BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55150.1
Length=2055
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485937 jgi|Araly1|485937|fgenesh2_kg.5__1929__AT3G55150.1 3236 0.0
> Ahg485937 jgi|Araly1|485937|fgenesh2_kg.5__1929__AT3G55150.1
Length=2036
Score = 3236 bits (1752), Expect = 0.0
Identities = 1909/1987 (96%), Gaps = 2/1987 (0%)
Strand=Plus/Plus
Query 1 AATTCAGAAAGAAGAGAATAGAGAGCTTCTTCTTCTTCAATGGCGAAAATGGCGAAATTt 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATTCAGAAAGAAGAGAACAGAGAGCTTCTTCTTCTTCAATGGCGAAAATGGCGAAATTT 60
Query 61 tctttcttctcttcgtcatctcctaaatatca-tccttcttcgccttcttcattcacttc 119
|||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 61 TCTTTCTTCTCTTCGTCATCTCCTAAGTAT-ATTCCTTCTTCGCCTTCTTCATTCACTTC 119
Query 120 tttcCCGGCTTCTCCTCTAAACCAGAACTTTACTCAGGCTATGATGGAGGAAACCGTGGA 179
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 TTTCCCGGCTTCTCCTCTGAACCAGAACTTCACTCAGGCTATGATGGAGGAAACCGTGGA 179
Query 180 GACAGCGGACTCCGTCATCAGAAAATGGGACCCGAACACGCCTTCCTTCACCAAGATTGT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 GACAGCGGACTCCGTCATCAGAAAATGGGACCCGAACACGCCTTCCTTCACCAAGATCGT 239
Query 240 CTCTCTGTTCAACCATAGCAGGAAGGAGGCTAAAGAGTTCATCAGATGTGTCCGTGATTT 299
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 CTCTCTGTTCAACCATAGCAGGAAGGAGGCCAAAGAGTTCATCAGATGTGTCCGTGATTT 299
Query 300 GCGCAGAGCGATGCACTTTCTTGTCTCTCAAGACTCTCAATCTCCAAAGCTTGCTCTAGC 359
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 GCGCAGAGCCATGCACTTTCTTGTCTCTCAAGACTCTCAATCTCCAAAGCTTGCTCTTGC 359
Query 360 TCAGACCCTGATGCAGATCGCCATGGCAAGGCTCGAAAAAGAGTTCTTCCAGATATTATC 419
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 360 ACAGACCCTGATGCAGATCGCCATGGCGAGGCTCGAGAAAGAGTTCTTCCAGATATTATC 419
Query 420 TTCAAACAGAGACAAGCTTGATCCTGAATCAGTTTCCGGTCAATCCTCAATCTCCAGCAA 479
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 TTCAAATAGAGACAAGCTTGATCCTGAATCAGTTTCTGGTCAATCCTCAATCTCCAGCAA 479
Query 480 TTCTGAATTTGAAGATGTTATGGGATCTGACGACGACGATGAAAGTGACAATGAGATGAG 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 TTCTGAATTTGAAGATGTTATGGGATCTGACGACGACGACGAAAGTGACAATGAGATGAG 539
Query 540 GAAAGCTGGCGAATCGATCACTCAGGTTGAGAAAGCTTCAGCTATGGTGATGTCTGACCT 599
|||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 540 GAAAGCTGGCAAATCGATCACTCAGGTGGAGAAAGCTTCAGCTGTGGTGATGTCTGACCT 599
Query 600 TAAGGCGATAGCAGAGAGTATGATAAGTTGCGGATATGGTAAGGAGTGCGTAAAGATTTA 659
||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 600 AAAGGCGATAGCAGAGAGTATGATCAGTTGTGGATATGGTAAAGAGTGCGTAAAGATTTA 659
Query 660 TAAGCGGGTCAGAAAATCTATTGTAGATGAAGGGCTGAGCTTGCTCGGGATTGAAATCTA 719
||||||| |||||||||| |||||||||| ||||||||||||||||||||| ||||||||
Sbjct 660 TAAGCGGATCAGAAAATCGATTGTAGATGGAGGGCTGAGCTTGCTCGGGATCGAAATCTA 719
Query 720 CAAAGGCTCCAGATTTCACAGAACGGACTGGGTCACGCTCGAGCATATGATCAAGAACTG 779
||||||||| |||||||| |||| |||||||| ||||||||||||||||||||||||||
Sbjct 720 CAAAGGCTCGAGATTTCATAGAATTGACTGGGTTACGCTCGAGCATATGATCAAGAACTG 779
Query 780 GATAAAAGCTGCAAAGATTGGCATTGCCACGCTCTTCCGTGGAGAGAAACTTCTTTGTGA 839
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GGTAAAAGCTGCAAAGATTGGCATTGCCACGCTCTTCCGTGGAGAGAAACTTCTTTGTGA 839
Query 840 TCATGTCTTTTCTGCTTCCAATTCAACAAGGGAGTCATGCTTCTACGAGATTGCAAACGA 899
|||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 840 TCATGTCTTTTCTGCTTCTAATTCAACAAGAGAGTCATGCTTTTACGAGATTGCAAACGA 899
Query 900 AGCAGCCACTAACCTTTTCAAGTTCCCTGAATTTGTTGCCAAGGAGAAGAAATCGCACGA 959
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 900 AGCAGCCATTAACCTTTTCAAGTTCCCTGAATTTGTTGCCAAGGAGAAGAAATCGCATGA 959
Query 960 GAGGATCTTCCCGCTAATGGATCTGCAGGCTGCAATCTCTGATCTCTGGCAAGACATAGA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GAGGATCTTCCCGCTAATGGATCTGCAGGCTGCAATCTCTGATCTCTGGCAAGACATAGA 1019
Query 1020 GATGATATTCCACTTTGATGCAGTAGCTGGTGTGAAATCTCAGGCGCTCACATCGCTGCA 1079
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GATGATATTCCACTTCGATGTAGTAGCTGGTGTGAAATCTCAGGCGCTCACATCGCTGCA 1079
Query 1080 AAAACTAAAGGTCTCAATCCACAGTGCTCTCACGGATTTTGAATCAATCATTCAGAAAGA 1139
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1080 AAAACTAAAGGTCTCAATCCACAGTGCTCTCACGGATTTTGAATCAACCATTCAGAAGGA 1139
Query 1140 TACGACGAAAGCTCTAACACCTGGAGGAGGGATTCATAAACTGACACGATCAACAATGAA 1199
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TACGACAAAAGCCCTTACACCTGGAGGAGGGATTCATAAACTGACACGATCAACAATGAA 1199
Query 1200 CTTCATCTCTTCCCTTTCTAAGTACAGCGGAGTCTTGTCGGAAATCCTAGCAGACCATCC 1259
||||||||||||||||||||| |||||||| |||||||| |||||| | |||||||||||
Sbjct 1200 CTTCATCTCTTCCCTTTCTAAATACAGCGGTGTCTTGTCTGAAATCTTTGCAGACCATCC 1259
Query 1260 ACTCCCGAGAAACACTCGCCTGCTGGAATCCTATGTCAGAGCTCCAATTTCGGAAGATGA 1319
||||||||||||||| |||||||| ||||| ||||||||| |||||||||||||||||||
Sbjct 1260 ACTCCCGAGAAACACCCGCCTGCTAGAATCTTATGTCAGAACTCCAATTTCGGAAGATGA 1319
Query 1320 ACAACACAATCACGCACTCTCTGTCCATTTTGCTTGGCTAATCCTGGTTTTGCTATGCAA 1379
||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 1320 ACAACACAATCACGCACTCTCGGTCCACTTTGCTTGGCTCATCCTGGTTTTGCTATGCAA 1379
Query 1380 ACTAGACACCAAAGCAGAGCATTACAAGGATGTTTCTTTGTCTTACCTTTTCCTTGCAAA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 ACTAGACACCAAAGCAGAGCATTACAAGGATGTTTCTTTGTCTTACCTTTTCCTTGCAAA 1439
Query 1440 CAACCTTCAGATCATCATTGAAACGGTTGGTTCAACTCCCCTAAGGAATCTCCTTGGAGA 1499
|||||| ||| ||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1440 CAACCTCCAGCTCATCATTGAAACGGTTCGTTCAACTCACCTAAGGAATCTCCTTGGAGA 1499
Query 1500 TGATTGGCTCAATAAGCACGAAGATAAACTCTGCGCTTATGCTGGGAATTATGAGATAGC 1559
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1500 TGATTGGCTCAATAAGCACGAAGATAAACTCGGCGCTTATGCTGGGAATTATGAGATAGC 1559
Query 1560 AGCATGGTCCAATGTTTTCATGTCTTTACCAGAAGAACCCACAGACCTATCACCAGAGGA 1619
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1560 AGCATGGTCCAATGTTTTCATGTCTTTACCAGAGGAACCCACAGACCTATCACCAGAGGA 1619
Query 1620 AGCTAAAATATATTTCAGAAGATTTCACACGGCATTTGAGGAAGCATATATGAAACAATC 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 AGCTAAAATATATTTCAGAAGATTTCACACGGCATTTGAGGAAGCATATATGAAACAATC 1679
Query 1680 ATCACGAGTTGTACCAAATGCGAAACTTAGGGACGAACTAAAGGTTTCAATAGCAAAGAA 1739
||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1680 ATCACGAGTAGTACCAAATGCGAAACTTAGGGATGAACTAAAGGTTTCGATAGCAAAGAA 1739
Query 1740 ACTTGTACCAGAATACAGAGAGTTTTACAGGAAGTACTTACCAATGCTCGGCCAGGAGAG 1799
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1740 ACTTGTACCAGAATACAGAGAGTTTTACAGGAAGTACTTACCAATGCTCGGTCAGGAGAG 1799
Query 1800 AAACATTGAGATCTTGGTGAGATTCAAGCCAGATAATTTGGAGAATTACATCTCTGATCT 1859
|||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1800 GAACATTGAGATCCTAGTGAGGTTCAAGCCAGATAATTTGGAGAATTACATCTCTGATCT 1859
Query 1860 TTTCCACGGTACACCAATTCATGCATCCTCTTCTTTTTCTTCATCTTCTTCCTCTTCATC 1919
|||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 1860 CTTCCACGGAACACCAATTCATGCATCATCTTCTTTTTCTTCATCTTCGTCGTCTTCATC 1919
Query 1920 CTGGAAATCACTTGGGTGTGTTTCAGGCTGAGAGACTTGATCCATAGTTTTGGCTAAATA 1979
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1920 CTGGAAATCACTTGGGTGTGTTTCAGGCTGAGGGACTTGATCCATAGTTTTGGCTAATTA 1979
Query 1980 TTCCATT 1986
|||||||
Sbjct 1980 TTCCATT 1986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77285107105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5