BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G55170.1

Length=647
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485940 jgi|Araly1|485940|fgenesh2_kg.5__1932__AT3G55170.2         678    0.0  
  Ahg324042 jgi|Araly1|324042|fgenesh1_pm.C_scaffold_5001586          87.9    8e-17


> Ahg485940 jgi|Araly1|485940|fgenesh2_kg.5__1932__AT3G55170.2
Length=525

 Score =  678 bits (367),  Expect = 0.0
 Identities = 414/436 (95%), Gaps = 6/436 (1%)
 Strand=Plus/Plus

Query  1    TTACTATAGCAGTGCAAAGAGACTG--AGTCAGAGAG-G-GCTCGAAGACGCCATGGCGA  56
            |||| ||||||||||||||||||||  ||  |||||| | ||||||||||||||||||||
Sbjct  1    TTACCATAGCAGTGCAAAGAGACTGAAAGAGAGAGAGAGAGCTCGAAGACGCCATGGCGA  60

Query  57   GAATCAAGGTTCATGAGTTGAGAGATAAATCAAAATCGGATCTTTCTACTCAATTGAAAG  116
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  61   GAATCAAGGTTCATGAGTTGAGGGATAAATCAAAATCGGATCTTTCTACTCAATTGAAAG  120

Query  117  AATTGAAGGCAGAGCTTGCTTC-CCTACGTGTCGCTAAGGTCACTGGTGGTGCTCCTAAC  175
            || | |||||||||||||| || ||| ||||| |||||||||||||||||||||||||||
Sbjct  121  AACTAAAGGCAGAGCTTGC-TCTCCTCCGTGTGGCTAAGGTCACTGGTGGTGCTCCTAAC  179

Query  176  AAGCTCTCTAAGATCAAAGTGGTGAGGAAGTCGATTGCGCAAGTGTTGACTGTGAGCTCA  235
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  180  AAGCTCTCAAAGATCAAAGTGGTGAGGAAGTCGATTGCGCAAGTGTTGACTGTGATCTCA  239

Query  236  CAGAAACAAAAGTCTGCTCTTAGAGAAGCATACAAAAACAAGAAGTTGTTGCCACTCGAT  295
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  240  CAGAAACAAAAGTCTGCTCTTAGAGAAGCATACAAGAACAAGAAGTTGTTGCCACTCGAT  299

Query  296  CTCCGTCCCAAGAAGACTAGAGCCATCAGAAGGAGACTCACTAAACACCAGGCGTCGCTG  355
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct  300  CTCCGTCCCAAGAAGACTAGAGCCATCAGAAGGAGACTCACTAAGCACCAGGCGTCGCTA  359

Query  356  AAGACAGAACGAGAGAAGAAGAAAGACATGTACTTTCCAATTAGAAAGTATGCCATCAAA  415
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct  360  AAGACAGAACGAGAGAAGAAGAAAGAAATGTACTTTCCAATTAGAAAGTATGCCATCAAG  419

Query  416  GTTTAATTATCTTTCT  431
            ||||||| ||||||||
Sbjct  420  GTTTAATAATCTTTCT  435


> Ahg324042 jgi|Araly1|324042|fgenesh1_pm.C_scaffold_5001586
Length=6387

 Score = 87.9 bits (47),  Expect = 8e-17
 Identities = 63/70 (90%), Gaps = 3/70 (4%)
 Strand=Plus/Plus

Query  121   GAAGGCAGAGCTTGCTTC-CCTACGTGTCGCTAAGGTCACTGGTGGTGCTCCTAACAAGC  179
             ||| || |||| ||| || ||| || ||||||||||||||||||||||||||||||||||
Sbjct  6199  GAA-GCGGAGCCTGC-TCTCCTCCGCGTCGCTAAGGTCACTGGTGGTGCTCCTAACAAGC  6256

Query  180   TCTCTAAGAT  189
             ||||||||||
Sbjct  6257  TCTCTAAGAT  6266



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23712454374


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5