| |||||||||||||||||||| ||| || | | | || |
Sbjct 1069 GAACTAAAGCTTTAGTAGACTTCAACGAAAAGTGGCAACAAAAC-AAGATCAGTCTCATC 1127
Query 1258 -A----GC-C-ACAACAC-AA--AG-TCG--C--G--------T-ATCTCTAAAAGAAGC 1293
| || | |||| || || || ||| | | | |||| ||||||||||
Sbjct 1128 CAATCTGCTCCACAA-ACCAATGAGCTCGAGCCAGACCGCGCATTATCTTTAAAAGAAGC 1186
Query 1294 CATCGCTGCAAGTGTTTCTAGAGGGAAACTAGTCTCTGGCTCATCTGGAGCCAATCCTA- 1352
|||| |||||||||||||||||| ||||||||||| ||||||||| || ||||||| |
Sbjct 1187 CATCAATGCAAGTGTTTCTAGAGGCAAACTAGTCTCAGGCTCATCTAGATCCAATCCCAC 1246
Query 1353 TATCAATGGAAACAGTATCTTCATACGCAAACCCGCCATTGG-CGGAAACGTTTATCTTA 1411
| || |||||||||||||||||||||||||||||| | ||| || |||| || ||||||
Sbjct 1247 T-TCGATGGAAACAGTATCTTCATACGCAAACCCGTCGTTGTTCG-AAACATTCATCTTA 1304
Query 1412 GCTAAACGGTACATAAAAAACTGGATCCGCACGCCTGAGCTCA-TAGGAATGCGGATTGG 1470
|| |||||||| || |||||||||||||| | ||| ||||| | |||||| |||||| |
Sbjct 1305 GCCAAACGGTATATGAAAAACTGGATCCGGATGCCCGAGCT-AGTAGGAACGCGGATCGC 1363
Query 1471 TACTGTCATGGTGACTGGT-CTTCTCTTAGCTACTGTATATTGGAGGCTTGACAACACTC 1529
||| || |||||||||||| || |||||||| ||||| ||||||| ||| ||| |||| |
Sbjct 1364 TACCGTAATGGTGACTGGTTCT-CTCTTAGCCACTGTTTATTGGAAGCTAGACCACACCC 1422
Query 1530 CAAGAGGTGCACAAGAGAGAATGGGCTTCTTTGCGTTCGGTA-TGTCCACAATGTTCTAT 1588
||||||| |||||||||||| || ||| || || |||| | || ||||||||||||||
Sbjct 1423 CAAGAGGAGCACAAGAGAGATTGACCTTGTTCGCATTCG-TCGTGCCCACAATGTTCTAT 1481
Query 1589 TGTTGTGCAGACAACATCCCTGTTTTTATCCAAGAACGATACATTTTCTTGAGAGAGACA 1648
|||||| |||||| |||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1482 TGTTGTTTAGACAATGTCCCCGTTTTTATCCAAGAACGATACATTTTCTTAAGAGAGACA 1541
Query 1649 ACGCACAACGCATACAGAACATCTTCATATGTTATATCTCACGCTCTTGTGTCTCTGCCT 1708
|| ||||| || |||||||||||||||||||| ||||||||| |||| |||||||| |||
Sbjct 1542 ACACACAATGCTTACAGAACATCTTCATATGTCATATCTCACTCTCTAGTGTCTCTTCCT 1601
Query 1709 CAGCT-ACTTGCTCTCT-CCATT-GCATTTGCCGCAA-CTACATTTTGGACCGTTGGTTT 1764
||||| | |||| | || || || | |||| |||| | | ||||| ||||| ||||| ||
Sbjct 1602 CAGCTCA-TTGCCC-CTTCC-TTAGTATTTTCCGCGATC-ACATTCTGGACGGTTGGATT 1657
Query 1765 GAGCGGCGGGTTAGAGAGTTTCTT-TTACTACTGCCTCATAATATACGCAGCCTTTTGGT 1823
||||||||| |||||| ||||||| || || |||||| | || || || |||||||||
Sbjct 1658 GAGCGGCGGATTAGAGGGTTTCTTCTTT-TATTGCCTCCTGATCTATGCCTCCTTTTGGT 1716
Query 1824 CTGGATCCTCCATTGTTACTTTCATTTCCGGT-TTAATTCCGAATGTCATGATGA-GTTA 1881
||||||| ||| |||| || ||||| || ||| || ||||| || ||||| | | ||||
Sbjct 1717 CTGGATCTTCCGTTGTCACCTTCATATCAGGTGTTG-TTCCGCATATCATGTT-ATGTTA 1774
Query 1882 CATGGTCACTATTGCCTATCTTTCCTATTGTCTACTGCTGGGTGGATTCTACATCAACCG 1941
|||||| | ||| ||||||| |||| ||| ||||| || ||||||||||| |||||||
Sbjct 1775 CATGGTTGCCATTACCTATCTCGCCTACTGTTTACTGTTGAGTGGATTCTACGTCAACCG 1834
Query 1942 GGATCGGATACCGTTGTACTGGATATGGTTTCATTACATTTCGCTT-CTGAAGTATCCCT 2000
||||| |||||||| ||||||| |||||||||||| ||||| || || ||||||||||
Sbjct 1835 AGATCGAATACCGTTTTACTGGACATGGTTTCATTATATTTCA-TTGCTCAAGTATCCCT 1893
Query 2001 ACGAGGCTGTTCTA-ATCAATGAGTTTGATGACCCGTCACGTTGTTTTGTAAAGGGAGTT 2059
| ||||| || || ||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 1894 ATGAGGCAGT-CTTGATCAACGAGTTTGATGACCCGTCTCGTTGTTTTGTTAAGGGAGTC 1952
Query 2060 CAAGTATTT-GATGGTACGCTTTT-GGCGGAAGTGTCCCATGTGATG-AAGGTTAAGCTC 2116
|| || ||| || |||| ||| | || ||| ||||| || | | |||||||||||
Sbjct 1953 CAGGT-TTTCGACAGTACTCTTCTCGGAGGA-GTGTCTGAT-TCCGGGAAGGTTAAGCTT 2009
Query 2117 CTAGATACACTGAGTGGCTCTTT-AGGAACGAAGATAACAGAGTCCACATGCTTGAGAAC 2175
|| || || || |||| ||| | || ||||| |||||| ||||||||||||||||| ||
Sbjct 2010 CTTGAAACTCTCAGTGATTCTCTGAG-AACGAGGATAACGGAGTCCACATGCTTGAGGAC 2068
Query 2176 AGGACCTGACTTACTTATGCAGCAAGGTATAACTCAATTGAGCAAGTGGGATTGCTTATG 2235
|| ||||||||||| ||||||||||| |||||||||| ||||||||||||||| ||
Sbjct 2069 TGGGTCTGACTTACTTGCACAGCAAGGTATTACTCAATTGAACAAGTGGGATTGCTTGTG 2128
Query 2236 GATTACGTTAGCTTGGGGTCTCTTCTTTAGGATCTTGTTTTACTT-GTCCTTGCTGTTCG 2294
||||||||| |||| ||||||||| ||||||||||| |||||||| | ||||||||||||
Sbjct 2129 GATTACGTTTGCTTCGGGTCTCTTTTTTAGGATCTTATTTTACTTCG-CCTTGCTGTTCG 2187
Query 2295 GGAGTAAGAATAAGAGGACGTGAAGGT 2321
|||| | ||||||||||||||||||||
Sbjct 2188 GGAGCAGGAATAAGAGGACGTGAAGGT 2214
> Ahg488177 jgi|Araly1|488177|fgenesh2_kg.6__1311__AT5G13580.1
Length=2487
Score = 348 bits (188), Expect = 1e-94
Identities = 661/881 (75%), Gaps = 66/881 (7%)
Strand=Plus/Plus
Query 482 GAGGCTCGTGACGGAGAAATCCTCGCCGTTCTTGGTGGAAGCGGAGCCGGAAAATCCACG 541
|||||| | |||||||| || || || || || || | ||| || |||||||||| ||
Sbjct 511 GAGGCTAGAGACGGAGAGATACTAGCTGTGCTCGGAGCAAGTGGCTCCGGAAAATCGACA 570
Query 542 TTGATAGACGCATTAGCCGGAA--GAGTGGC-GGAGGATAGCTTGAAAGG-CACGGTAAC 597
|||| || ||||||| | || || | || |||| ||||||||||| || |||||
Sbjct 571 CTGATCGATGCATTAG-C-TAATCGAATCGCTAAAGGA-AGCTTGAAAGGAAAC-GTAAC 626
Query 598 TCTAAACGGAGAAAAAGTTTTGCAATCTCG--ATTGTTGAAAGTGATATCGGCGTATGTG 655
||||||||||| ||||| | |||| ||| | || ||||| || || || ||||||
Sbjct 627 TCTAAACGGAG---AAGTTCT-CAAT-TCGAAAATGCAGAAAGCCATCTCAGCTTATGTG 681
Query 656 ATGCAAGACGATCTTCTTTTTCCGATGCTCACCGTTAAAGAAACCCTAATGTTCGCTTCC 715
||||||||||||||||||||||||||||| || ||| |||||||| ||||||| || ||
Sbjct 682 ATGCAAGACGATCTTCTTTTTCCGATGCTTACAGTTGAAGAAACCTTAATGTTTGCCGCC 741
Query 716 GAGTTTCGTCTCCCGAGAAG--TTTGCCTAAATCGAAGAAGATGGAGC-GTGTTGAAACC 772
||||||||||| ||| |||| ||| | ||||| ||||||| | | |||| || |
Sbjct 742 GAGTTTCGTCTTCCGCGAAGCCTTT-CG-AAATCAAAGAAGA-GTCTCCGTGTCCAAGCT 798
Query 773 CTAATTGACCAACTAGGGCTTAGAAACGCGGCGGATACGGTAATCGGAGATGAAGGACAT 832
| ||||| ||| |||| ||||||||||| || |||| || |||||||||||||| ||
Sbjct 799 TTGATTGATCAATTAGGACTTAGAAACGCAGCAAATACCGTGATCGGAGATGAAGGCCAC 858
Query 833 CGTGGAGTATCTGGCGGAGAGCGACGGCGCGTGTCAATCGGAATTGATATTATACACGAT 892
|||||| | ||||| |||||| | ||||| || ||||| ||||||||||| || || |||
Sbjct 859 CGTGGAATCTCTGGAGGAGAGAGGCGGCGAGTTTCAATTGGAATTGATATCATCCATGAT 918
Query 893 CCTATCCTCCTCTTCCTCGACGAACCAACGTCAGGGTTAG-ACTCCACCAA-TGCGTTTA 950
|| || || || |||||||| |||||||| || ||||| | |||| || || ||| | ||
Sbjct 919 CCGATTCTGCTTTTCCTCGATGAACCAACCTC-GGGTTTGGACTCTAC-AAGTGC-TCTA 975
Query 951 TG-GTGGTGCAGGTT-TTGAAACGAATTGCTCAGAGTGGCAGTGTCGTAATTATGTCGAT 1008
| || | ||||| || |||||||| ||||||||||| ||| | || || ||| | |
Sbjct 976 AGTGTCATTAAGGTTCTT-AAACGAATCGCTCAGAGTGGAAGTATGGTGATCATGACTCT 1034
Query 1009 CCATCAACCTAGTGCAC-GTAT-CATTGGTTTGCTTGATCGGCTTATCATCTTATCTCAC 1066
|||||||||||| || || | | || | ||||||||||| ||| || |||| || | |
Sbjct 1035 TCATCAACCTAGTT-ACCGTCTTC-TTCGATTGCTTGATCGTCTTCTCTTCTTGTC-C-C 1090
Query 1067 G-GG--AAGAGTGTGTTCAATGGATCTCCGGTTA-GTCTTCCTTCG-TTCTT--CTCCAG 1119
| || || | ||| |||| ||||| || | | | || ||| || ||||| || ||
Sbjct 1091 GTGGCCAA-ACTGTCTTCAGCGGATCGCCTGCCATG-CTACCT-CGCTTCTTTGCTG-AG 1146
Query 1120 CTTTGGCCGTCCCA-TTCCAGAGAAA-GAAAACATCACAGAGTTCGCACTTG-ATGTCAT 1176
||||||| |||| |||| || | | |||||| ||| |||||||| ||| || | ||
Sbjct 1147 -TTTGGCCA-CCCAATTCCCGA-ACACGAAAACCGCACCGAGTTCGCT-TTGGATTTGAT 1202
Query 1177 TCGAGAGCTTGAAGGATCCTCTGAAGGAACCAGA-GATTTAGTAGAATTCAACGAAAAGT 1235
|| ||||| |||||||| ||| ||||| ||| | |||||| ||||||||| ||| ||
Sbjct 1203 CCGTGAGCTGGAAGGATCAGCTGGTGGAACAAGAAG-TTTAGTTGAATTCAAC-AAAGGT 1260
Query 1236 GGCA-ACAGAACCAAACTGCTAGAGCCAC-AACACAAAGTCGCGTATCTCT-AAAAGAAG 1292
| ||||| ||| || ||||||| ||| || | | || | || || ||||||||
Sbjct 1261 TTTAGACAGAGG-AAA--GC-AGAGCCAAGAACTCAGACTGGCCTGTC-CTTAAAAGAAG 1315
Query 1293 CCATC-GCTGCAAGTGTTTCTAGAGGGAAACTAGTCTCTGG 1332
||||| | |||||| | || | |||||| || ||||||||
Sbjct 1316 CCATCAG-TGCAAGCATCTCCAAAGGGAAGCTCGTCTCTGG 1355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95492244215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5