BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G55170.1 Length=647 Score E Sequences producing significant alignments: (Bits) Value Ahg485940 jgi|Araly1|485940|fgenesh2_kg.5__1932__AT3G55170.2 678 0.0 Ahg324042 jgi|Araly1|324042|fgenesh1_pm.C_scaffold_5001586 87.9 8e-17 > Ahg485940 jgi|Araly1|485940|fgenesh2_kg.5__1932__AT3G55170.2 Length=525 Score = 678 bits (367), Expect = 0.0 Identities = 414/436 (95%), Gaps = 6/436 (1%) Strand=Plus/Plus Query 1 TTACTATAGCAGTGCAAAGAGACTG--AGTCAGAGAG-G-GCTCGAAGACGCCATGGCGA 56 |||| |||||||||||||||||||| || |||||| | |||||||||||||||||||| Sbjct 1 TTACCATAGCAGTGCAAAGAGACTGAAAGAGAGAGAGAGAGCTCGAAGACGCCATGGCGA 60 Query 57 GAATCAAGGTTCATGAGTTGAGAGATAAATCAAAATCGGATCTTTCTACTCAATTGAAAG 116 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 61 GAATCAAGGTTCATGAGTTGAGGGATAAATCAAAATCGGATCTTTCTACTCAATTGAAAG 120 Query 117 AATTGAAGGCAGAGCTTGCTTC-CCTACGTGTCGCTAAGGTCACTGGTGGTGCTCCTAAC 175 || | |||||||||||||| || ||| ||||| ||||||||||||||||||||||||||| Sbjct 121 AACTAAAGGCAGAGCTTGC-TCTCCTCCGTGTGGCTAAGGTCACTGGTGGTGCTCCTAAC 179 Query 176 AAGCTCTCTAAGATCAAAGTGGTGAGGAAGTCGATTGCGCAAGTGTTGACTGTGAGCTCA 235 |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 180 AAGCTCTCAAAGATCAAAGTGGTGAGGAAGTCGATTGCGCAAGTGTTGACTGTGATCTCA 239 Query 236 CAGAAACAAAAGTCTGCTCTTAGAGAAGCATACAAAAACAAGAAGTTGTTGCCACTCGAT 295 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 240 CAGAAACAAAAGTCTGCTCTTAGAGAAGCATACAAGAACAAGAAGTTGTTGCCACTCGAT 299 Query 296 CTCCGTCCCAAGAAGACTAGAGCCATCAGAAGGAGACTCACTAAACACCAGGCGTCGCTG 355 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 300 CTCCGTCCCAAGAAGACTAGAGCCATCAGAAGGAGACTCACTAAGCACCAGGCGTCGCTA 359 Query 356 AAGACAGAACGAGAGAAGAAGAAAGACATGTACTTTCCAATTAGAAAGTATGCCATCAAA 415 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 360 AAGACAGAACGAGAGAAGAAGAAAGAAATGTACTTTCCAATTAGAAAGTATGCCATCAAG 419 Query 416 GTTTAATTATCTTTCT 431 ||||||| |||||||| Sbjct 420 GTTTAATAATCTTTCT 435 > Ahg324042 jgi|Araly1|324042|fgenesh1_pm.C_scaffold_5001586 Length=6387 Score = 87.9 bits (47), Expect = 8e-17 Identities = 63/70 (90%), Gaps = 3/70 (4%) Strand=Plus/Plus Query 121 GAAGGCAGAGCTTGCTTC-CCTACGTGTCGCTAAGGTCACTGGTGGTGCTCCTAACAAGC 179 ||| || |||| ||| || ||| || |||||||||||||||||||||||||||||||||| Sbjct 6199 GAA-GCGGAGCCTGC-TCTCCTCCGCGTCGCTAAGGTCACTGGTGGTGCTCCTAACAAGC 6256 Query 180 TCTCTAAGAT 189 |||||||||| Sbjct 6257 TCTCTAAGAT 6266 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23712454374 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5