BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55120.1
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485933 jgi|Araly1|485933|fgenesh2_kg.5__1925__AT3G55120.1 1044 0.0
> Ahg485933 jgi|Araly1|485933|fgenesh2_kg.5__1925__AT3G55120.1
Length=853
Score = 1044 bits (565), Expect = 0.0
Identities = 721/796 (91%), Gaps = 12/796 (2%)
Strand=Plus/Plus
Query 26 TTATCAATCGAAATTCCAACCGACTCAACAATGTC-TTCATCCAACGCCTGCGCCTCTCC 84
|||||||||||||||| ||||||||||| |||||| ||| | | | | || ||||||
Sbjct 1 TTATCAATCGAAATTCGAACCGACTCAATAATGTCTTTC-T-C-A----TCCGTCTCTCC 53
Query 85 GTCACCGTTCCCCGCCGTCACGAAGCTTCATGTAGACTCCGTCACGTTTGTA-CCGTCCG 143
||| | ||||||| |||||||||||||||| || |||||||||||||||| | |||||||
Sbjct 54 GTCGCAGTTCCCCTCCGTCACGAAGCTTCAGGTCGACTCCGTCACGTTTG-ATCCGTCCG 112
Query 144 TCAAGTCACCGGCCTCCTCCAATCCATTATTCCTCGGCGGCGCCGGTGTCCGAGGCCTTG 203
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 TCAAGTCGCCTGCCTCCTCCAATCCATTATTCCTCGGCGGCGCCGGTGTCCGAGGCCTTG 172
Query 204 ATATCCAAGGTAAATTCGTGATCTTCACCGTCATTGGAGTATACCTAGAGGGTAACGCCG 263
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 173 ATATCCAAGGAAAATTCGTTATCTTCACCGTCATTGGAGTATACCTAGAGGGTAACGCCG 232
Query 264 TTCCTTCTCTATCTGTCAAGTGGAAGGGAAAAACTACGGAGGAGCTAACAGAATCTATCC 323
||||||| || || | ||||||||||| ||||||||||||||||||||||| || |||
Sbjct 233 TTCCTTCACTCTCCCTTAAGTGGAAGGGCAAAACTACGGAGGAGCTAACAGAGTCGGTCC 292
Query 324 CGTTCTTCCGTGAAATAGTCACCGGTGCGTTTGAGAAGTTTATCAAGGTGACAATGAAAC 383
|||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 293 CGTTCTTCCGTGAAATCGTCACAGGTGCGTTTGAGAAGTTTATCAAAGTGACGATGAAAC 352
Query 384 TGCCGTTAACGGGACAACAATATTCGGAGAAAGTGACGGAGAATTGTGTGGCTATATGGA 443
||||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||||
Sbjct 353 TGCCGTTAACGGGACAACAATATTCCGAGAAAGTGACGGAAAACTGTGTGGCTATTTGGA 412
Query 444 AA-CAATTAGGGCTTTATACGGACTGTGAAGCTAAAGCTGTGGAGAAGTTCTTGGAGATC 502
|| | |||||| |||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 413 AATC-CTTAGGGATTTATACGGATTGTGAAGCCAAAGCTGTGGAGAAGTTTTTGGAGATC 471
Query 503 TTCAAGGAAGAAACATTCCCTCCCGGTTCATCGATCCTCTTCGCTCTCTCCCCTACCGGC 562
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 472 TTCAAGGAAGAAACATTCCCTCCCGGTTCATCGATCCTCTTCGCTCTCTCCCCAACCGGC 531
Query 563 TCTCTTACGGTTGCGTTTTCGAAAGATGATAGTATCCCTGAAACCGGGATCGCTGTGATC 622
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||
Sbjct 532 TCTCTTACGGTTGCGTTTTCTAAAGATGATAGTATCCCTGAAACCGGGTTCGCTGTCATC 591
Query 623 GAGAACAAATTGTTGGCGGAGGCGGTTCTGGAATCTATCATCGGGAAGAACGGTGTGTCA 682
|||||||||||||||||||||||||||||||| || || |||||||||||||| |||||
Sbjct 592 GAGAACAAATTGTTGGCGGAGGCGGTTCTGGAGTCAATTATCGGGAAGAACGGAGTGTCG 651
Query 683 CCTGGCACTAGGTTAAGTGTTGCAGAAAGATTATCTCAGCTAATGATGAAGAACAAGGAC 742
||||| |||||||| ||| ||||||| |||||| || | || |||| |||||||||||
Sbjct 652 CCTGGGACTAGGTTGAGTATTGCAGAGAGATTAGCTAAACTGATGACGAAGAACAAGGTT 711
Query 743 GAAAAGGAAGTTAGTGATCACTCTGTTGAGGAAAAACTAGCCAAAGAGAACTGAGAATGA 802
||| |||| | ||| |||||||| |||| || |||||||||||||||||||||||||||
Sbjct 712 GAAGAGGACGCTAGCAATCACTCTATTGATGAGAAACTAGCCAAAGAGAACTGAGAATGA 771
Query 803 TAGatttttcttgtgt 818
||||||||||||||||
Sbjct 772 TAGATTTTTCTTGTGT 787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34501239885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5