BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55180.1
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485941 jgi|Araly1|485941|fgenesh2_kg.5__1933__AT3G55180.1 1493 0.0
Ahg482959 jgi|Araly1|482959|fgenesh2_kg.4__2019__AT2G39400.1 715 0.0
> Ahg485941 jgi|Araly1|485941|fgenesh2_kg.5__1933__AT3G55180.1
Length=939
Score = 1493 bits (808), Expect = 0.0
Identities = 896/939 (95%), Gaps = 4/939 (0%)
Strand=Plus/Plus
Query 1 ATGGTTATGTACAAAGAGGATTATGTTTCGAACTCACGAGGGATACAACTTTTCACGTGT 60
||||||| ||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 1 ATGGTTACGTACAAAGAGGATTATGTTTCAAACTCACGAGGTATTCAACTTTTCACGTGT 60
Query 61 TCATGGAAACAAGAGGAGCAGCAAGAACCAAAGGCTTTAATCTTTCTCTGTCATGGCTAC 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCATGGAAACCAGAGGAGCAGCAAGAACCAAAGGCTTTAATCTTTCTCTGTCATGGCTAC 120
Query 121 GCCATGGAATCAAGCATCACCATGAGCAGCACTGCAGTGAGGTTGGCCAATGCGGGTTTC 180
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||
Sbjct 121 GCCATGGAATCAAGCATCACCATGAGCAGCACTGCAATGAGGTTGGCTAATGCGGGCTTC 180
Query 181 TCGGTCTATGGAATGGACTATGAAGGGCATGGTAAATCCGGGGGATTAAATGGTTACGTC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCGGTCTATGGAATGGACTATGAAGGGCATGGTAAATCCGGGGGATTAAATGGTTACGTC 240
Query 241 AAAAAGTTTGATGATCTTGTTCAAGACGTCTCTTCTCATTACTCTTCAATTTG--CGAGT 298
||||| ||||||||||||||||| ||||||| |||||||||||| |||||||| ||||
Sbjct 241 AAAAAATTTGATGATCTTGTTCATGACGTCTATTCTCATTACTCCTCAATTTGTGCGAG- 299
Query 299 TGGAAGAGAATAAGGGGAAGATGAGGTTTCTAATGGGAGAATCCATGGGAGGAGCAGTTG 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 -GGAAGAGAATAAGGGGAAGATGAGGTTTCTAATGGGAGAATCCATGGGAGGAGCAGTTG 358
Query 359 TGTTACTCTTGGAGAGAAAGAAGCCCAATTTTTGGGACGGTGCCGTTTTAGTCGCTCCCA 418
|||| ||||| |||||||||||||| |||||||||||||||||||||| ||||| ||||
Sbjct 359 TGTTGCTCTTAGAGAGAAAGAAGCCTGATTTTTGGGACGGTGCCGTTTTGGTCGCACCCA 418
Query 419 TGTGTAAGTTAGCAGAAGACATAAAGCCACATCCAATGGTGATCTCATTTCTCACAAAGC 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TGTGTAAGTTAGCAGAAGACATAAAGCCACATCCAATGGTGATCTCATTTCTCACAAAGC 478
Query 479 TAACTCGGTTTATTCCAACTTGGAAGATAGTTCCTAGCAACGATATTATTGACGTAGCAT 538
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 479 TAACTCGGTTTATTCCAACTTGGAAGATAGTTCCTAGCAACGATATCATTGACGTAGCAT 538
Query 539 TTAAAGAAACCCACATAAGAAAACAGGTAAGGGACAATGAGTATTGCTACAAGGGCCGTC 598
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 539 TTAAAGAATCCCACATAAGAAAACAGGTAAGGGACAATGAGTATTGCTACAAGGGCCGGC 598
Query 599 CTCGCTTGAAAACCGCTCACCAACTTTTAATGGTTAGCTTGGATCTTGAGAAGAATCTTG 658
||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||
Sbjct 599 CTCGCTTGAAAACCGCTCATCAACTCTTACTGGTTAGCTTGGATCTTGAGAAGAATCTTG 658
Query 659 ATCAGGTATCGATGCCATTTATTGTCCTTCACGGTGAAGATGATAAAGTTACAGACAAAA 718
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 659 ATCAGGTATCGATGCCATTTATTGTCCTTCACGGTGAAGATGATAAAGTTACTGACAAAA 718
Query 719 ACGTAAGCAAACTATTATACGAGGTAGCTTCAAGTTCGGACAAGACTTTTAAGTTATACC 778
|||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 719 ACGTAAGCAAACTACTATACGAGGTGGCTTCAAGTTCGGACAAGACTTTCAAGTTATACC 778
Query 779 CGAACATGTGGCATGGGCTCTTATACGGAGAATCTCCTGAGAATTTGGAGATTGTGTTTA 838
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 779 CGAACATGTGGCATGGGCTTTTATACGGAGAATCTCCTGAGAATTTGGAGATTGTGTTCA 838
Query 839 GTGATATCATAAGCTGGTTAAAGGAGAGAGCTTCTGTCACAAACCAAAAGTTGGAGACTG 898
||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 839 GTGATATCATAAGTTGGTTAAACGAGAGAGCTTCTGTCACAAACCAAAGGTTGGAGACTG 898
Query 899 AGTTAAAGCATGTAGATGATGGTTTTTCTATGCAAAAAT 937
|||||||||| | |||||||| |||||||||||||||
Sbjct 899 AGTTAAAGCAAATGGATGATGGAATTTCTATGCAAAAAT 937
> Ahg482959 jgi|Araly1|482959|fgenesh2_kg.4__2019__AT2G39400.1
Length=1169
Score = 715 bits (387), Expect = 0.0
Identities = 730/892 (82%), Gaps = 37/892 (4%)
Strand=Plus/Plus
Query 1 ATGGTTATGTACAAAGAGGATTATGT-TTCGAACTCACGAGGGATACAACTT-TTCACGT 58
||||||||||| ||||||||| ||| || |||||||||||| || || || ||||| |
Sbjct 109 ATGGTTATGTATGAAGAGGATTTTGTGTT-GAACTCACGAGGCAT-GAAGTTGTTCACTT 166
Query 59 GT-TCATGGAAACAAGAGGAGCAGCAAGAACCAAAGGCTTTAATCTTTCTCTGTCATGGC 117
|| | |||||||| || || ||||||| |||||||| || |||| ||||| ||||||
Sbjct 167 GTGT-ATGGAAACCAG-TGA--AGCAAGACCCAAAGGCATTGCTCTTCCTCTGCCATGGC 222
Query 118 TACGCCATGGAATCAAGCATCACCATG---AG--CAG-CA-CTG--CAG---TGAGGTTG 165
||||| ||||| || |||||||||||| || ||| || || ||| |||| |
Sbjct 223 TACGCTATGGAGTCCAGCATCACCATGAACAGTTCAGTCAGATGCACAGCCACGAGGCTA 282
Query 166 GCCAATGCGGGTTTCT-CGGTCTATGGAATGGACTATGAAGGGCATGGTAAATCCGGGGG 224
||||| || ||||| | ||||||||||||||||||||||||| ||||| ||||||| |||
Sbjct 283 GCCAAGGCCGGTTT-TGCGGTCTATGGAATGGACTATGAAGGACATGGAAAATCCGAGGG 341
Query 225 AT-TAAATGGTTACGTCAAAAAGTTTGATGATCTTGTTCAAGACGTCTCTTCTCATTACT 283
| ||||||||||| ||| || ||||||||||| ||| | || |||||| |||||| |
Sbjct 342 -TCTAAATGGTTACATCAGTAACTTTGATGATCTCGTTGATGATGTCTCTAATCATTATT 400
Query 284 CTTCAATTTGCGAGTTGGAAGAGAATAAGGGGAAGATGAGGTTTCTAATGGGAGAATCCA 343
|| ||||||| ||| ||||||||| ||||||||||||||||| ||| | ||||||||||
Sbjct 401 CTACAATTTGTGAGAAGGAAGAGAACAAGGGGAAGATGAGGTTCCTACTCGGAGAATCCA 460
Query 344 TGGGAGGAGCAGTTGTGTTACTCTTGGAGAGAAAGAAGCCCAATTTTTGGGACGGTGCCG 403
||||||||||||||||||| ||||| | ||||||||||| ||||||||||||||||||
Sbjct 461 TGGGAGGAGCAGTTGTGTTGCTCTTAGCCAGAAAGAAGCCTGATTTTTGGGACGGTGCCG 520
Query 404 TTTTAGTCGCTCCCATGTGTAAGTTAGCAGAAGACATAAAGCCACATCCAATGGTGATCT 463
|||| ||||| |||||||||||||||||||| || ||||||||||||||| | |||||||
Sbjct 521 TTTTGGTCGCACCCATGTGTAAGTTAGCAGACGAGATAAAGCCACATCCAGTAGTGATCT 580
Query 464 CATTTCTCAC-AAAGCTAACTCG-GTTTATTCCAACTTGGAAGATAGTTCCTAGCAAC-G 520
|| | || | ||| || | | ||||||||| || ||||| |||||||| || || |
Sbjct 581 CAATCCTTATTAAA-CTTGC-CAAGTTTATTCCGACGTGGAAAATAGTTCC-AGGAAATG 637
Query 521 ATATTATTGACGTAGCATTTAAAGAAACC-CACATAAGAAAACAGGTAAGGGACAATGAG 579
||||||||||| | ||| |||||||| || ||||| ||||| ||||| ||||| || ||
Sbjct 638 ATATTATTGACATTGCAATTAAAGAA-CCTCACATCAGAAATCAGGTGAGGGAGAACAAG 696
Query 580 TATTGCTACAAGGGCCGTCCTCGCTTGAAAACCGC-TCACCAACTTTTAATGGTTAGCTT 638
|||||||| || ||||| |||||| | || ||||| | ||||||| || ||||||||||
Sbjct 697 TATTGCTATAAAGGCCGGCCTCGCCTCAACACCGCCT-ACCAACTCTTGTTGGTTAGCTT 755
Query 639 GGATCTTGAGAAGAATCTTGATCAGGTATCGATGCCATTT-ATTGTCCTTCACGGTGAAG 697
|||||||||||||||||||| |||||||| || || ||| ||||| |||||||| ||||
Sbjct 756 AGATCTTGAGAAGAATCTTGACCAGGTATCAATTCC-TTTCATTGTTCTTCACGGAGAAG 814
Query 698 ATGATAAAGTTACAGACAAAAACGTAAGCAAACTATTATACGAGGTAGCTTCAAGTTCGG 757
|||||||||| || ||||||| | |||||||| | |||||||| || ||||||| ||||
Sbjct 815 ATGATAAAGTGACGGACAAAAGCATAAGCAAAATGTTATACGAAGTGGCTTCAACCTCGG 874
Query 758 ACAAGACTTTTAAGTTATACCCGAACATGTGGCATGGGCTCTTATACGGAGAATCTCCTG 817
||||||| || ||||| ||||| || |||||||||| | | ||||| |||||| || |||
Sbjct 875 ACAAGACATTCAAGTTGTACCCCAAAATGTGGCATGCGTTGTTATATGGAGAAACTTCTG 934
Query 818 AGAATTTGGAGATTGTGTTTAGTGATATCATAAGCTGGTTAAAGGAGAGAGC 869
| |||| || ||||||||| |||||||||||| |||| | |||| |||||
Sbjct 935 AAAATTCAGAAATTGTGTTTGGTGATATCATAAACTGGCTGGAGGATAGAGC 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34844346138
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5