BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55140.1
Length=1247
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485935 jgi|Araly1|485935|fgenesh2_kg.5__1927__AT3G55140.1 2019 0.0
> Ahg485935 jgi|Araly1|485935|fgenesh2_kg.5__1927__AT3G55140.1
Length=1240
Score = 2019 bits (1093), Expect = 0.0
Identities = 1191/1240 (96%), Gaps = 0/1240 (0%)
Strand=Plus/Plus
Query 8 AAACAGAAACACTTGATACGACGTCGCATAACAACGAACGATGACGTCGCTACCGTACGC 67
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 AAACAGAAACACTTAATACGACGTCGCATAACAACGACCGATGACGTCGCTACCGTACGC 60
Query 68 CGATGCCGATTGTAGCCTCAGGGCTTTAGCTGGCCGTGCAGAGGGATTCGGACGCTTCGC 127
|||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| ||
Sbjct 61 CGATGCCGATTGCAGCCTCAGGGCTTTAGCTGGCCGTGCCGAGGGTTTCGGTCGCTTTGC 120
Query 128 CGTCGGTGGTCTCCACGGCGATCTCTATGTCGTCACTTCTCTTGCAGATGATGGACCTGG 187
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 121 CGTCGGTGGTCTCCACGGCGATCTCTACGTTGTCACTTCTCTTGCAGATGATGGACCTGG 180
Query 188 GACTCTTCGTGAAGGAGGTAGGAGGAAAGAGCCGTTATGGATTGTTTTTGCAGTTTCTGG 247
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 GACTCTTCGTGAAGGAGGTAGGAGGAAAGAGCCATTATGGATTGTTTTTGCAGTTTCTGG 240
Query 248 AACTATAAATCTCAATTCATACTTGAGTGTATCGTCTTACAAGACGATTGATGGACGAGG 307
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 AACTATAAATCTGAATTCATACTTGAGTGTATCGTCTTACAAGACGATTGACGGACGAGG 300
Query 308 ACAACGAATTAAGCTCACAGGGAAAGGAATAAGATTGAAGGAATGTGAACATATCATCAT 367
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACAGCGGATTAAGCTTACAGGGAAAGGAATAAGATTGAAGGAATGTGAACATATCATCAT 360
Query 368 TTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTTGATGGTATTCAGATTAAACC 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTTGATGGTATTCAGATTAAACC 420
Query 428 AAAGTCTAGACACATTTGGATTGATCGGTGTAGTCTCCGCGATTACGATGATGGGCTTAT 487
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 421 CAAGTCTAGACACATTTGGATTGATCGGTGTAGTCTGCGCGATTACGATGATGGGCTTAT 480
Query 488 TGATATTACTAGACAAAGCACGGATATTACTGTTTCTAGATGTTATTTTGCACAGCATGA 547
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 481 TGATATTACTAGACAAAGCACGGATATCACTGTTTCTAGATGTTATTTTGCACAGCATGA 540
Query 548 CAAGACGATGCTGATTGGAGCAGATCCTTCTCATGTTGAGGATAGATGTATCCGAGTGAC 607
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 541 CAAGACGATGCTGATTGGAGCTGATCCTTCTCATGTTGAGGATAGATGTATCCGAGTTAC 600
Query 608 CATTCACCATTGTTTCTTTGATGGAACTAGGCAGAGACAACCTCGTCTCAGATTTGGAAA 667
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 601 CATTCACCATTGTTTCTTTGATGGAACCAGGCAGAGACAACCTCGTCTCAGATTTGGAAA 660
Query 668 AGTTCATTTGTACAACAACTACACAAGAAACTGGGGAATATATGCTGTTTGTGCTAGTGT 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGTTCATTTGTACAACAACTACACAAGAAACTGGGGAATATATGCTGTTTGTGCTAGTGT 720
Query 728 AGAAGCGCAGGTGTTCTCTCAATGCAATATATACGAAGCAGGAGTGAAGAAGAAAACTTT 787
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGAAGCGCAGGTATTCTCTCAATGCAATATATACGAAGCAGGAGTGAAGAAGAAAACTTT 780
Query 788 TGAATACTACTCAGAAAAGGCTGCTGACAAGGAAGAAGCGAGAACTGGGTTAGTACGATC 847
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 781 TGAATACTACTCAGAAAAGGCTGCTGACAAGGAAGAAGCGAGAGCTGGGTTAGTACGATC 840
Query 848 TGAAAATGACTTGTTCTTGAATGGAGCTCAACCTTCCTTGATGACAGGAGCCAGTGAAGA 907
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 841 TGAAAATGACTTGTTCTTGAATGGAGCTCAACCATCCTTGTTGACAGGAGCCAGTGAAGA 900
Query 908 ATGTGTATTCCATCCAAGTGAACACTACCCAACATGGACTGTGGAGCCACCATCAGAAAC 967
|||||| ||||||||||| || |||||||| |||||||| ||||||||||||||||||||
Sbjct 901 ATGTGTGTTCCATCCAAGCGAGCACTACCCGACATGGACCGTGGAGCCACCATCAGAAAC 960
Query 968 TCTCAAGCAAATCATGCAAATTTGTACCGGTTGGCAATCTTTGTCCCGTCCTTCTGATCA 1027
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 961 TCTCAAGCAAATCATGCAAATTTGTACCGGTTGGCAATCTTTATCCCGTCCTTCTGATCA 1020
Query 1028 TGGAGTTCCTAAGTAATAGTTGCGATTCAAATGTTTTCTTGCATATCATATTTCCTTCTT 1087
|||||||||||||| ||||||| ||| | | |||||||||||||||||||||||||||||
Sbjct 1021 TGGAGTTCCTAAGTGATAGTTGTGATCCGATTGTTTTCTTGCATATCATATTTCCTTCTT 1080
Query 1088 TTTCTAGTTATTGAAGGAGTGAATAATGCTTTTGTTCTTCAGCACATTATGTTTACAGTA 1147
|||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1081 TTTCTAGTTATTCAAAAAGTGAATAATGCTTTTGTTCTTCAGCACATTATGTTTACACTA 1140
Query 1148 TGCTGTGTGTGATTTTTTATGCCTTTTTCTTCTTTGTGATTTGTAATTGGCTTCTTGAAT 1207
|||| ||||||||||| ||||| |||| |||||||||||| ||||||||||||||||||
Sbjct 1141 TGCTCTGTGTGATTTTCTATGCATTTTGCTTCTTTGTGATAAGTAATTGGCTTCTTGAAT 1200
Query 1208 GTATATCACTGAATCGAATTCTTTATCAGATTTATATCAG 1247
|| |||| ||||||| ||||||||||||||||||||||||
Sbjct 1201 GTCTATCCCTGAATCAAATTCTTTATCAGATTTATATCAG 1240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46586204574
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5